Ss1.1-Thy1-THY010203D08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGCCGCCGGCGGAGCAGTCTGAGCCCGACGATGAGGCCGGGGACGGGAGCTGAGCGA GGAGGCCTCATGATGGGGCACCCTAGCATGCATTATGCCCCAATGGGAATGCACCCTATG GGTCAGAGAGCGAATATGCCTCCTGTACCTCATGGAATGATGCCGCAAATGATGCCCCCT ATGGGAGGGCCACCAATGGGACAAATGCCTGGAATGATGTCTTCAGTAATGCCTGGAATG ATGATGTCTCATATGTCTCAGGCTTCCATGCAACCTGCTTTACCGCCAGGAGTAAATAAT ATGGATGTAGCAGCAGGTGCAACATCAGGCGCCAAATCAATGTGGACTGAACATAAGTCA CCTGATGGAAGGACCTACTACTATAATACTGAAACAAAGCAGTCTACTTGGGAGAAGCCA GATGATCTTAAAACCCCTGCCGAGCAACTTTTATCTAAATGCCCTTGGAAGGAATACAAA TCTGACTCTGGAAAGCCTTACTATTATAATTCTCAAACAAAAGAATCCCGCTGGGCCAAA CCTAAAGAACTTGAGGATCTTGAAGGATACCAGAATACCATTGTTGCTGGAAGTCTTATT ACAAAATCAAACCTGCATGCAATGATCAAAGCTGAAGAAAGCAGTAAACAAGAAGAGTGC ACCACAACATCAGCAGCCCCAGTTCCTACAACAGAAATTCCAACCACAATGAGCACCATG GCTGCTGCAGAAGCGGCAGCTGCTGTTGTTGCGGCAGCAGCTGCAGCCGCAGCTGCAGCT GCTGCAGCCAATGCCAGTGCTTCCACCTCTGCTTCTAGTACTGTCGGTGGAACTGTTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGCCGCCGGCGGAGCAGTCTGAGCCCGACGATGAGGCCGGGGACGGGAGCTGAGCGA GGAGGCCTCATGATGGGGCACCCTAGCATGCATTATGCCCCAATGGGAATGCACCCTATG GGTCAGAGAGCGAATATGCCTCCTGTACCTCATGGAATGATGCCGCAAATGATGCCCCCT ATGGGAGGGCCACCAATGGGACAAATGCCTGGAATGATGTCTTCAGTAATGCCTGGAATG ATGATGTCTCATATGTCTCAGGCTTCCATGCAACCTGCTTTACCGCCAGGAGTAAATAAT ATGGATGTAGCAGCAGGTGCAACATCAGGCGCCAAATCAATGTGGACTGAACATAAGTCA CCTGATGGAAGGACCTACTACTATAATACTGAAACAAAGCAGTCTACTTGGGAGAAGCCA GATGATCTTAAAACCCCTGCCGAGCAACTTTTATCTAAATGCCCTTGGAAGGAATACAAA TCTGACTCTGGAAAGCCTTACTATTATAATTCTCAAACAAAAGAATCCCGCTGGGCCAAA CCTAAAGAACTTGAGGATCTTGAAGGATACCAGAATACCATTGTTGCTGGAAGTCTTATT ACAAAATCAAACCTGCATGCAATGATCAAAGCTGAAGAAAGCAGTAAACAAGAAGAGTGC ACCACAACATCAGCAGCCCCAGTTCCTACAACAGAAATTCCAACCACAATGAGCACCATG GCTGCTGCAGAAGCGGCAGCTGCTGTTGTTGCGGCAGCAGCTGCAGCCGCAGCTGCAGCT GCTGCAGCCAATGCCAGTGCTTCCACCTCTGCTTCTAGTACTGTCGGTGGAACTGTTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 72-840, - strand, RNAz p=0.998544 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-840, - strand, RNAz p=0.998544 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 72-204, gnl|bosTau2|chr2 (9554472-9554340) | |
| 72-204, gnl|canFam2|chr19 (56738483-56738669) | |
| 72-204, gnl|dasNov1|scaffold_7924 (63886-64099) | |
| 72-204, gnl|echTel1|scaffold_318506 (45412-45208) | |
| 72-204, gnl|galGal2|chr7 (36222804-36223008) | |
| 72-204, gnl|hg17|chr2 (153397988-153398191) | |
| 72-204, gnl|Hg17|chr2 (153398149-153398017) | |
| 72-204, gnl|loxAfr1|scaffold_9232 (5960-5755) | |
| 72-204, gnl|mm7|chr2 (53197255-53197450) | |
| 72-204, gnl|Mm7|chr2 (53197412-53197280) | |
| 72-204, gnl|monDom2|scaffold_2 (43980651-43980856) | |
| 72-204, gnl|panTro1|chr13 (42466392-42466595) | |
| 72-204, gnl|rheMac2|chr12 (16368924-16369127) | |
| 72-204, gnl|rn3|chr3 (34616559-34616756) | |
| 443-566, gnl|bosTau2|chr2 (9518465-9518342) | |
| 443-566, gnl|canFam2|chr19 (56704632-56704772) | |
| 443-566, gnl|dasNov1|scaffold_5308 (85442-85582) | |
| 443-566, gnl|echTel1|scaffold_243160 (4873-5010) | |
| 443-566, gnl|fr1|chrUn (25939244-25939106) | |
| 443-566, gnl|galGal2|chr7 (36217564-36217702) | |
| 443-566, gnl|hg17|chr2 (153361368-153361506) | |
| 443-566, gnl|Hg17|chr2 (153361496-153361373) | |
| 443-566, gnl|loxAfr1|scaffold_9232 (39534-39396) | |
| 443-566, gnl|mm7|chr2 (53166863-53167003) | |
| 443-566, gnl|Mm7|chr2 (53166991-53166868) | |
| 443-566, gnl|monDom2|scaffold_2 (43952742-43952880) | |
| 443-566, gnl|oryCun1|scaffold_5516 (1100-962) | |
| 443-566, gnl|panTro1|chr13 (42427702-42427840) | |
| 443-566, gnl|rheMac2|chr12 (16331079-16331217) | |
| 443-566, gnl|rn3|chr3 (34579224-34579364) | |
| 443-566, gnl|tetNig1|chr2 (12417045-12416905) | |
| 443-566, gnl|xenTro1|scaffold_524 (355701-355839) | |
| 643-840, gnl|bosTau2|chr2 (9515860-9515663) | |
| 643-840, gnl|Hg17|chr2 (153358803-153358606) | |
| 643-840, gnl|Mm7|chr2 (53164298-53164113) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-204, gnl|bosTau2|chr2 (9554472-9554340) | |
| 72-204, gnl|canFam2|chr19 (56738483-56738669) | |
| 72-204, gnl|dasNov1|scaffold_7924 (63886-64099) | |
| 72-204, gnl|echTel1|scaffold_318506 (45412-45208) | |
| 72-204, gnl|galGal2|chr7 (36222804-36223008) | |
| 72-204, gnl|hg17|chr2 (153397988-153398191) | |
| 72-204, gnl|Hg17|chr2 (153398149-153398017) | |
| 72-204, gnl|loxAfr1|scaffold_9232 (5960-5755) | |
| 72-204, gnl|mm7|chr2 (53197255-53197450) | |
| 72-204, gnl|Mm7|chr2 (53197412-53197280) | |
| 72-204, gnl|monDom2|scaffold_2 (43980651-43980856) | |
| 72-204, gnl|panTro1|chr13 (42466392-42466595) | |
| 72-204, gnl|rheMac2|chr12 (16368924-16369127) | |
| 72-204, gnl|rn3|chr3 (34616559-34616756) | |
| 443-566, gnl|bosTau2|chr2 (9518465-9518342) | |
| 443-566, gnl|canFam2|chr19 (56704632-56704772) | |
| 443-566, gnl|dasNov1|scaffold_5308 (85442-85582) | |
| 443-566, gnl|echTel1|scaffold_243160 (4873-5010) | |
| 443-566, gnl|fr1|chrUn (25939244-25939106) | |
| 443-566, gnl|galGal2|chr7 (36217564-36217702) | |
| 443-566, gnl|hg17|chr2 (153361368-153361506) | |
| 443-566, gnl|Hg17|chr2 (153361496-153361373) | |
| 443-566, gnl|loxAfr1|scaffold_9232 (39534-39396) | |
| 443-566, gnl|mm7|chr2 (53166863-53167003) | |
| 443-566, gnl|Mm7|chr2 (53166991-53166868) | |
| 443-566, gnl|monDom2|scaffold_2 (43952742-43952880) | |
| 443-566, gnl|oryCun1|scaffold_5516 (1100-962) | |
| 443-566, gnl|panTro1|chr13 (42427702-42427840) | |
| 443-566, gnl|rheMac2|chr12 (16331079-16331217) | |
| 443-566, gnl|rn3|chr3 (34579224-34579364) | |
| 443-566, gnl|tetNig1|chr2 (12417045-12416905) | |
| 443-566, gnl|xenTro1|scaffold_524 (355701-355839) | |
| 643-840, gnl|bosTau2|chr2 (9515860-9515663) | |
| 643-840, gnl|Hg17|chr2 (153358803-153358606) | |
| 643-840, gnl|Mm7|chr2 (53164298-53164113) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.150489) | |
| eep (0.122564) | |
| ldo (0.0970026) |