Ss1.1-Thy1-THY010204E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCATTTTGTGGCTGTTTCCTGTGGGACGTGGTGGTGGCCGTTGGGTCGGAAGAGCGA AGCGATTTTTCGCCGCGTTTTTCCTGCTTGTTTTTTCCTCCCTTTGTTTTTTCGGTCGGT ACAGCGCAGTTATGGGTCGCAAGAAGAAGAAGCAGCTGAAGCCGTGGTGCTGGTATTGTA ATAGAGATTTTGATGATGAAAAAATCCTTATACAGCACCAAAAAGCAAAGCATTTTAAAT GCCATATATGTCATAAGAAACTATATACAGGACCTGGCTTAGCTATTCATTGCATGCAGG TGCATAAAGAGACAATAGATGCTGTACCAAATGCAATACCTGGGAGAACAGACATAGAGT TGGAAATATATGGTATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGAAGACGACTTC TTGAACAAAAAACACAAGAGAGTCAAAAAAAGAAGCAACAAGATGATTCTGATGAATATG ATGATGATGATTCTGCAGCTTCAACTTCATTTCAACCACAGCCTGTTCAGCCTCAGCAAG GTTATATCCCCCCAATGGCACAACCAGGATTGCCACCAGTTCCGGGAGCACCAGGAATGC CTCCAGGCATACCTCCATTAATGCCGGGTGTTCCTCCTCTGATGCCAGGAATGCCACCAG TTATGCCAGGCATGCCACCTGGATTGCATCATCAGAGAAAATACACCCAGTCATTTTGCG GTGAAAACATAATGATGCCAATGGGTGGAATGATGCCACCTGGACCAGGAATACCACCTC TGATGCCTGGTATGCCTCCAGGTATGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAA TGACTCAATCACAGGCTGTTTCAGCGCCAGGTATTCTTAACAGACCACCTGCACCAACAG CAACAGTTCCTGCTCAGGCGGCTGTCCAAGGACCTGTTGGTACAGATTTCAAGCCTTTAA ATAGTACCCCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGCATATACCCAGT CTACAGCTTCAACCACTAGTACAACAAATAGCACTGCAGCTAAACCAGCAGCTTCAATAA CAAGTAAGCCTGCTACACTCACCACAACCAGTGCAACCAGTAAGTTGATCCATCCAGATG AGGATATATCACTGGTAAGTTGTTTGCATGTTTTTTATAGCAGTTTGATTGAGTACTGTT GTAGCAGCTGTCCATTTGAAAAGTTTTTAATTTTTATACCAATGGTCTGATCTGATTGAA AGCTTGCTGAGTGATTTTTACCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCATTTTGTGGCTGTTTCCTGTGGGACGTGGTGGTGGCCGTTGGGTCGGAAGAGCGA AGCGATTTTTCGCCGCGTTTTTCCTGCTTGTTTTTTCCTCCCTTTGTTTTTTCGGTCGGT ACAGCGCAGTTATGGGTCGCAAGAAGAAGAAGCAGCTGAAGCCGTGGTGCTGGTATTGTA ATAGAGATTTTGATGATGAAAAAATCCTTATACAGCACCAAAAAGCAAAGCATTTTAAAT GCCATATATGTCATAAGAAACTATATACAGGACCTGGCTTAGCTATTCATTGCATGCAGG TGCATAAAGAGACAATAGATGCTGTACCAAATGCAATACCTGGGAGAACAGACATAGAGT TGGAAATATATGGTATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGAAGACGACTTC TTGAACAAAAAACACAAGAGAGTCAAAAAAAGAAGCAACAAGATGATTCTGATGAATATG ATGATGATGATTCTGCAGCTTCAACTTCATTTCAACCACAGCCTGTTCAGCCTCAGCAAG GTTATATCCCCCCAATGGCACAACCAGGATTGCCACCAGTTCCGGGAGCACCAGGAATGC CTCCAGGCATACCTCCATTAATGCCGGGTGTTCCTCCTCTGATGCCAGGAATGCCACCAG TTATGCCAGGCATGCCACCTGGATTGCATCATCAGAGAAAATACACCCAGTCATTTTGCG GTGAAAACATAATGATGCCAATGGGTGGAATGATGCCACCTGGACCAGGAATACCACCTC TGATGCCTGGTATGCCTCCAGGTATGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAA TGACTCAATCACAGGCTGTTTCAGCGCCAGGTATTCTTAACAGACCACCTGCACCAACAG CAACAGTTCCTGCTCAGGCGGCTGTCCAAGGACCTGTTGGTACAGATTTCAAGCCTTTAA ATAGTACCCCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGCATATACCCAGT CTACAGCTTCAACCACTAGTACAACAAATAGCACTGCAGCTAAACCAGCAGCTTCAATAA CAAGTAAGCCTGCTACACTCACCACAACCAGTGCAACCAGTAAGTTGATCCATCCAGATG AGGATATATCACTGGTAAGTTGTTTGCATGTTTTTTATAGCAGTTTGATTGAGTACTGTT GTAGCAGCTGTCCATTTGAAAAGTTTTTAATTTTTATACCAATGGTCTGATCTGATTGAA AGCTTGCTGAGTGATTTTTACCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1028-1185, - strand, RNAz p=0.959439 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1028-1185, - strand, RNAz p=0.959439 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 172-301, gnl|bosTau2|chr19 (12504203-12504332) | |
| 172-301, gnl|canFam2|chr11 (4027260-4027133) | |
| 172-301, gnl|danRer3|chrUn (34608494-34608318) | |
| 172-301, gnl|danRer3|chrUn (34608344-34608469) | |
| 172-301, gnl|dasNov1|scaffold_24887 (50407-50308) | |
| 172-301, gnl|dasNov1|scaffold_36013 (1566-1392) | |
| 172-301, gnl|fr1|chrUn (86799022-86799195) | |
| 172-301, gnl|fr1|chrUn (86799171-86799046) | |
| 172-301, gnl|galGal2|chr18 (6534881-6535046) | |
| 172-301, gnl|galGal2|chr18 (6535031-6534907) | |
| 172-301, gnl|hg17|chr17 (27702893-27703066) | |
| 172-301, gnl|Hg17|chr17 (27702917-27703046) | |
| 172-301, gnl|hg17|chr2 (204326083-204326208) | |
| 172-301, gnl|mm7|chr11 (80467456-80467626) | |
| 172-301, gnl|mm7|chr11 (80467603-80467478) | |
| 172-301, gnl|Mm7|chr11 (80467477-80467606) | |
| 172-301, gnl|monDom2|scaffold_44 (11413701-11413530) | |
| 172-301, gnl|monDom2|scaffold_44 (11413552-11413676) | |
| 172-301, gnl|oryCun1|scaffold_171327 (9653-9826) | |
| 172-301, gnl|oryCun1|scaffold_171327 (9803-9679) | |
| 172-301, gnl|panTro1|chr13 (94324812-94324937) | |
| 172-301, gnl|panTro1|chr19 (31197371-31197544) | |
| 172-301, gnl|rheMac2|chr12 (67505547-67505672) | |
| 172-301, gnl|rheMac2|chr16 (27690945-27691118) | |
| 172-301, gnl|rn3|chr10 (68629256-68629418) | |
| 172-301, gnl|rn3|chr10 (68629403-68629283) | |
| 172-301, gnl|tetNig1|chrUn_random (53835382-53835217) | |
| 172-301, gnl|tetNig1|chrUn_random (53835240-53835365) | |
| 172-301, gnl|xenTro1|scaffold_2028 (24671-24837) | |
| 172-301, gnl|xenTro1|scaffold_2028 (24814-24689) | |
| 437-607, gnl|bosTau2|chr19 (12509692-12509862) | |
| 437-607, gnl|canFam2|chr11 (4027567-4027400) | |
| 437-607, gnl|danRer3|chrUn (34601643-34601816) | |
| 437-607, gnl|dasNov1|scaffold_24887 (50698-50550) | |
| 437-607, gnl|fr1|chrUn (86799760-86799593) | |
| 437-607, gnl|galGal2|chr18 (6536973-6536807) | |
| 437-607, gnl|Hg17|chr17 (27711728-27711898) | |
| 437-607, gnl|hg17|chr2 (204325777-204325943) | |
| 437-607, gnl|loxAfr1|scaffold_16224 (25707-25871) | |
| 437-607, gnl|mm7|chr11 (80470718-80470552) | |
| 437-607, gnl|Mm7|chr11 (80470551-80470721) | |
| 437-607, gnl|monDom2|scaffold_44 (11408692-11408856) | |
| 437-607, gnl|panTro1|chr13 (94324510-94324676) | |
| 437-607, gnl|rheMac2|chr12 (67505247-67505407) | |
| 437-607, gnl|rn3|chr10 (68632578-68632414) | |
| 437-607, gnl|xenTro1|scaffold_2028 (26003-25842) | |
| 912-1284, gnl|bosTau2|chr19 (12515785-12516159) | |
| 912-1284, gnl|Hg17|chr17 (27718904-27719282) | |
| 912-1284, gnl|Mm7|chr11 (80475861-80476230) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-301, gnl|bosTau2|chr19 (12504203-12504332) | |
| 172-301, gnl|canFam2|chr11 (4027260-4027133) | |
| 172-301, gnl|danRer3|chrUn (34608494-34608318) | |
| 172-301, gnl|danRer3|chrUn (34608344-34608469) | |
| 172-301, gnl|dasNov1|scaffold_24887 (50407-50308) | |
| 172-301, gnl|dasNov1|scaffold_36013 (1566-1392) | |
| 172-301, gnl|fr1|chrUn (86799022-86799195) | |
| 172-301, gnl|fr1|chrUn (86799171-86799046) | |
| 172-301, gnl|galGal2|chr18 (6534881-6535046) | |
| 172-301, gnl|galGal2|chr18 (6535031-6534907) | |
| 172-301, gnl|hg17|chr17 (27702893-27703066) | |
| 172-301, gnl|Hg17|chr17 (27702917-27703046) | |
| 172-301, gnl|hg17|chr2 (204326083-204326208) | |
| 172-301, gnl|mm7|chr11 (80467456-80467626) | |
| 172-301, gnl|mm7|chr11 (80467603-80467478) | |
| 172-301, gnl|Mm7|chr11 (80467477-80467606) | |
| 172-301, gnl|monDom2|scaffold_44 (11413701-11413530) | |
| 172-301, gnl|monDom2|scaffold_44 (11413552-11413676) | |
| 172-301, gnl|oryCun1|scaffold_171327 (9653-9826) | |
| 172-301, gnl|oryCun1|scaffold_171327 (9803-9679) | |
| 172-301, gnl|panTro1|chr13 (94324812-94324937) | |
| 172-301, gnl|panTro1|chr19 (31197371-31197544) | |
| 172-301, gnl|rheMac2|chr12 (67505547-67505672) | |
| 172-301, gnl|rheMac2|chr16 (27690945-27691118) | |
| 172-301, gnl|rn3|chr10 (68629256-68629418) | |
| 172-301, gnl|rn3|chr10 (68629403-68629283) | |
| 172-301, gnl|tetNig1|chrUn_random (53835382-53835217) | |
| 172-301, gnl|tetNig1|chrUn_random (53835240-53835365) | |
| 172-301, gnl|xenTro1|scaffold_2028 (24671-24837) | |
| 172-301, gnl|xenTro1|scaffold_2028 (24814-24689) | |
| 437-607, gnl|bosTau2|chr19 (12509692-12509862) | |
| 437-607, gnl|canFam2|chr11 (4027567-4027400) | |
| 437-607, gnl|danRer3|chrUn (34601643-34601816) | |
| 437-607, gnl|dasNov1|scaffold_24887 (50698-50550) | |
| 437-607, gnl|fr1|chrUn (86799760-86799593) | |
| 437-607, gnl|galGal2|chr18 (6536973-6536807) | |
| 437-607, gnl|Hg17|chr17 (27711728-27711898) | |
| 437-607, gnl|hg17|chr2 (204325777-204325943) | |
| 437-607, gnl|loxAfr1|scaffold_16224 (25707-25871) | |
| 437-607, gnl|mm7|chr11 (80470718-80470552) | |
| 437-607, gnl|Mm7|chr11 (80470551-80470721) | |
| 437-607, gnl|monDom2|scaffold_44 (11408692-11408856) | |
| 437-607, gnl|panTro1|chr13 (94324510-94324676) | |
| 437-607, gnl|rheMac2|chr12 (67505247-67505407) | |
| 437-607, gnl|rn3|chr10 (68632578-68632414) | |
| 437-607, gnl|xenTro1|scaffold_2028 (26003-25842) | |
| 912-1284, gnl|bosTau2|chr19 (12515785-12516159) | |
| 912-1284, gnl|Hg17|chr17 (27718904-27719282) | |
| 912-1284, gnl|Mm7|chr11 (80475861-80476230) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cut (0.339847) | |
| tes (0.207814) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| ste (0.135208) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.339847) | |
| tes (0.207814) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| ste (0.135208) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |