Non-Coding RNA Search

Ss1.1-Thy1-THY010204G01.5

Sequence:


               
               AGAGTGACAGAAAAAAGCAGGGGCATGAGGACATTAAATAGGGTGCTGGAGAGACATTTA
GTTTCATGCTTTGATTTATGAATGAGAAAAAAGGCCTTATAGAGTGACTAAAGGGAAGGT
TTGTCTGTTGGTAGGAGAAGGAAGTCAGAATAGAAGTTTTGTGGGGTAGGTTTGTTTAGA
ACAGAAATCAAAGACAAACTTTTCTGAGAGGAAGAACATCTGCAAATGAAATGCTGTTTC
TGCAACTTCCATTGCTCCTGGTTCTCCTCCCAGGTGGTGACAGTGAAGAGGGCTTCCAGG
AGCCAATCTCCTTCCAAATCATCTGGATCTCATCCTTTTACAACCGTTCCTGGGAAGAAG
AGGTTTGTTCAGCTTGGTTGGGAGAGTTGCAGACTCACAGACGTGAAGGGAAATCTGACA
TAGTCATTTACCGGCAGCCTTGGTCCAAGGGCAACTTCAGCAGGGAGGATCTGATGGAAT
CGGAACATATACTTCGTATGTTTTTCGTTAGATTTGTTCAGGCGTTTTTCAATCATGCCA
GTCAATGGAAGCTTGAATATCCCTTTGATGTACAGATAGCAGGAGGCTGTGACCTGTACC
ATGGTGAAACCTCAGTAGGCTTTGTGAGGATTGCTTATCAAGGATCCGACTTTGCCAGCT
TCCAGAAGAATTCATGGTTGCCCTCTCCAAAAGGGGGAACTAGAGCTCAGCTTGTCTGCA
AACTGTTCAATTTGTACCAAGGCACCCTGGAAATAATACACAAGTTGCTCAGTGACACTT
GCCCACGTTTCGTCTTGGGTCTTCTTGATGCAGGGAAGGCAGATCTCCAGCGACAAGTAA
GACCTGAGGCCTGGCTGTCCTCTGGCCCCAATCCCAGTCCTGGCCATCTGATGCTGGTTT
GTCACGTCTCTGGCTTCTACCCAAAACCTATTTGGGTGATGTGGATGCGGGGTGAGCAGG
AGCAGCCTGGCACTCAGCAAGGTGACATCCTGCCCAATGCGGATGGGACGTGGTATCTTC
GAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGGCTTGAGTTGCCGAGTGAAGCACA
GCAGCCTAGGAGGCCAGGACATCATCCTTTACTGGGAACAGCACAGCTCCGTGGGCTGGA
TCTTATTGGCAGTGATTGTGCCCCTGGTGCTCCTGACAGGTCTTGCATTTTGGCATAGGA
AGCACTGGAAACACTGTGACCCTTCAAGTGCTCTTCACCGCTTGGAATGAGATCCCAGCC
ACCCAGGAGCTCAGGGATGTATCTAAACACAGCACAGTCACTCCATCCTTTCAATTCTCC
TTGTACAGCTTTAGTTATTGTTTATTTTTGCTTAATGATCAATAGTCAACATAAGCTAAA
TGTGATTTTGCAGGATTTGTTGTTCTAACCTGCATTATGGGACTTGAAAATTCAAAATTT
AAACTGTCTATGGCATGATGTCCTAGGGACCTTTATGTCTTCAAAGTCAAGTAGATTATC
AGGCTTATATCAGATGTCACTTCCTCCAGAGGTCTTCCCTGATTCACAAGTGGAAGATGT
CTCTGCCTTGACTGATCTCCCACCACATTGTAACAGGACTTTGCTAAAGCTACTTCTCAC
TTTAGACCCTTTCTTACTATTGTTTAGACTCCCTTTCTCCTAATTTTTCAACCTTCTGAA
GAGCAAATTCCAAGTGTTTTTACTATTTGTATCCTTGGCGAAATATCTTACTTGCATGTA
ATATGCTCTCAGTAAAATTCTGTGTTAAATTTATACAAGTTTTATAGCCTTTTAAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTGACAGAAAAAAGCAGGGGCATGAGGACATTAAATAGGGTGCTGGAGAGACATTTA
GTTTCATGCTTTGATTTATGAATGAGAAAAAAGGCCTTATAGAGTGACTAAAGGGAAGGT
TTGTCTGTTGGTAGGAGAAGGAAGTCAGAATAGAAGTTTTGTGGGGTAGGTTTGTTTAGA
ACAGAAATCAAAGACAAACTTTTCTGAGAGGAAGAACATCTGCAAATGAAATGCTGTTTC
TGCAACTTCCATTGCTCCTGGTTCTCCTCCCAGGTGGTGACAGTGAAGAGGGCTTCCAGG
AGCCAATCTCCTTCCAAATCATCTGGATCTCATCCTTTTACAACCGTTCCTGGGAAGAAG
AGGTTTGTTCAGCTTGGTTGGGAGAGTTGCAGACTCACAGACGTGAAGGGAAATCTGACA
TAGTCATTTACCGGCAGCCTTGGTCCAAGGGCAACTTCAGCAGGGAGGATCTGATGGAAT
CGGAACATATACTTCGTATGTTTTTCGTTAGATTTGTTCAGGCGTTTTTCAATCATGCCA
GTCAATGGAAGCTTGAATATCCCTTTGATGTACAGATAGCAGGAGGCTGTGACCTGTACC
ATGGTGAAACCTCAGTAGGCTTTGTGAGGATTGCTTATCAAGGATCCGACTTTGCCAGCT
TCCAGAAGAATTCATGGTTGCCCTCTCCAAAAGGGGGAACTAGAGCTCAGCTTGTCTGCA
AACTGTTCAATTTGTACCAAGGCACCCTGGAAATAATACACAAGTTGCTCAGTGACACTT
GCCCACGTTTCGTCTTGGGTCTTCTTGATGCAGGGAAGGCAGATCTCCAGCGACAAGTAA
GACCTGAGGCCTGGCTGTCCTCTGGCCCCAATCCCAGTCCTGGCCATCTGATGCTGGTTT
GTCACGTCTCTGGCTTCTACCCAAAACCTATTTGGGTGATGTGGATGCGGGGTGAGCAGG
AGCAGCCTGGCACTCAGCAAGGTGACATCCTGCCCAATGCGGATGGGACGTGGTATCTTC
GAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGGCTTGAGTTGCCGAGTGAAGCACA
GCAGCCTAGGAGGCCAGGACATCATCCTTTACTGGGAACAGCACAGCTCCGTGGGCTGGA
TCTTATTGGCAGTGATTGTGCCCCTGGTGCTCCTGACAGGTCTTGCATTTTGGCATAGGA
AGCACTGGAAACACTGTGACCCTTCAAGTGCTCTTCACCGCTTGGAATGAGATCCCAGCC
ACCCAGGAGCTCAGGGATGTATCTAAACACAGCACAGTCACTCCATCCTTTCAATTCTCC
TTGTACAGCTTTAGTTATTGTTTATTTTTGCTTAATGATCAATAGTCAACATAAGCTAAA
TGTGATTTTGCAGGATTTGTTGTTCTAACCTGCATTATGGGACTTGAAAATTCAAAATTT
AAACTGTCTATGGCATGATGTCCTAGGGACCTTTATGTCTTCAAAGTCAAGTAGATTATC
AGGCTTATATCAGATGTCACTTCCTCCAGAGGTCTTCCCTGATTCACAAGTGGAAGATGT
CTCTGCCTTGACTGATCTCCCACCACATTGTAACAGGACTTTGCTAAAGCTACTTCTCAC
TTTAGACCCTTTCTTACTATTGTTTAGACTCCCTTTCTCCTAATTTTTCAACCTTCTGAA
GAGCAAATTCCAAGTGTTTTTACTATTTGTATCCTTGGCGAAATATCTTACTTGCATGTA
ATATGCTCTCAGTAAAATTCTGTGTTAAATTTATACAAGTTTTATAGCCTTTTAAAAATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CD1A_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               CD1A_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               836-1116, gnl|bosTau2|chr3 (9757869-9757589)
               

               
               836-1116, gnl|Hg17|chr1 (154965739-154966019)
               

               
               836-1116, gnl|Mm7|chr3 (87110470-87110190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               836-1116, gnl|bosTau2|chr3 (9757869-9757589)
               

               
               836-1116, gnl|Hg17|chr1 (154965739-154966019)
               

               
               836-1116, gnl|Mm7|chr3 (87110470-87110190)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               thg (2.66261)
               

               
               fty (1.05504)
               

               
               med (1.04627)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               col (0.195008)
               

               
               csk (0.140746)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (2.66261)
               

               
               fty (1.05504)
               

               
               med (1.04627)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               col (0.195008)
               

               
               csk (0.140746)
               

               
               cty (0.10408)

	836-1116, gnl\|bosTau2\|chr3 (9757869-9757589)
	836-1116, gnl\|Hg17\|chr1 (154965739-154966019)
	836-1116, gnl\|Mm7\|chr3 (87110470-87110190)

	thg (2.66261)
	fty (1.05504)
	med (1.04627)
	spl (0.286369)
	lnt (0.284616)
	col (0.195008)
	csk (0.140746)
	cty (0.10408)