Non-Coding RNA Search

Ss1.1-Thy1-THY010205C02.5

Sequence:


               
               TGCCGCGGGCAGGCAGGCAGGCAGGCAGGCGGGCAGGCGCTGAGAGAGGCGGGCGCAGAG
CCCAGGGGCAGGTACGGCTGGGGCGCAGGGTCTGTATAGGGGCGCCTGGTGCCCCAGACT
CCAGCCCAGCCTGGCCTGACCTCCCTGGGGTCAAGGGCCTTCCAGAGCTGGCGCTGCCGC
CCACTCAGCCCATTGAGGGGAGGGGGCGCGGCTGCCCCTCTACCAGGCTCCCAGCCTGGT
GCCCGCCTGGCCCCTGCCCCTTTGCTGGCCTGGCCCTCGCCCTGCAGCAGCTCTGCTCTT
GAGGGCTGTGCAGCGAGCAGCTAGGCCAGGTCCAAGCCCCCTCCTGCAGATGGAGGCGGT
CAGCCTGATCCCCTACGCGCTGGGCCTCCTGCTGCTGCCCCTCTTGGCCGTGTTGCTGAT
GGCACTGTGTGTGCGTTGCCGAGAGCTGCCAGGCTCATATGACACTGCTGCCCCCGATAG
TTTGACCCCAAGTAGCATCGTGATCAAGCGGCCTCCCACACTTGCCCCTTGGCCACCAGC
CACTTCCTACCCGCCTATGACCTCCTACCCACCCCTGAGCCAGCCAGATCTGCTCCCCAT
CCCGCGATCCCCGCAGCCCCCCGGAGGCTCCCACCGCATGCCTTCTTCCCGGCAGGACTC
AGATGGTGCCAACAGTGTGGCCAGCTACGAGAACGAGGAGCCAGTCTGTGAGGATGCGGA
CGAAGACGAGGATGAGGAAGACTATCACAACGAGGGCTACTTGGTGGTGCTTCCCGACAG
CGTCCCAGCCACTGGCGCCACGGTCCTAGCAGCTCCTGCGTCCAACAAGCCCGGCCTCCG
AGACAGCGCCTTTTCCATGGAGTCCGGGGAAGATTACGTGAACGTTCCTGAGAGTGAGGA
GAGTGCAGATGCGTCTCTAAATGGGAGCCGGGAGTATGTGAATGTGTCCCAGGAGCTACA
GCCCGTGGCCAAGACCAAGCCTGCCACCGTGCGTTCCCAGGAGGTGGAGGATGAAGAAGC
TCCAGATTACGAGAATCTGCAGCTTAACTGAGGGCCTGTGTGCCTGTTCCGGAACCAGCC
TTGCCCAGGAGTGCTGAGCCCAGCAGCTGGCAGTGGCTTTGTAGAGCCCCACCCTGCCCC
GGCTCCAGCCTGACAACAGTCTGAGAATTTTCCCCCTAACTTATTGTCACTTCGGGGTCC
AGTCCATGTGGCCCCAATACTCCGCACCTTCTGACGCAGCCTGAGAATGAAGTACCCTGG
CCCCAGCCCTACTCTGTAATAGAATAAAGGCTGGTGTGGTCTGCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGCGGGCAGGCAGGCAGGCAGGCAGGCGGGCAGGCGCTGAGAGAGGCGGGCGCAGAG
CCCAGGGGCAGGTACGGCTGGGGCGCAGGGTCTGTATAGGGGCGCCTGGTGCCCCAGACT
CCAGCCCAGCCTGGCCTGACCTCCCTGGGGTCAAGGGCCTTCCAGAGCTGGCGCTGCCGC
CCACTCAGCCCATTGAGGGGAGGGGGCGCGGCTGCCCCTCTACCAGGCTCCCAGCCTGGT
GCCCGCCTGGCCCCTGCCCCTTTGCTGGCCTGGCCCTCGCCCTGCAGCAGCTCTGCTCTT
GAGGGCTGTGCAGCGAGCAGCTAGGCCAGGTCCAAGCCCCCTCCTGCAGATGGAGGCGGT
CAGCCTGATCCCCTACGCGCTGGGCCTCCTGCTGCTGCCCCTCTTGGCCGTGTTGCTGAT
GGCACTGTGTGTGCGTTGCCGAGAGCTGCCAGGCTCATATGACACTGCTGCCCCCGATAG
TTTGACCCCAAGTAGCATCGTGATCAAGCGGCCTCCCACACTTGCCCCTTGGCCACCAGC
CACTTCCTACCCGCCTATGACCTCCTACCCACCCCTGAGCCAGCCAGATCTGCTCCCCAT
CCCGCGATCCCCGCAGCCCCCCGGAGGCTCCCACCGCATGCCTTCTTCCCGGCAGGACTC
AGATGGTGCCAACAGTGTGGCCAGCTACGAGAACGAGGAGCCAGTCTGTGAGGATGCGGA
CGAAGACGAGGATGAGGAAGACTATCACAACGAGGGCTACTTGGTGGTGCTTCCCGACAG
CGTCCCAGCCACTGGCGCCACGGTCCTAGCAGCTCCTGCGTCCAACAAGCCCGGCCTCCG
AGACAGCGCCTTTTCCATGGAGTCCGGGGAAGATTACGTGAACGTTCCTGAGAGTGAGGA
GAGTGCAGATGCGTCTCTAAATGGGAGCCGGGAGTATGTGAATGTGTCCCAGGAGCTACA
GCCCGTGGCCAAGACCAAGCCTGCCACCGTGCGTTCCCAGGAGGTGGAGGATGAAGAAGC
TCCAGATTACGAGAATCTGCAGCTTAACTGAGGGCCTGTGTGCCTGTTCCGGAACCAGCC
TTGCCCAGGAGTGCTGAGCCCAGCAGCTGGCAGTGGCTTTGTAGAGCCCCACCCTGCCCC
GGCTCCAGCCTGACAACAGTCTGAGAATTTTCCCCCTAACTTATTGTCACTTCGGGGTCC
AGTCCATGTGGCCCCAATACTCCGCACCTTCTGACGCAGCCTGAGAATGAAGTACCCTGG
CCCCAGCCCTACTCTGTAATAGAATAAAGGCTGGTGTGGTCTGCAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15079451|gb|AAH11563.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15079451|gb|AAH11563.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               59-201, + strand, RNAz p=0.981728

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-201, + strand, RNAz p=0.981728

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001014988, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001014988, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               26-453, gnl|bosTau2|chr25 (24816758-24816345)
               

               
               26-453, gnl|Hg17|chr16 (28903888-28904340)
               

               
               26-453, gnl|Mm7|chr7 (122466114-122465705)
               


               
               1060-1307, gnl|bosTau2|chr25 (24812521-24812267)
               

               
               1060-1307, gnl|Hg17|chr16 (28909019-28909275)
               

               
               1060-1307, gnl|Mm7|chr7 (122460592-122460208)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-453, gnl|bosTau2|chr25 (24816758-24816345)
               

               
               26-453, gnl|Hg17|chr16 (28903888-28904340)
               

               
               26-453, gnl|Mm7|chr7 (122466114-122465705)
               


               
               1060-1307, gnl|bosTau2|chr25 (24812521-24812267)
               

               
               1060-1307, gnl|Hg17|chr16 (28909019-28909275)
               

               
               1060-1307, gnl|Mm7|chr7 (122460592-122460208)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cty (0.31224)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

	26-453, gnl\|bosTau2\|chr25 (24816758-24816345)
	26-453, gnl\|Hg17\|chr16 (28903888-28904340)
	26-453, gnl\|Mm7\|chr7 (122466114-122465705)

	1060-1307, gnl\|bosTau2\|chr25 (24812521-24812267)
	1060-1307, gnl\|Hg17\|chr16 (28909019-28909275)
	1060-1307, gnl\|Mm7\|chr7 (122460592-122460208)

	cty (0.31224)
	med (0.232504)
	jej (0.197844)
	ill (0.175593)
	cag (0.151194)
	cly (0.120642)
	clu (0.119646)
	nbm (0.0993246)