Non-Coding RNA Search

Ss1.1-Thy1-THY010205C05.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACAAGCTTTATTTTCAATGCTATTTAGT
TCTAAAAGCCTGCCTATTTGTTTTTCCTCGCACCAGGTTACCTACAAGTCAGGATTTCGA
AAACCACAACAAACAAATCCAACACCTGTGGAATCTGAGCCCTGACCACCAGCATGTCAT
TTTGGCAATTAAACCAGGACTTCCTTCCAAGAAGCTTCTGTGCAAAATATTGTATTTCCT
CAAATGAGGCTTACTGTTTTGCAACCTTGAAACTACCCACCAACAAAGCACACCCCAAAA
ACCCAAGCTTTCAGGACTGGGTCCCAATATCACCACAAAAATCATTCTAAAAACTGTACA
ATGAATGGCCCCCAAAGTTACTTTAATAGAGGGCTTGAAAGCAAGGCAAAATTTCTCATA
AAATCCCCATCCTTCCCTGCCAACTGTTCTATACCTCTCTTCCGTGGGGATCAGTTATAC
TTCACCCTTCAAGTCCTGGGGACAACCTCAGTGGCACAGAGTGACTGAGCAGAGCCCGTC
GGAATAGGGATGAAGTTTGGACCCAGACCCAGCAACACTGAACTTGCTTGTTCCTCATAA
ATGCAGCCCCATAAGAGGGTGCATTAAACTTAAAGGCCAACCTTTCTGCATCAAATCCGT
GGATAAAAAATATTTTTCAAAATCTGTATAATTTGAACCAGTTAGTATGGTTATTAAAAA
CAAACCAAGAAACACCCAGAAATGGGGTTCCAGTGAAAGCTTGGTAAAGGAGGGATTCTG
ATCTGATGAAACAATCTAGATTTGGTCTTTTATCTCTGGGGAATGCCAGTTATCACAGCC
CCATGCATAAGCCCTCCTCAAACTCTTTTAGTAGACAGCATTTCAGTGCAGAGATCAAAG
TGAAAATATCTTTGAAAAGAAAACAGTGACATGGCTGGGAAACTGTGTGCATCTTGCTGA
ACATTTTTTCCACCCACCACATGCTTGGGTTTTCTGGGAAGGTCACCAGTTTTCCAATCA
AAATATTCTTGAAGTCGTCAGGAACAGAGGAAGAGAGACTCAGCATCTGAGAAGCTGTGT
TCCTGGTTCCATATCTGGAGCTCAGGAGCCAAAGAGCACAATCATGCAGAACATCATGAA
GACATTCCACAGGGCGATGAAGATTCGAAAGTATCTGAGGCTCAGCAAGAACTCCCGGAT
GTTGTCACCTGTGCTCGGTTCTCTCGACTCCTCCCCAAAGCCCTGCGTGTCCTTCTTTTT
CAGTTTAAAGTTGAGCACCGCCCCGGCGTTCATCAGCAGCGTCCCAAACAGCAGGATGTC
CCCGATCATCGTTACGGCCGGAGTGTCCGTCAGAACCCGAAGGTGCCAGATGCGGGGTTG
AGGGTACAGGCTAGGGCTAAGAGATTCTTGGGTGATGGGCCTGAGGCTCTCGTGCTTGTG
AGCAGAGGGATCTCAGGAGAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACAAGCTTTATTTTCAATGCTATTTAGT
TCTAAAAGCCTGCCTATTTGTTTTTCCTCGCACCAGGTTACCTACAAGTCAGGATTTCGA
AAACCACAACAAACAAATCCAACACCTGTGGAATCTGAGCCCTGACCACCAGCATGTCAT
TTTGGCAATTAAACCAGGACTTCCTTCCAAGAAGCTTCTGTGCAAAATATTGTATTTCCT
CAAATGAGGCTTACTGTTTTGCAACCTTGAAACTACCCACCAACAAAGCACACCCCAAAA
ACCCAAGCTTTCAGGACTGGGTCCCAATATCACCACAAAAATCATTCTAAAAACTGTACA
ATGAATGGCCCCCAAAGTTACTTTAATAGAGGGCTTGAAAGCAAGGCAAAATTTCTCATA
AAATCCCCATCCTTCCCTGCCAACTGTTCTATACCTCTCTTCCGTGGGGATCAGTTATAC
TTCACCCTTCAAGTCCTGGGGACAACCTCAGTGGCACAGAGTGACTGAGCAGAGCCCGTC
GGAATAGGGATGAAGTTTGGACCCAGACCCAGCAACACTGAACTTGCTTGTTCCTCATAA
ATGCAGCCCCATAAGAGGGTGCATTAAACTTAAAGGCCAACCTTTCTGCATCAAATCCGT
GGATAAAAAATATTTTTCAAAATCTGTATAATTTGAACCAGTTAGTATGGTTATTAAAAA
CAAACCAAGAAACACCCAGAAATGGGGTTCCAGTGAAAGCTTGGTAAAGGAGGGATTCTG
ATCTGATGAAACAATCTAGATTTGGTCTTTTATCTCTGGGGAATGCCAGTTATCACAGCC
CCATGCATAAGCCCTCCTCAAACTCTTTTAGTAGACAGCATTTCAGTGCAGAGATCAAAG
TGAAAATATCTTTGAAAAGAAAACAGTGACATGGCTGGGAAACTGTGTGCATCTTGCTGA
ACATTTTTTCCACCCACCACATGCTTGGGTTTTCTGGGAAGGTCACCAGTTTTCCAATCA
AAATATTCTTGAAGTCGTCAGGAACAGAGGAAGAGAGACTCAGCATCTGAGAAGCTGTGT
TCCTGGTTCCATATCTGGAGCTCAGGAGCCAAAGAGCACAATCATGCAGAACATCATGAA
GACATTCCACAGGGCGATGAAGATTCGAAAGTATCTGAGGCTCAGCAAGAACTCCCGGAT
GTTGTCACCTGTGCTCGGTTCTCTCGACTCCTCCCCAAAGCCCTGCGTGTCCTTCTTTTT
CAGTTTAAAGTTGAGCACCGCCCCGGCGTTCATCAGCAGCGTCCCAAACAGCAGGATGTC
CCCGATCATCGTTACGGCCGGAGTGTCCGTCAGAACCCGAAGGTGCCAGATGCGGGGTTG
AGGGTACAGGCTAGGGCTAAGAGATTCTTGGGTGATGGGCCTGAGGCTCTCGTGCTTGTG
AGCAGAGGGATCTCAGGAGAGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56079520|gb|AAH55692.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56079520|gb|AAH55692.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               749-867, - strand, RNAz p=0.676575
               

               
               908-1186, - strand, RNAz p=0.996499

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               749-867, - strand, RNAz p=0.676575
               

               
               908-1186, - strand, RNAz p=0.996499

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-1278, gnl|bosTau2|chr21 (35582739-35583927)
               


               
               1357-1460, gnl|bosTau2|chr7 (5899026-5899129)
               

               
               1357-1460, gnl|Hg17|chr19 (16631472-16631571)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-1278, gnl|bosTau2|chr21 (35582739-35583927)
               


               
               1357-1460, gnl|bosTau2|chr7 (5899026-5899129)
               

               
               1357-1460, gnl|Hg17|chr19 (16631472-16631571)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               cty (0.832639)
               

               
               pro (0.512033)
               

               
               ece (0.45861)
               

               
               nlu (0.383362)
               

               
               hyp (0.285673)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.832639)
               

               
               pro (0.512033)
               

               
               ece (0.45861)
               

               
               nlu (0.383362)
               

               
               hyp (0.285673)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	749-867, - strand, RNAz p=0.676575
	908-1186, - strand, RNAz p=0.996499

	65-1278, gnl\|bosTau2\|chr21 (35582739-35583927)

	1357-1460, gnl\|bosTau2\|chr7 (5899026-5899129)
	1357-1460, gnl\|Hg17\|chr19 (16631472-16631571)

	cty (0.832639)
	pro (0.512033)
	ece (0.45861)
	nlu (0.383362)
	hyp (0.285673)
	che (0.272628)
	fce (0.271592)
	kid (0.259471)
	bla (0.248694)
	clu (0.239292)
	cbe (0.239234)
	tes (0.207814)
	aor (0.195274)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	ret (0.128733)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	cbl (0.114797)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)