Non-Coding RNA Search

Ss1.1-Thy1-THY010205C11.5

Sequence:


               
               GCCATTTTGACTGAGCAACCCTAGTGACAGGAGCCGAACAAGCCGCGCAGGTTGTCCCGT
GTCCCCTCCCCCTTCCCTTCTCCAGTTGACTTCCCGGGTCCCCTACACTCCACAGTCCCG
GCCCCGCCATGTCCCAGAAACAAGAAGAGAACCCTTCGGAGGAGACCGGCGAGGAGAAGC
AGGACACGCAGGAGAAAGAAGGTATTCTCCCTGAGAGAGCCGAGGAGGCAAAGCTAAAGG
CCAAATATCCAAGCCTAGGACAAAAGCCTGGAGGCTCCGACTTCCTCATGAAGAGGCTCC
AGAAAGGGCAAAAGTACTTTGACTCAGGAGACTACAACATGGCCAAAGCCAAGATGAAGA
ATAAGCAGCTGCCAAGTGCAGGACCAGACAAGAACCTGGTGACTGGTGACCACATCCCCA
CCCCACAGGATCTGCCCCAGAGAAAGTCCTCGCTCGTCACCAGCAAGCTTGCGGGTGGCC
AAGTTGAATGATGCTGCCCGGGGCTCCGCCAGATCCTGAGACGCTGCCCCCCTGGGTCCT
GTGCTGGCTCCTGCCCCTCCCTGCTTTTGCAGCCAGGGGTCAGGAGGTGGCTCGGGTGCG
GGCTGGAGAGGCAGAAGCCCCTGCCCGTCGGTGTCCCAGCGCATGGAGCCCCTTGGGCTG
AGCACCAAGACCTTGAACCTTTTTTGTTTCTCCTTTTTTTTCCAAATAATTGTTGGGAGA
AATTTCAGTGAAATCTTGGGGGTGGGGGAGGGTTGAGAGGGTGGAGTGGGAGATTTGGGA
GAATATGAATTAGGGCTTGGAGCTGATAAAAAGGCATTCCTGACTATCCTCCTTCTTAAC
CAAGTGACTGGTGTGGGGTGGTTAGGAGGGGGAGGAAGTGAAATGGACGAAGGATGGGTT
CTGGTTCAGCTCTGTGGAAGAATGCCTTGTTTGCTTAGATGTAGCTGGGGACCTGGTGTC
AGAAAAAAGAAACTGTCCATCTAAATTTGAAAGATGCAAACAGCTTCTCTGGTTCTGCAG
AGCAAGATGAACACTTGATGTTAAATGTTCTTAAAAAAAGAAAAAGTTCTGTCCTTGAAA
TAGATTGGCTGTGGGAAGAAGGGCAGTGAGGGTCGGGGAAGGGGGCCATGAGCGTGGGGA
GCCCCACAGAGCCCAGGGGACTTTTTCAGTATGTGAAATAAAAAACAAACAAACAAAAAG
AAGACCCACGAAAAAACCCAACCCAGAAATACTCTGAAGCAGTTGGTGTGTTTTATTGGG
GTTTGGGAAAAGGGAAGAAAATAAATAAGACTGAAGACACCTTTCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATTTTGACTGAGCAACCCTAGTGACAGGAGCCGAACAAGCCGCGCAGGTTGTCCCGT
GTCCCCTCCCCCTTCCCTTCTCCAGTTGACTTCCCGGGTCCCCTACACTCCACAGTCCCG
GCCCCGCCATGTCCCAGAAACAAGAAGAGAACCCTTCGGAGGAGACCGGCGAGGAGAAGC
AGGACACGCAGGAGAAAGAAGGTATTCTCCCTGAGAGAGCCGAGGAGGCAAAGCTAAAGG
CCAAATATCCAAGCCTAGGACAAAAGCCTGGAGGCTCCGACTTCCTCATGAAGAGGCTCC
AGAAAGGGCAAAAGTACTTTGACTCAGGAGACTACAACATGGCCAAAGCCAAGATGAAGA
ATAAGCAGCTGCCAAGTGCAGGACCAGACAAGAACCTGGTGACTGGTGACCACATCCCCA
CCCCACAGGATCTGCCCCAGAGAAAGTCCTCGCTCGTCACCAGCAAGCTTGCGGGTGGCC
AAGTTGAATGATGCTGCCCGGGGCTCCGCCAGATCCTGAGACGCTGCCCCCCTGGGTCCT
GTGCTGGCTCCTGCCCCTCCCTGCTTTTGCAGCCAGGGGTCAGGAGGTGGCTCGGGTGCG
GGCTGGAGAGGCAGAAGCCCCTGCCCGTCGGTGTCCCAGCGCATGGAGCCCCTTGGGCTG
AGCACCAAGACCTTGAACCTTTTTTGTTTCTCCTTTTTTTTCCAAATAATTGTTGGGAGA
AATTTCAGTGAAATCTTGGGGGTGGGGGAGGGTTGAGAGGGTGGAGTGGGAGATTTGGGA
GAATATGAATTAGGGCTTGGAGCTGATAAAAAGGCATTCCTGACTATCCTCCTTCTTAAC
CAAGTGACTGGTGTGGGGTGGTTAGGAGGGGGAGGAAGTGAAATGGACGAAGGATGGGTT
CTGGTTCAGCTCTGTGGAAGAATGCCTTGTTTGCTTAGATGTAGCTGGGGACCTGGTGTC
AGAAAAAAGAAACTGTCCATCTAAATTTGAAAGATGCAAACAGCTTCTCTGGTTCTGCAG
AGCAAGATGAACACTTGATGTTAAATGTTCTTAAAAAAAGAAAAAGTTCTGTCCTTGAAA
TAGATTGGCTGTGGGAAGAAGGGCAGTGAGGGTCGGGGAAGGGGGCCATGAGCGTGGGGA
GCCCCACAGAGCCCAGGGGACTTTTTCAGTATGTGAAATAAAAAACAAACAAACAAAAAG
AAGACCCACGAAAAAACCCAACCCAGAAATACTCTGAAGCAGTTGGTGTGTTTTATTGGG
GTTTGGGAAAAGGGAAGAAAATAAATAAGACTGAAGACACCTTTCGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55959017|emb|CAI15509.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55959017|emb|CAI15509.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               166-475, gnl|bosTau2|chr10 (41028737-41028432)
               

               
               166-475, gnl|Hg17|chr5 (180341907-180342213)
               

               
               166-475, gnl|Mm7|chr9 (75090292-75094638)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-475, gnl|bosTau2|chr10 (41028737-41028432)
               

               
               166-475, gnl|Hg17|chr5 (180341907-180342213)
               

               
               166-475, gnl|Mm7|chr9 (75090292-75094638)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cty (0.41632)
               

               
               elu (0.385356)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)
               

               
               elu (0.385356)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	166-475, gnl\|bosTau2\|chr10 (41028737-41028432)
	166-475, gnl\|Hg17\|chr5 (180341907-180342213)
	166-475, gnl\|Mm7\|chr9 (75090292-75094638)

	cty (0.41632)
	elu (0.385356)
	csk (0.281492)
	fce (0.271592)
	ece (0.229305)
	nbm (0.198649)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	rec (0.17307)
	cut (0.169924)
	csp (0.161186)
	cli (0.152812)
	lnt (0.142308)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)