Non-Coding RNA Search

Ss1.1-Thy1-THY010205D07.5

Sequence:


               
               GCACCTTCCGCAGGAGCTCAAGTCTAAGCTGATTCTTGCTTCTCTGGAACATGGAAGGTT
TAGAAGAAGATGTAAAGTTTATAGTGGATGAGACCTTGGACTTTGGGGGGCTGTCACCAT
CTGACAGTCGAGAGGAAGAAGATATAGCAGTGTTGGCGACTCCAGAGAAACCTGTCCGAC
GAGGCCTCTCTCATCGAAGTGACCCGAATGCTGTGGTCCCCGCCCCCCAGGGTCTGAGGC
TCAGCTTAGGCCCCCTCAGCCCAGAGAAGCTGGAAGAAATCCTCGATGAGGCCAATCGGT
TAGCAGCTCAGCTGGAGCAGTGTGCCCTGCAGGAGCGAGAGAACACGGGCGAGGGCCCAG
TGCCTCGAAGAGTGAAGCCCAGCCCTCGGCGGGAGACCTTTGTGCTCAAGGACAGTCCTG
TCCGAGACCTGCTGCCCACGGTCAGCTCTCTGGCTCGGAGCACTCCCTCCCCCAGCAGCC
TGACACCCCGCCTCCGCAGCAGTGACAGGAAGGGGTCAGTCAGGGCTCTTCGGACGACAT
CTGGAAAGAGGCCCCCCAGCGTGAAGAGGGAGTCGCCCACTTGCAGTCTGTTCCCTGCAT
CCAAAAGCCCAGCGTCTTCTCCTCTTGCCCGATCAACTCCTCCAGTCCGGGGGAAAGCTG
GGCCCAGTGGGAGAGCAGTAGCAAGCCCCCCGACCCCCGTCAGACCAGTCCTAACCCCAC
AGCCTTCTACCAGCAATTCTCAGCGCCCATCTCGGCCACAGGGAGCCACGGCTAAACCTT
CCAGTCGACTACCGGTTCCATCGGCCATTCCTCGGCCCGCCAGCAAGATGCCGCTCACTG
GCCGGACTGTACCATCCAGCAAAGGTGCCCTTCCCCCAGACCCGCTGTCAGCTCGGAAAG
GACTTCCAAGACCAGGTGCCACAGGGCACAAAGTTCCTGTTTCTCAGCGACCAAATCCTC
CCATCACCAGTGTCGGCCGCAGCAATCTGCAGCCCCCCAGGAAGGTGACAGCCCCAGGAC
CTACCAGGTAAAGAGATCAGGACAGCAAGCAAGAATTCAGTAGCAAACCACTACAGTCAC
TGCCTGGACTCCCCTCTGTGAGGCCTCCCAAGCCCTGTCTTTGGAGGCAGGCCTGACCCC
AGCAGATTGTGGCCCAGGGAGAGAAGGAAGAGCCTCTACCACCCACCGCTGGTACCGCAG
GAGCGGAGGCTGTGAGAGATGGGGTGGACAAGGCTTGAACTGAAGAGGAATGAAACTCTC
TTGAGTTGAAACAAGATAGGAAAAGGAGGTTGCCTTAAACAGAAAATGAGAAATGCAGGA
GGGTGCTTTGTCCTCCTCTACCCCAGCTCTCTGTCCAGCTCCTGAGAGTTTGAACTTCCT
CCCGGGCTTTGGTTCCCTGGGCATTTGCATGTGAATGGCCTTGGTAGCTAACCTCCCTGC
TCTCTGAGGAGCCTGAATCACCTCCTCTACTGGACTTGGGCCTGTTGGAAGGGACAGGCG
GGCATCTGGTCTCCAGAATGTGTTTCCTGTGAATTCTCTGACTCCTAATAGGCCAGTTTA
TGATAAGCTTACTCCATTGGTTTGCATTTTTTTAAAATAAAATGAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCTTCCGCAGGAGCTCAAGTCTAAGCTGATTCTTGCTTCTCTGGAACATGGAAGGTT
TAGAAGAAGATGTAAAGTTTATAGTGGATGAGACCTTGGACTTTGGGGGGCTGTCACCAT
CTGACAGTCGAGAGGAAGAAGATATAGCAGTGTTGGCGACTCCAGAGAAACCTGTCCGAC
GAGGCCTCTCTCATCGAAGTGACCCGAATGCTGTGGTCCCCGCCCCCCAGGGTCTGAGGC
TCAGCTTAGGCCCCCTCAGCCCAGAGAAGCTGGAAGAAATCCTCGATGAGGCCAATCGGT
TAGCAGCTCAGCTGGAGCAGTGTGCCCTGCAGGAGCGAGAGAACACGGGCGAGGGCCCAG
TGCCTCGAAGAGTGAAGCCCAGCCCTCGGCGGGAGACCTTTGTGCTCAAGGACAGTCCTG
TCCGAGACCTGCTGCCCACGGTCAGCTCTCTGGCTCGGAGCACTCCCTCCCCCAGCAGCC
TGACACCCCGCCTCCGCAGCAGTGACAGGAAGGGGTCAGTCAGGGCTCTTCGGACGACAT
CTGGAAAGAGGCCCCCCAGCGTGAAGAGGGAGTCGCCCACTTGCAGTCTGTTCCCTGCAT
CCAAAAGCCCAGCGTCTTCTCCTCTTGCCCGATCAACTCCTCCAGTCCGGGGGAAAGCTG
GGCCCAGTGGGAGAGCAGTAGCAAGCCCCCCGACCCCCGTCAGACCAGTCCTAACCCCAC
AGCCTTCTACCAGCAATTCTCAGCGCCCATCTCGGCCACAGGGAGCCACGGCTAAACCTT
CCAGTCGACTACCGGTTCCATCGGCCATTCCTCGGCCCGCCAGCAAGATGCCGCTCACTG
GCCGGACTGTACCATCCAGCAAAGGTGCCCTTCCCCCAGACCCGCTGTCAGCTCGGAAAG
GACTTCCAAGACCAGGTGCCACAGGGCACAAAGTTCCTGTTTCTCAGCGACCAAATCCTC
CCATCACCAGTGTCGGCCGCAGCAATCTGCAGCCCCCCAGGAAGGTGACAGCCCCAGGAC
CTACCAGGTAAAGAGATCAGGACAGCAAGCAAGAATTCAGTAGCAAACCACTACAGTCAC
TGCCTGGACTCCCCTCTGTGAGGCCTCCCAAGCCCTGTCTTTGGAGGCAGGCCTGACCCC
AGCAGATTGTGGCCCAGGGAGAGAAGGAAGAGCCTCTACCACCCACCGCTGGTACCGCAG
GAGCGGAGGCTGTGAGAGATGGGGTGGACAAGGCTTGAACTGAAGAGGAATGAAACTCTC
TTGAGTTGAAACAAGATAGGAAAAGGAGGTTGCCTTAAACAGAAAATGAGAAATGCAGGA
GGGTGCTTTGTCCTCCTCTACCCCAGCTCTCTGTCCAGCTCCTGAGAGTTTGAACTTCCT
CCCGGGCTTTGGTTCCCTGGGCATTTGCATGTGAATGGCCTTGGTAGCTAACCTCCCTGC
TCTCTGAGGAGCCTGAATCACCTCCTCTACTGGACTTGGGCCTGTTGGAAGGGACAGGCG
GGCATCTGGTCTCCAGAATGTGTTTCCTGTGAATTCTCTGACTCCTAATAGGCCAGTTTA
TGATAAGCTTACTCCATTGGTTTGCATTTTTTTAAAATAAAATGAATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5T2Z1_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5T2Z1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               244-360, - strand, RNAz p=0.904618
               

               
               735-851, + strand, RNAz p=0.671543

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-360, - strand, RNAz p=0.904618
               

               
               735-851, + strand, RNAz p=0.671543

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               125-570, gnl|bosTau2|chr3 (30499321-30499766)
               

               
               125-570, gnl|Hg17|chr1 (109536727-109536282)
               

               
               125-570, gnl|Mm7|chr3 (108203255-108203697)
               


               
               682-933, gnl|bosTau2|chr3 (30500318-30500569)
               

               
               682-933, gnl|canFam2|chr6 (45602856-45602448)
               

               
               682-933, gnl|dasNov1|scaffold_178386 (1154-860)
               

               
               682-933, gnl|echTel1|scaffold_303703 (5312-5709)
               

               
               682-933, gnl|hg17|chr1 (109535439-109535846)
               

               
               682-933, gnl|Hg17|chr1 (109535713-109535462)
               

               
               682-933, gnl|loxAfr1|scaffold_15206 (55823-56229)
               

               
               682-933, gnl|mm7|chr3 (108205050-108204652)
               

               
               682-933, gnl|Mm7|chr3 (108204785-108205024)
               

               
               682-933, gnl|monDom2|scaffold_0 (7365474-7365120)
               

               
               682-933, gnl|oryCun1|scaffold_180815 (12885-12477)
               

               
               682-933, gnl|panTro1|chr1 (108460731-108461138)
               

               
               682-933, gnl|rheMac2|chr1 (112336795-112337202)
               

               
               682-933, gnl|rn3|chr2 (203918043-203917653)
               


               
               1026-1608, gnl|bosTau2|chr3 (30501203-30501805)
               

               
               1026-1608, gnl|Hg17|chr1 (109534822-109534239)
               

               
               1026-1608, gnl|Mm7|chr3 (108205885-108206455)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-570, gnl|bosTau2|chr3 (30499321-30499766)
               

               
               125-570, gnl|Hg17|chr1 (109536727-109536282)
               

               
               125-570, gnl|Mm7|chr3 (108203255-108203697)
               


               
               682-933, gnl|bosTau2|chr3 (30500318-30500569)
               

               
               682-933, gnl|canFam2|chr6 (45602856-45602448)
               

               
               682-933, gnl|dasNov1|scaffold_178386 (1154-860)
               

               
               682-933, gnl|echTel1|scaffold_303703 (5312-5709)
               

               
               682-933, gnl|hg17|chr1 (109535439-109535846)
               

               
               682-933, gnl|Hg17|chr1 (109535713-109535462)
               

               
               682-933, gnl|loxAfr1|scaffold_15206 (55823-56229)
               

               
               682-933, gnl|mm7|chr3 (108205050-108204652)
               

               
               682-933, gnl|Mm7|chr3 (108204785-108205024)
               

               
               682-933, gnl|monDom2|scaffold_0 (7365474-7365120)
               

               
               682-933, gnl|oryCun1|scaffold_180815 (12885-12477)
               

               
               682-933, gnl|panTro1|chr1 (108460731-108461138)
               

               
               682-933, gnl|rheMac2|chr1 (112336795-112337202)
               

               
               682-933, gnl|rn3|chr2 (203918043-203917653)
               


               
               1026-1608, gnl|bosTau2|chr3 (30501203-30501805)
               

               
               1026-1608, gnl|Hg17|chr1 (109534822-109534239)
               

               
               1026-1608, gnl|Mm7|chr3 (108205885-108206455)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               cut (0.169924)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cut (0.169924)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	244-360, - strand, RNAz p=0.904618
	735-851, + strand, RNAz p=0.671543

	125-570, gnl\|bosTau2\|chr3 (30499321-30499766)
	125-570, gnl\|Hg17\|chr1 (109536727-109536282)
	125-570, gnl\|Mm7\|chr3 (108203255-108203697)

	682-933, gnl\|bosTau2\|chr3 (30500318-30500569)
	682-933, gnl\|canFam2\|chr6 (45602856-45602448)
	682-933, gnl\|dasNov1\|scaffold_178386 (1154-860)
	682-933, gnl\|echTel1\|scaffold_303703 (5312-5709)
	682-933, gnl\|hg17\|chr1 (109535439-109535846)
	682-933, gnl\|Hg17\|chr1 (109535713-109535462)
	682-933, gnl\|loxAfr1\|scaffold_15206 (55823-56229)
	682-933, gnl\|mm7\|chr3 (108205050-108204652)
	682-933, gnl\|Mm7\|chr3 (108204785-108205024)
	682-933, gnl\|monDom2\|scaffold_0 (7365474-7365120)
	682-933, gnl\|oryCun1\|scaffold_180815 (12885-12477)
	682-933, gnl\|panTro1\|chr1 (108460731-108461138)
	682-933, gnl\|rheMac2\|chr1 (112336795-112337202)
	682-933, gnl\|rn3\|chr2 (203918043-203917653)

	1026-1608, gnl\|bosTau2\|chr3 (30501203-30501805)
	1026-1608, gnl\|Hg17\|chr1 (109534822-109534239)
	1026-1608, gnl\|Mm7\|chr3 (108205885-108206455)

	elu (0.385356)
	cut (0.169924)
	ese (0.126502)
	ecc (0.115035)
	jej (0.0989218)