Non-Coding RNA Search

Ss1.1-Thy1-THY010205E11.5

Sequence:


               
               GGGCGGTGCCCCTCGGGTCAGTCTGCCTCCGGCACCGGCCGCGCAGCTGGGAGCGGTGGA
GCGGAAGCCCCAGCCATGGCTGCCATCCGAAAGAAGCTAGTGATTGTGGGGGACGGGGCC
TGTGGGAAGACCTGTCTCCTCATCGTCTTCAGCAAGGATCAGTTCCCAGAGGTCTACGTC
CCCACCGTCTTTGAGAACTACATCGCAGACATCGAGGTGGACGGCAAGCAGGTGGAGCTG
GCCCTGTGGGACACAGCAGGGCAGGAAGACTATGATCGCCTGCGGCCTCTCTCCTACCCG
GACACTGACGTCATCCTCATGTGCTTCTCCATTGACAGCCCCGACAGTCTGGAAAACATC
CCTGAGAAGTGGACCCCGGAAGTGAAGCACTTCTGCCCCAATGTGCCCATCATCCTAGTG
GGAAATAAGAAGGACCTGAGGCAAGATGAGCACACACGGAGGGAGCTGGCCAAGATGAAG
CAGGAGCCTGTTCGATCTGAGGAGGGCCGGGACATGGCAAACCGGATCAGTGCCTTTGGC
TACCTTGAGTGCTCAGCCAAGACCAAGGAGGGGGTGCGGGAGGTGTTTGAGATGGCCACT
CGGGCTGGCCTCCAGGTCCGCAAGAATAAGCGCCGGAGAGGCTGCCCCATTCTCTGAGCT
CCCCTCGGCTTCCCCTGCCTCCCTGCCTCCCTTCACAGGGCACAGAAGCTCCCCTCCCTA
CTAGGGATCCCTGCCCAAGGCTCCCTTTCCCAGTTCCCTCCTGCCCAGGACTGCATCGTT
CCCCAGCTCTGAGGGTGGTGGCCAGCGGCCCTGGGAACCTAGGGCTGTGTCCTGCCTGTC
CAGAGCCGTCCCTACTCCTGTTGCCTTGGTCCAGGGGTGGAGCCTTTGCTCCCTTAGGCC
TTCCCCAGAGGATCATCACACCAGCACTTTATACACGTCTGGCTCACAGGAGAGAAGCTG
GGGTAGGGGACCTGGAGGGTGTAACCCGGAGTCCTGGTCCCTGGTGTTTCTGCTTTGGGC
AGAGGCCTTGGCTCTGGCTATACTTGGTGGGGGGCATGAATAAAGGCCACAGGCTCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGGTGCCCCTCGGGTCAGTCTGCCTCCGGCACCGGCCGCGCAGCTGGGAGCGGTGGA
GCGGAAGCCCCAGCCATGGCTGCCATCCGAAAGAAGCTAGTGATTGTGGGGGACGGGGCC
TGTGGGAAGACCTGTCTCCTCATCGTCTTCAGCAAGGATCAGTTCCCAGAGGTCTACGTC
CCCACCGTCTTTGAGAACTACATCGCAGACATCGAGGTGGACGGCAAGCAGGTGGAGCTG
GCCCTGTGGGACACAGCAGGGCAGGAAGACTATGATCGCCTGCGGCCTCTCTCCTACCCG
GACACTGACGTCATCCTCATGTGCTTCTCCATTGACAGCCCCGACAGTCTGGAAAACATC
CCTGAGAAGTGGACCCCGGAAGTGAAGCACTTCTGCCCCAATGTGCCCATCATCCTAGTG
GGAAATAAGAAGGACCTGAGGCAAGATGAGCACACACGGAGGGAGCTGGCCAAGATGAAG
CAGGAGCCTGTTCGATCTGAGGAGGGCCGGGACATGGCAAACCGGATCAGTGCCTTTGGC
TACCTTGAGTGCTCAGCCAAGACCAAGGAGGGGGTGCGGGAGGTGTTTGAGATGGCCACT
CGGGCTGGCCTCCAGGTCCGCAAGAATAAGCGCCGGAGAGGCTGCCCCATTCTCTGAGCT
CCCCTCGGCTTCCCCTGCCTCCCTGCCTCCCTTCACAGGGCACAGAAGCTCCCCTCCCTA
CTAGGGATCCCTGCCCAAGGCTCCCTTTCCCAGTTCCCTCCTGCCCAGGACTGCATCGTT
CCCCAGCTCTGAGGGTGGTGGCCAGCGGCCCTGGGAACCTAGGGCTGTGTCCTGCCTGTC
CAGAGCCGTCCCTACTCCTGTTGCCTTGGTCCAGGGGTGGAGCCTTTGCTCCCTTAGGCC
TTCCCCAGAGGATCATCACACCAGCACTTTATACACGTCTGGCTCACAGGAGAGAAGCTG
GGGTAGGGGACCTGGAGGGTGTAACCCGGAGTCCTGGTCCCTGGTGTTTCTGCTTTGGGC
AGAGGCCTTGGCTCTGGCTATACTTGGTGGGGGGCATGAATAAAGGCCACAGGCTCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5RCK9_PONPY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5RCK9_PONPY

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               802-939, + strand, RNAz p=0.982449

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               802-939, + strand, RNAz p=0.982449

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               75-615, gnl|bosTau2|chr11 (61538097-61538637)
               

               
               75-615, gnl|Hg17|chr2 (20568854-20569394)
               

               
               75-615, gnl|Mm7|chr12 (8525666-8525126)
               


               
               802-939, gnl|bosTau2|chr3 (27406741-27406607)
               

               
               802-939, gnl|Hg17|chr1 (112956032-112955921)
               

               
               802-939, gnl|Mm7|chr3 (104587193-104587326)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-615, gnl|bosTau2|chr11 (61538097-61538637)
               

               
               75-615, gnl|Hg17|chr2 (20568854-20569394)
               

               
               75-615, gnl|Mm7|chr12 (8525666-8525126)
               


               
               802-939, gnl|bosTau2|chr3 (27406741-27406607)
               

               
               802-939, gnl|Hg17|chr1 (112956032-112955921)
               

               
               802-939, gnl|Mm7|chr3 (104587193-104587326)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               cov (1.05722)
               

               
               col (0.585023)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               eru (0.480192)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (1.05722)
               

               
               col (0.585023)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               eru (0.480192)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	75-615, gnl\|bosTau2\|chr11 (61538097-61538637)
	75-615, gnl\|Hg17\|chr2 (20568854-20569394)
	75-615, gnl\|Mm7\|chr12 (8525666-8525126)

	802-939, gnl\|bosTau2\|chr3 (27406741-27406607)
	802-939, gnl\|Hg17\|chr1 (112956032-112955921)
	802-939, gnl\|Mm7\|chr3 (104587193-104587326)

	cov (1.05722)
	col (0.585023)
	ill (0.526778)
	ton (0.526501)
	eru (0.480192)
	ute (0.398353)
	fcc (0.39557)
	elu (0.385356)
	fbs (0.350693)
	jca (0.34188)
	hyp (0.285673)
	pty (0.285429)
	ese (0.253004)
	cty (0.20816)
	eje (0.197668)
	duo (0.172801)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	lnt (0.142308)
	nca (0.136874)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)