Ss1.1-Thy1-THY010205H02.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCATATTTCCCTGCTGCATGTAGAGCAAGAGGTTGCTGGAGACGACACCCCTGCCCTGC AGAGTGTCCTGGAGAGTGACACTGTGCGAGAAGATCTCCTGCGGCGGGAGCGGGAGCTCA GTGCCCAGATTGCTGCTGGCAGGGCTGAGAGCTCAGAAGCTGCACAGCTGGCAGAAGTCT ATGCCAAGTTGGAAGAGATTGAGGCTGACAAAGCACCTGCCAGGGCATCAGTCATTCTTG CTGGGCTTGGCTTTACCCCTAAAATGCAACAGCAGCCCACCCGGGAGTTTTCAGGTGGCT GGAGGATGAGACTGGCCCTGGCACGGGCACTGTTTGCTAGGCCAGATCTGCTGCTGTTAG ATGAACCCACAAATATGCTGGATGTACGGGCCATCCTATGGCTGGAGAATTACCTGCAGA CGTGGCCCTCCACAATCCTGGTCGTCTCCCATGACCGCAACTTCCTGAATGCCATAGCCA CAGACATCATCCACCTGCACAGCCAGCGGCTGGACGGTTACCGGGGAGACTTTGAGACCT TCATCAAGAGCAAGCAGGAGCGGCTGCTCAACCAGCAGCGTGAATACGAGGCCCAGCAGC AGTATCGCCAGCATATCCAGGTTTTCATTGACCGGTTTCGCTACAATGCCAACAGAGCCT CTCAAGTGCAGAGTAAACTCAAGATGCTGGAGAAGCTACCAGAGCTGAAACCCGTGGACA AGGAGTTGGAGGTAGTGATGAAGTTTCCCGATGGGTTTGAGAAGTTCTCACCACCAATTC TGCAACTAGATGAGGTGGATTTCTACTATGATCCTAAGCACATCATCTTCAGCCGTCTCT CCGTCTCTGCTGATCTTGAATCCCGCATTTGCGTGGTTGGGGAGAATGGGGCTGGGAAGT CTACCATGCTGAAGTTGCTTATGGGGGACCTGGCCCCTGTTCGGGGCATCAGACATGCTC ACAGGAATCTGAAGATCGGCTATTTCAGCCAGCACCATGTGGAGCAGCTGGACCTGAATG TTAGTGCTGTAGAACTGCTGGCACGCAAATTCCCTGGTCGGCCTGAGGAGGAGTACCGTC ACCAGCTGGGCCGGTACGGCATCTCTGGAGAGCTGGCCATGCGCCCTGTTGCCAGCTTGT CTGGGGGCCAGAAGAGCCGGGTAGCGTTTGCTCAGATGACCATGCCCTGCCCCAACTTCT ACATTTTGGATGAACCCACAAACCACCTGGATATGGAGACAATTGAGGCTCTGGGCCGTG CTCTCAACAATTTCAGGGGTGGTGTGATTCTGGTGTCCCACGATGAGCGCTTCATCAGGC TGGTGTGCCGGGAGCTGTGGGTGTGCGAAGGAGGCGGTGTCACCCGGGTCGAGGGGGGAT TTGACCAGTACCGAGCCCTTCTCCAGGAACAGTTTCGCCGTGAGGGCTTCCTCTAGGGCC ACCAGGCTGAGGACTCTGCCCAGGACCTGGACTGGTCTCCCAGACCCCTGGGCTACCATG TAGGCAACCATCTCCAGGCCACGGACTTCCCCCAACTTTGGGGACAGCCTTATTCCTAAA TCTCTCCTTTTGACTGGAGCATCCTCTTGTGCGAACCCAGGGAGCCCCACCTAAGGGTCT TTGAGGACCGGTCTTCCAAGGGGAAAGGGAGTGGGGGGTGCCCTCTGGGATTCTAGATCC CCGGTATTGCCCCAGCTGCGACTGGGCCATGAGTGGCTGCTGTGTAAATTAAATCTCCCT GCATCTCCCTTGCCTCACCTGCTCCCTGGTGCAGGGCTGCAGTGTTTGCCCGCTGATAAG GAGTGTGGACTCTGATCTGGCATTATCCTGTGAGGCTTGTGTCAGTCACACAGAGGAGGC CATGGCAGCATCAGCCCCTGGGCAGAGGTGTCATTAAAGCTGCTGAAACTCGAAAAAAAA GTGGACAGAGCTGGTGAAGTGAAGGGCAGCATGTTATATCACTGCAGTGCTGTCCCTCCA GCCCAGGCTCAGCCTCAGCTGAAGGGGTCTTGGTTCTGCTCTTTCACCCCACTGCTTGGG AGAGTAAATTGATTCTGTAACCTGGCCTCAAACTGCCAGTTGCTTTCTCCAGTGGTCTCC AGCTCAGACTCGTCCTTCTTCTCTGATCTGGACCCTTTGGGACAAAAGAGAAACTGAGAC TGACCTTGTCCCCATTTGCTTGGGTGACTCCATGTTCTTTCTTTTTCCCCTGGCCACATA GGAGGGGTCTGGGAAGTGAGGAATTGAGAATGGGGTCTAAGATGAAGAGAACGCTTTGGT TTCAAATTAATCCGTACTTAAAGAGGGAGGGGAGCTGTTTAACAGAAGTGGTATGATTTA TAAATGTTATTTCTCGGGTACTCAGCTGCTATATGTCAGCGTTACACAGAAATAGAGACA TTGCTTTACTGTTAATGGAGAAACCGGCATTAACGGAAGGAACCTGCTCACTTCAGAGAA TTGTCATCACAGAGCCGAACCAGGACATCTTAACCCAGGTGCTAAGGGAATTGTGCTAAT AAATAGGTAGCTGGGGCGGAGATATGTGTTTGGGAGTAAAGGAGAATAAAGCTGGGAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCATATTTCCCTGCTGCATGTAGAGCAAGAGGTTGCTGGAGACGACACCCCTGCCCTGC AGAGTGTCCTGGAGAGTGACACTGTGCGAGAAGATCTCCTGCGGCGGGAGCGGGAGCTCA GTGCCCAGATTGCTGCTGGCAGGGCTGAGAGCTCAGAAGCTGCACAGCTGGCAGAAGTCT ATGCCAAGTTGGAAGAGATTGAGGCTGACAAAGCACCTGCCAGGGCATCAGTCATTCTTG CTGGGCTTGGCTTTACCCCTAAAATGCAACAGCAGCCCACCCGGGAGTTTTCAGGTGGCT GGAGGATGAGACTGGCCCTGGCACGGGCACTGTTTGCTAGGCCAGATCTGCTGCTGTTAG ATGAACCCACAAATATGCTGGATGTACGGGCCATCCTATGGCTGGAGAATTACCTGCAGA CGTGGCCCTCCACAATCCTGGTCGTCTCCCATGACCGCAACTTCCTGAATGCCATAGCCA CAGACATCATCCACCTGCACAGCCAGCGGCTGGACGGTTACCGGGGAGACTTTGAGACCT TCATCAAGAGCAAGCAGGAGCGGCTGCTCAACCAGCAGCGTGAATACGAGGCCCAGCAGC AGTATCGCCAGCATATCCAGGTTTTCATTGACCGGTTTCGCTACAATGCCAACAGAGCCT CTCAAGTGCAGAGTAAACTCAAGATGCTGGAGAAGCTACCAGAGCTGAAACCCGTGGACA AGGAGTTGGAGGTAGTGATGAAGTTTCCCGATGGGTTTGAGAAGTTCTCACCACCAATTC TGCAACTAGATGAGGTGGATTTCTACTATGATCCTAAGCACATCATCTTCAGCCGTCTCT CCGTCTCTGCTGATCTTGAATCCCGCATTTGCGTGGTTGGGGAGAATGGGGCTGGGAAGT CTACCATGCTGAAGTTGCTTATGGGGGACCTGGCCCCTGTTCGGGGCATCAGACATGCTC ACAGGAATCTGAAGATCGGCTATTTCAGCCAGCACCATGTGGAGCAGCTGGACCTGAATG TTAGTGCTGTAGAACTGCTGGCACGCAAATTCCCTGGTCGGCCTGAGGAGGAGTACCGTC ACCAGCTGGGCCGGTACGGCATCTCTGGAGAGCTGGCCATGCGCCCTGTTGCCAGCTTGT CTGGGGGCCAGAAGAGCCGGGTAGCGTTTGCTCAGATGACCATGCCCTGCCCCAACTTCT ACATTTTGGATGAACCCACAAACCACCTGGATATGGAGACAATTGAGGCTCTGGGCCGTG CTCTCAACAATTTCAGGGGTGGTGTGATTCTGGTGTCCCACGATGAGCGCTTCATCAGGC TGGTGTGCCGGGAGCTGTGGGTGTGCGAAGGAGGCGGTGTCACCCGGGTCGAGGGGGGAT TTGACCAGTACCGAGCCCTTCTCCAGGAACAGTTTCGCCGTGAGGGCTTCCTCTAGGGCC ACCAGGCTGAGGACTCTGCCCAGGACCTGGACTGGTCTCCCAGACCCCTGGGCTACCATG TAGGCAACCATCTCCAGGCCACGGACTTCCCCCAACTTTGGGGACAGCCTTATTCCTAAA TCTCTCCTTTTGACTGGAGCATCCTCTTGTGCGAACCCAGGGAGCCCCACCTAAGGGTCT TTGAGGACCGGTCTTCCAAGGGGAAAGGGAGTGGGGGGTGCCCTCTGGGATTCTAGATCC CCGGTATTGCCCCAGCTGCGACTGGGCCATGAGTGGCTGCTGTGTAAATTAAATCTCCCT GCATCTCCCTTGCCTCACCTGCTCCCTGGTGCAGGGCTGCAGTGTTTGCCCGCTGATAAG GAGTGTGGACTCTGATCTGGCATTATCCTGTGAGGCTTGTGTCAGTCACACAGAGGAGGC CATGGCAGCATCAGCCCCTGGGCAGAGGTGTCATTAAAGCTGCTGAAACTCGAAAAAAAA GTGGACAGAGCTGGTGAAGTGAAGGGCAGCATGTTATATCACTGCAGTGCTGTCCCTCCA GCCCAGGCTCAGCCTCAGCTGAAGGGGTCTTGGTTCTGCTCTTTCACCCCACTGCTTGGG AGAGTAAATTGATTCTGTAACCTGGCCTCAAACTGCCAGTTGCTTTCTCCAGTGGTCTCC AGCTCAGACTCGTCCTTCTTCTCTGATCTGGACCCTTTGGGACAAAAGAGAAACTGAGAC TGACCTTGTCCCCATTTGCTTGGGTGACTCCATGTTCTTTCTTTTTCCCCTGGCCACATA GGAGGGGTCTGGGAAGTGAGGAATTGAGAATGGGGTCTAAGATGAAGAGAACGCTTTGGT TTCAAATTAATCCGTACTTAAAGAGGGAGGGGAGCTGTTTAACAGAAGTGGTATGATTTA TAAATGTTATTTCTCGGGTACTCAGCTGCTATATGTCAGCGTTACACAGAAATAGAGACA TTGCTTTACTGTTAATGGAGAAACCGGCATTAACGGAAGGAACCTGCTCACTTCAGAGAA TTGTCATCACAGAGCCGAACCAGGACATCTTAACCCAGGTGCTAAGGGAATTGTGCTAAT AAATAGGTAGCTGGGGCGGAGATATGTGTTTGGGAGTAAAGGAGAATAAAGCTGGGAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1072-1189, + strand, RNAz p=0.626445 | |
| 1436-1586, - strand, RNAz p=0.926495 | |
| 1897-2021, + strand, RNAz p=0.943148 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1072-1189, + strand, RNAz p=0.626445 | |
| 1436-1586, - strand, RNAz p=0.926495 | |
| 1897-2021, + strand, RNAz p=0.943148 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr1 (51259566-51259415) | |
| 1-154, gnl|canFam2|chr34 (20092449-20092756) | |
| 1-154, gnl|danRer3|chrNA (75187645-75187353) | |
| 1-154, gnl|dasNov1|scaffold_6962 (50217-49909) | |
| 1-154, gnl|echTel1|scaffold_318235 (44031-43746) | |
| 1-154, gnl|fr1|chrUn (276393555-276393847) | |
| 1-154, gnl|galGal2|chr9 (15193873-15194153) | |
| 1-154, gnl|hg17|chr3 (185388623-185388931) | |
| 1-154, gnl|Hg17|chr3 (185388756-185388907) | |
| 1-154, gnl|loxAfr1|scaffold_6504 (52337-52645) | |
| 1-154, gnl|mm7|chr16 (20100434-20100744) | |
| 1-154, gnl|Mm7|chr16 (20100567-20100717) | |
| 1-154, gnl|monDom2|scaffold_167 (1480139-1480437) | |
| 1-154, gnl|oryCun1|scaffold_174838 (89682-89967) | |
| 1-154, gnl|panTro1|chr2 (189339139-189339447) | |
| 1-154, gnl|rheMac2|chr2 (102482187-102481879) | |
| 1-154, gnl|rn3|chr11 (82637951-82637641) | |
| 1-154, gnl|tetNig1|chrUn_random (135689372-135689667) | |
| 1-154, gnl|xenTro1|scaffold_244 (96045-96326) | |
| 417-622, gnl|bosTau2|chr1 (51258317-51258112) | |
| 417-622, gnl|Hg17|chr3 (185390044-185390249) | |
| 417-622, gnl|Mm7|chr16 (20102277-20102482) | |
| 743-877, gnl|bosTau2|chr1 (51255807-51255673) | |
| 743-877, gnl|canFam2|chr34 (20095295-20095566) | |
| 743-877, gnl|danRer3|chrNA (184501427-184501158) | |
| 743-877, gnl|dasNov1|scaffold_6962 (46835-46561) | |
| 743-877, gnl|echTel1|scaffold_313231 (52945-53221) | |
| 743-877, gnl|fr1|chrUn (276396132-276396394) | |
| 743-877, gnl|galGal2|chr9 (15196482-15196776) | |
| 743-877, gnl|hg17|chr3 (185391477-185391751) | |
| 743-877, gnl|Hg17|chr3 (185391613-185391747) | |
| 743-877, gnl|loxAfr1|scaffold_6504 (55108-55385) | |
| 743-877, gnl|mm7|chr16 (20108569-20108856) | |
| 743-877, gnl|Mm7|chr16 (20108718-20108852) | |
| 743-877, gnl|monDom2|scaffold_167 (1482191-1482502) | |
| 743-877, gnl|oryCun1|scaffold_201926 (38922-39196) | |
| 743-877, gnl|panTro1|chr2 (189341988-189342262) | |
| 743-877, gnl|rheMac2|chr2 (102479359-102479085) | |
| 743-877, gnl|rn3|chr11 (82630261-82630005) | |
| 743-877, gnl|tetNig1|chrUn_random (135690971-135691233) | |
| 743-877, gnl|xenTro1|scaffold_244 (100916-101224) | |
| 1056-1189, gnl|bosTau2|chr1 (51254613-51254480) | |
| 1056-1189, gnl|canFam2|chr34 (20096537-20096693) | |
| 1056-1189, gnl|danRer3|chrNA (184497552-184497411) | |
| 1056-1189, gnl|dasNov1|scaffold_6962 (45687-45531) | |
| 1056-1189, gnl|echTel1|scaffold_313231 (54668-54828) | |
| 1056-1189, gnl|fr1|chrUn (276396982-276397138) | |
| 1056-1189, gnl|galGal2|chr9 (15197514-15197670) | |
| 1056-1189, gnl|hg17|chr3 (185393571-185393727) | |
| 1056-1189, gnl|Hg17|chr3 (185393591-185393724) | |
| 1056-1189, gnl|mm7|chr16 (20109917-20110071) | |
| 1056-1189, gnl|Mm7|chr16 (20109935-20110068) | |
| 1056-1189, gnl|monDom2|scaffold_167 (1483039-1483197) | |
| 1056-1189, gnl|oryCun1|scaffold_174838 (94613-94766) | |
| 1056-1189, gnl|panTro1|chr2 (189344005-189344161) | |
| 1056-1189, gnl|rheMac2|chr2 (102477259-102477103) | |
| 1056-1189, gnl|rn3|chr11 (82629010-82628856) | |
| 1056-1189, gnl|tetNig1|chrUn_random (135691661-135691802) | |
| 1056-1189, gnl|xenTro1|scaffold_244 (110380-110522) | |
| 1277-2580, gnl|bosTau2|chr1 (51254167-51252875) | |
| 1277-2580, gnl|Hg17|chr3 (185394029-185395619) | |
| 1277-2580, gnl|Mm7|chr16 (20110377-20111742) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr1 (51259566-51259415) | |
| 1-154, gnl|canFam2|chr34 (20092449-20092756) | |
| 1-154, gnl|danRer3|chrNA (75187645-75187353) | |
| 1-154, gnl|dasNov1|scaffold_6962 (50217-49909) | |
| 1-154, gnl|echTel1|scaffold_318235 (44031-43746) | |
| 1-154, gnl|fr1|chrUn (276393555-276393847) | |
| 1-154, gnl|galGal2|chr9 (15193873-15194153) | |
| 1-154, gnl|hg17|chr3 (185388623-185388931) | |
| 1-154, gnl|Hg17|chr3 (185388756-185388907) | |
| 1-154, gnl|loxAfr1|scaffold_6504 (52337-52645) | |
| 1-154, gnl|mm7|chr16 (20100434-20100744) | |
| 1-154, gnl|Mm7|chr16 (20100567-20100717) | |
| 1-154, gnl|monDom2|scaffold_167 (1480139-1480437) | |
| 1-154, gnl|oryCun1|scaffold_174838 (89682-89967) | |
| 1-154, gnl|panTro1|chr2 (189339139-189339447) | |
| 1-154, gnl|rheMac2|chr2 (102482187-102481879) | |
| 1-154, gnl|rn3|chr11 (82637951-82637641) | |
| 1-154, gnl|tetNig1|chrUn_random (135689372-135689667) | |
| 1-154, gnl|xenTro1|scaffold_244 (96045-96326) | |
| 417-622, gnl|bosTau2|chr1 (51258317-51258112) | |
| 417-622, gnl|Hg17|chr3 (185390044-185390249) | |
| 417-622, gnl|Mm7|chr16 (20102277-20102482) | |
| 743-877, gnl|bosTau2|chr1 (51255807-51255673) | |
| 743-877, gnl|canFam2|chr34 (20095295-20095566) | |
| 743-877, gnl|danRer3|chrNA (184501427-184501158) | |
| 743-877, gnl|dasNov1|scaffold_6962 (46835-46561) | |
| 743-877, gnl|echTel1|scaffold_313231 (52945-53221) | |
| 743-877, gnl|fr1|chrUn (276396132-276396394) | |
| 743-877, gnl|galGal2|chr9 (15196482-15196776) | |
| 743-877, gnl|hg17|chr3 (185391477-185391751) | |
| 743-877, gnl|Hg17|chr3 (185391613-185391747) | |
| 743-877, gnl|loxAfr1|scaffold_6504 (55108-55385) | |
| 743-877, gnl|mm7|chr16 (20108569-20108856) | |
| 743-877, gnl|Mm7|chr16 (20108718-20108852) | |
| 743-877, gnl|monDom2|scaffold_167 (1482191-1482502) | |
| 743-877, gnl|oryCun1|scaffold_201926 (38922-39196) | |
| 743-877, gnl|panTro1|chr2 (189341988-189342262) | |
| 743-877, gnl|rheMac2|chr2 (102479359-102479085) | |
| 743-877, gnl|rn3|chr11 (82630261-82630005) | |
| 743-877, gnl|tetNig1|chrUn_random (135690971-135691233) | |
| 743-877, gnl|xenTro1|scaffold_244 (100916-101224) | |
| 1056-1189, gnl|bosTau2|chr1 (51254613-51254480) | |
| 1056-1189, gnl|canFam2|chr34 (20096537-20096693) | |
| 1056-1189, gnl|danRer3|chrNA (184497552-184497411) | |
| 1056-1189, gnl|dasNov1|scaffold_6962 (45687-45531) | |
| 1056-1189, gnl|echTel1|scaffold_313231 (54668-54828) | |
| 1056-1189, gnl|fr1|chrUn (276396982-276397138) | |
| 1056-1189, gnl|galGal2|chr9 (15197514-15197670) | |
| 1056-1189, gnl|hg17|chr3 (185393571-185393727) | |
| 1056-1189, gnl|Hg17|chr3 (185393591-185393724) | |
| 1056-1189, gnl|mm7|chr16 (20109917-20110071) | |
| 1056-1189, gnl|Mm7|chr16 (20109935-20110068) | |
| 1056-1189, gnl|monDom2|scaffold_167 (1483039-1483197) | |
| 1056-1189, gnl|oryCun1|scaffold_174838 (94613-94766) | |
| 1056-1189, gnl|panTro1|chr2 (189344005-189344161) | |
| 1056-1189, gnl|rheMac2|chr2 (102477259-102477103) | |
| 1056-1189, gnl|rn3|chr11 (82629010-82628856) | |
| 1056-1189, gnl|tetNig1|chrUn_random (135691661-135691802) | |
| 1056-1189, gnl|xenTro1|scaffold_244 (110380-110522) | |
| 1277-2580, gnl|bosTau2|chr1 (51254167-51252875) | |
| 1277-2580, gnl|Hg17|chr3 (185394029-185395619) | |
| 1277-2580, gnl|Mm7|chr16 (20110377-20111742) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| clu (2.27327) | |
| cga (0.558191) | |
| elu (0.385356) | |
| ese (0.253004) | |
| mas (0.210305) | |
| jej (0.197844) | |
| fty (0.17584) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (2.27327) | |
| cga (0.558191) | |
| elu (0.385356) | |
| ese (0.253004) | |
| mas (0.210305) | |
| jej (0.197844) | |
| fty (0.17584) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |