Ss1.1-Thy1-THY010206C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTCTAAACAACCCGCCACCTCTCTATCGCCGCCCCCCATCCTCCGAAGTCCAAGTTCT CTCGGTGACCCCTGGCTTGGGGGGCTGTGCTTGGCTTCTCGCGCTCCTCTAGGCCGTTGA ATCCCGCCCGCCTGCCGCCATGGCAGAGTTGGGTCTAAATGAACACCATCAAAATGAAGT TATTAACTATATGCGTTTTGCTCGTTCAAAAAGAGGCTTGAGACTCAAAACTGTAGATTC CTGCTTCCAAGACCTCAAGGAGAGCAGGCTAGTGGAGGAGACTTTCACCATAGATGAAGT CTCTGAGGTCCTGAATGGGTTACAGGCTGTGGTCCATGGCGAGGTGGAGTCTGAGCTCAT CAACACAGCCTACACCAACGTGCTGCTTCTGCGGCAGCTTTTCTCACAAGCTGAGAAGTG GTACCTCAAGCTCCAGACAGACATCTCTGAACTTGAAAACAGAGAATTATTAGAGCAAGT TGCAGAATTTGAAAAAGCAGAATTTATATCTTCGAATAAAAAGCCCATCATAGATAACAT AAGGCCAAAACTTGCTCCACTTAATGAAGGTGGAGCAGCAGAACTCCTAAACAAGGAAAT TTTAAGACTTCAAGAAGAGAACGAGAAATTAAAGTCAAGGCTAAAGGCCACTGAAACACA GGCAACAAATGCATTGGATGAGAAGTCAAAGCTAGAAAAAGCACTGCAGGATTTACAGCT TGATCAAGGAAATCAAAAGGATTTTGTAAAGGCCCAAGACTTGAGTGACTTGGAAAACAC AGTTGCTGCTTTAAAGAGTGAATTTCAGAAGACACTTAATGACCAGACCGAAAACCAGAA GTCTCTGGAAGAGAATCTAGCCACGGCCAAACATGACCTCCTCAGGGTGCAGGAGCAACT GAGCATGGCTGAAAAGGAGTTAGAGAAGAAATTCCAACAAACAGCAGCGTATCGAAACAT GAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGACCTGAGGAAAAGACTGGCAAA ATACGAACCTGAAGATTAAAAACTGAAGAAGATTTCATCTGAAGGCTGCCACAGTGTGAA AGTACAAAGCTGTTTCTCACCTCAGGCATGTATTTGAAGCAGTTTATTATATTCCCTGTC TTTATTTTTCTATGATTTAGAGTTTGCTTCTAATATTTAGAACTAGAGTTCCTATTTCAG TTAACTAATTGAGAAGAGAGAAAACTTACCGACGGATTCTGGCCTCTTGTCTCAAACTCC TCTCTGCCTAGTGCTCCAAAGTCTTAGTTAAACTGCAATGAGAACTTCATAGCAAAAAAC AGGCTTTTAGAGTGGGAAGAAGAGACTTACTCTTTTGCATTAGTATAAAGAGTACACCTT TTCAATAAATGTTAATGCCAGCATTGTCTGTAGTTGTACATTCCCCAGAGTAAAAGTAAA TACAGAATTATTAAATATAATTACAAATAAACCTTATTTTTTAAAATGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTCTAAACAACCCGCCACCTCTCTATCGCCGCCCCCCATCCTCCGAAGTCCAAGTTCT CTCGGTGACCCCTGGCTTGGGGGGCTGTGCTTGGCTTCTCGCGCTCCTCTAGGCCGTTGA ATCCCGCCCGCCTGCCGCCATGGCAGAGTTGGGTCTAAATGAACACCATCAAAATGAAGT TATTAACTATATGCGTTTTGCTCGTTCAAAAAGAGGCTTGAGACTCAAAACTGTAGATTC CTGCTTCCAAGACCTCAAGGAGAGCAGGCTAGTGGAGGAGACTTTCACCATAGATGAAGT CTCTGAGGTCCTGAATGGGTTACAGGCTGTGGTCCATGGCGAGGTGGAGTCTGAGCTCAT CAACACAGCCTACACCAACGTGCTGCTTCTGCGGCAGCTTTTCTCACAAGCTGAGAAGTG GTACCTCAAGCTCCAGACAGACATCTCTGAACTTGAAAACAGAGAATTATTAGAGCAAGT TGCAGAATTTGAAAAAGCAGAATTTATATCTTCGAATAAAAAGCCCATCATAGATAACAT AAGGCCAAAACTTGCTCCACTTAATGAAGGTGGAGCAGCAGAACTCCTAAACAAGGAAAT TTTAAGACTTCAAGAAGAGAACGAGAAATTAAAGTCAAGGCTAAAGGCCACTGAAACACA GGCAACAAATGCATTGGATGAGAAGTCAAAGCTAGAAAAAGCACTGCAGGATTTACAGCT TGATCAAGGAAATCAAAAGGATTTTGTAAAGGCCCAAGACTTGAGTGACTTGGAAAACAC AGTTGCTGCTTTAAAGAGTGAATTTCAGAAGACACTTAATGACCAGACCGAAAACCAGAA GTCTCTGGAAGAGAATCTAGCCACGGCCAAACATGACCTCCTCAGGGTGCAGGAGCAACT GAGCATGGCTGAAAAGGAGTTAGAGAAGAAATTCCAACAAACAGCAGCGTATCGAAACAT GAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGACCTGAGGAAAAGACTGGCAAA ATACGAACCTGAAGATTAAAAACTGAAGAAGATTTCATCTGAAGGCTGCCACAGTGTGAA AGTACAAAGCTGTTTCTCACCTCAGGCATGTATTTGAAGCAGTTTATTATATTCCCTGTC TTTATTTTTCTATGATTTAGAGTTTGCTTCTAATATTTAGAACTAGAGTTCCTATTTCAG TTAACTAATTGAGAAGAGAGAAAACTTACCGACGGATTCTGGCCTCTTGTCTCAAACTCC TCTCTGCCTAGTGCTCCAAAGTCTTAGTTAAACTGCAATGAGAACTTCATAGCAAAAAAC AGGCTTTTAGAGTGGGAAGAAGAGACTTACTCTTTTGCATTAGTATAAAGAGTACACCTT TTCAATAAATGTTAATGCCAGCATTGTCTGTAGTTGTACATTCCCCAGAGTAAAAGTAAA TACAGAATTATTAAATATAATTACAAATAAACCTTATTTTTTAAAATGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 800-917, - strand, RNAz p=0.549863 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 800-917, - strand, RNAz p=0.549863 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 265-470, gnl|bosTau2|chr9 (18367820-18368025) | |
| 265-470, gnl|canFam2|chr20 (45655932-45655714) | |
| 265-470, gnl|echTel1|scaffold_295674 (7104-7322) | |
| 265-470, gnl|fr1|chrUn (3623154-3622936) | |
| 265-470, gnl|galGal2|chr2 (41893424-41893208) | |
| 265-470, gnl|hg17|chr3 (45852070-45852288) | |
| 265-470, gnl|Hg17|chr3 (45852283-45852078) | |
| 265-470, gnl|loxAfr1|scaffold_16632 (13711-13929) | |
| 265-470, gnl|mm7|chr9 (123428895-123429110) | |
| 265-470, gnl|Mm7|chr9 (123429105-123428900) | |
| 265-470, gnl|monDom2|scaffold_7 (66570806-66571019) | |
| 265-470, gnl|oryCun1|scaffold_175223 (52736-52518) | |
| 265-470, gnl|panTro1|chr2 (47199441-47199659) | |
| 265-470, gnl|rheMac2|chr2 (90696335-90696117) | |
| 265-470, gnl|rn3|chr8 (128504322-128504537) | |
| 265-470, gnl|tetNig1|chr6 (5049815-5049617) | |
| 265-470, gnl|xenTro1|scaffold_219 (75172-74968) | |
| 738-917, gnl|bosTau2|chr9 (18375791-18375970) | |
| 738-917, gnl|canFam2|chr20 (45662822-45662627) | |
| 738-917, gnl|danRer3|chrUn (168013956-168013764) | |
| 738-917, gnl|dasNov1|scaffold_8112 (74365-74168) | |
| 738-917, gnl|echTel1|scaffold_279792 (45124-44951) | |
| 738-917, gnl|fr1|chrUn (3625133-3624955) | |
| 738-917, gnl|galGal2|chr2 (41899436-41899248) | |
| 738-917, gnl|hg17|chr3 (45844929-45845126) | |
| 738-917, gnl|Hg17|chr3 (45845113-45844934) | |
| 738-917, gnl|loxAfr1|scaffold_16632 (6386-6583) | |
| 738-917, gnl|mm7|chr9 (123418367-123418564) | |
| 738-917, gnl|Mm7|chr9 (123418551-123418372) | |
| 738-917, gnl|monDom2|scaffold_7 (66564270-66564467) | |
| 738-917, gnl|oryCun1|scaffold_175223 (59087-58890) | |
| 738-917, gnl|panTro1|chr2 (47192275-47192472) | |
| 738-917, gnl|rheMac2|chr2 (90703419-90703222) | |
| 738-917, gnl|rn3|chr8 (128496999-128497205) | |
| 738-917, gnl|tetNig1|chr6 (5051832-5051657) | |
| 1021-1319, gnl|bosTau2|chr9 (18378404-18378699) | |
| 1021-1319, gnl|canFam2|chr20 (45665419-45664905) | |
| 1021-1319, gnl|dasNov1|scaffold_8112 (78238-77709) | |
| 1021-1319, gnl|echTel1|scaffold_279792 (45694-45232) | |
| 1021-1319, gnl|hg17|chr3 (45842284-45842825) | |
| 1021-1319, gnl|Hg17|chr3 (45842828-45842545) | |
| 1021-1319, gnl|loxAfr1|scaffold_16632 (3887-4416) | |
| 1021-1319, gnl|mm7|chr9 (123415852-123416348) | |
| 1021-1319, gnl|Mm7|chr9 (123416351-123416041) | |
| 1021-1319, gnl|monDom2|scaffold_7 (66560377-66560976) | |
| 1021-1319, gnl|oryCun1|scaffold_175223 (61773-61290) | |
| 1021-1319, gnl|panTro1|chr2 (47189613-47190154) | |
| 1021-1319, gnl|rheMac2|chr2 (90706022-90705480) | |
| 1021-1319, gnl|rn3|chr8 (128494340-128494836) | |
| 1170-1316, gnl|bosTau2|chr11 (70790406-70790258) | |
| 1170-1316, gnl|Hg17|chr3 (45842704-45842526) | |
| 1326-1491, gnl|bosTau2|chr9 (18378686-18378849) | |
| 1326-1491, gnl|canFam2|chr20 (45665419-45664905) | |
| 1326-1491, gnl|dasNov1|scaffold_8112 (78238-77709) | |
| 1326-1491, gnl|echTel1|scaffold_279792 (45694-45232) | |
| 1326-1491, gnl|hg17|chr3 (45842284-45842825) | |
| 1326-1491, gnl|Hg17|chr3 (45842558-45842338) | |
| 1326-1491, gnl|loxAfr1|scaffold_16632 (3887-4416) | |
| 1326-1491, gnl|mm7|chr9 (123415852-123416348) | |
| 1326-1491, gnl|Mm7|chr9 (123416072-123415900) | |
| 1326-1491, gnl|monDom2|scaffold_7 (66560377-66560976) | |
| 1326-1491, gnl|oryCun1|scaffold_175223 (61773-61290) | |
| 1326-1491, gnl|panTro1|chr2 (47189613-47190154) | |
| 1326-1491, gnl|rheMac2|chr2 (90706022-90705480) | |
| 1326-1491, gnl|rn3|chr8 (128494340-128494836) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 265-470, gnl|bosTau2|chr9 (18367820-18368025) | |
| 265-470, gnl|canFam2|chr20 (45655932-45655714) | |
| 265-470, gnl|echTel1|scaffold_295674 (7104-7322) | |
| 265-470, gnl|fr1|chrUn (3623154-3622936) | |
| 265-470, gnl|galGal2|chr2 (41893424-41893208) | |
| 265-470, gnl|hg17|chr3 (45852070-45852288) | |
| 265-470, gnl|Hg17|chr3 (45852283-45852078) | |
| 265-470, gnl|loxAfr1|scaffold_16632 (13711-13929) | |
| 265-470, gnl|mm7|chr9 (123428895-123429110) | |
| 265-470, gnl|Mm7|chr9 (123429105-123428900) | |
| 265-470, gnl|monDom2|scaffold_7 (66570806-66571019) | |
| 265-470, gnl|oryCun1|scaffold_175223 (52736-52518) | |
| 265-470, gnl|panTro1|chr2 (47199441-47199659) | |
| 265-470, gnl|rheMac2|chr2 (90696335-90696117) | |
| 265-470, gnl|rn3|chr8 (128504322-128504537) | |
| 265-470, gnl|tetNig1|chr6 (5049815-5049617) | |
| 265-470, gnl|xenTro1|scaffold_219 (75172-74968) | |
| 738-917, gnl|bosTau2|chr9 (18375791-18375970) | |
| 738-917, gnl|canFam2|chr20 (45662822-45662627) | |
| 738-917, gnl|danRer3|chrUn (168013956-168013764) | |
| 738-917, gnl|dasNov1|scaffold_8112 (74365-74168) | |
| 738-917, gnl|echTel1|scaffold_279792 (45124-44951) | |
| 738-917, gnl|fr1|chrUn (3625133-3624955) | |
| 738-917, gnl|galGal2|chr2 (41899436-41899248) | |
| 738-917, gnl|hg17|chr3 (45844929-45845126) | |
| 738-917, gnl|Hg17|chr3 (45845113-45844934) | |
| 738-917, gnl|loxAfr1|scaffold_16632 (6386-6583) | |
| 738-917, gnl|mm7|chr9 (123418367-123418564) | |
| 738-917, gnl|Mm7|chr9 (123418551-123418372) | |
| 738-917, gnl|monDom2|scaffold_7 (66564270-66564467) | |
| 738-917, gnl|oryCun1|scaffold_175223 (59087-58890) | |
| 738-917, gnl|panTro1|chr2 (47192275-47192472) | |
| 738-917, gnl|rheMac2|chr2 (90703419-90703222) | |
| 738-917, gnl|rn3|chr8 (128496999-128497205) | |
| 738-917, gnl|tetNig1|chr6 (5051832-5051657) | |
| 1021-1319, gnl|bosTau2|chr9 (18378404-18378699) | |
| 1021-1319, gnl|canFam2|chr20 (45665419-45664905) | |
| 1021-1319, gnl|dasNov1|scaffold_8112 (78238-77709) | |
| 1021-1319, gnl|echTel1|scaffold_279792 (45694-45232) | |
| 1021-1319, gnl|hg17|chr3 (45842284-45842825) | |
| 1021-1319, gnl|Hg17|chr3 (45842828-45842545) | |
| 1021-1319, gnl|loxAfr1|scaffold_16632 (3887-4416) | |
| 1021-1319, gnl|mm7|chr9 (123415852-123416348) | |
| 1021-1319, gnl|Mm7|chr9 (123416351-123416041) | |
| 1021-1319, gnl|monDom2|scaffold_7 (66560377-66560976) | |
| 1021-1319, gnl|oryCun1|scaffold_175223 (61773-61290) | |
| 1021-1319, gnl|panTro1|chr2 (47189613-47190154) | |
| 1021-1319, gnl|rheMac2|chr2 (90706022-90705480) | |
| 1021-1319, gnl|rn3|chr8 (128494340-128494836) | |
| 1170-1316, gnl|bosTau2|chr11 (70790406-70790258) | |
| 1170-1316, gnl|Hg17|chr3 (45842704-45842526) | |
| 1326-1491, gnl|bosTau2|chr9 (18378686-18378849) | |
| 1326-1491, gnl|canFam2|chr20 (45665419-45664905) | |
| 1326-1491, gnl|dasNov1|scaffold_8112 (78238-77709) | |
| 1326-1491, gnl|echTel1|scaffold_279792 (45694-45232) | |
| 1326-1491, gnl|hg17|chr3 (45842284-45842825) | |
| 1326-1491, gnl|Hg17|chr3 (45842558-45842338) | |
| 1326-1491, gnl|loxAfr1|scaffold_16632 (3887-4416) | |
| 1326-1491, gnl|mm7|chr9 (123415852-123416348) | |
| 1326-1491, gnl|Mm7|chr9 (123416072-123415900) | |
| 1326-1491, gnl|monDom2|scaffold_7 (66560377-66560976) | |
| 1326-1491, gnl|oryCun1|scaffold_175223 (61773-61290) | |
| 1326-1491, gnl|panTro1|chr2 (47189613-47190154) | |
| 1326-1491, gnl|rheMac2|chr2 (90706022-90705480) | |
| 1326-1491, gnl|rn3|chr8 (128494340-128494836) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| tes (0.415628) | |
| fcc (0.39557) | |
| pgl (0.35545) | |
| sin (0.349895) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| pan (0.23596) | |
| spc (0.226732) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| csp (0.161186) | |
| mga (0.160205) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| jca (0.11396) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| fcc (0.39557) | |
| pgl (0.35545) | |
| sin (0.349895) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| pan (0.23596) | |
| spc (0.226732) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| csp (0.161186) | |
| mga (0.160205) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| jca (0.11396) |