Non-Coding RNA Search

Ss1.1-Thy1-THY010206D04.5

Sequence:


               
               TGACAGCAGTGGGAGTGCCAGTGCGGTGACAGTGCTGTTCTCACCTAACCCACGGCAGAG
AAGGGAACAACCACGTTGCACGCGGACACCCTCCTCGAGGGGAGCACAGGGCTGGGAGGC
ACCCGGCCTCCCCTCTTTCGTTCCCCTGGGCTCCGTGTCTGCGAGGAAGCAACACCAGCA
GCTCAGACCTGGGCGGACCTTCAGGGAACATGCAGCCAGTCCTGCTCTCATTGGCCTTTC
TTCTGTCCCCTGGGCTGGGATGGCCTTTTCTTGCAGAGGAGATCATAGGGGGCCATGAGG
CCAAGCCCCACTCCCGCCCCTACATGGCCTTCGTTCGGTTTCTGGACAAGGAGAGTGTGA
AGAGGTGTGGCGGAGTCCTCGTGCGGAAGGACTTTGTTCTGACAGCTGCTCACTGCAGGG
GAAGCTCAATCAACGTCACCCTGGGGGCCCACAACATCAAGAAACAGGAGGAGACCCAGC
AGGTGATCCCAGTGAGAAAGGCCATCCGTCACCCAGACTATAACCCTAAGAACTTCTCCA
ATGACATCATGTTACTGCAGCTGGAGAGAAAGGCCAAGCTGACTAAGGCTGTGAAGACCC
TCGGCCTGCCCGGGGCCAAGGCCAGGGTGAAGCCGGGACAGGTGTGCAGTGTGGCCGGCT
GGGGGCAGGTGGCAAGGGGCATTCAAACCTCCACCCTGCAGGAGGCAAAGCTGAGGGTGC
AGGACGATGTGGCGTGCGAATTCCCCTTCCCCAGCGGCTATTACCACCGGGCCTCCCAGA
TTTGTGTGGGGAACCCGAGGGACATGAAGACCAGCTTCAAGGGCGACTCCGGCGGGCCCC
TCGTGTGCAAAAATGTGGTCCAGGGTATTTTCTCCTATGGAAAAATGGATGGGACCCCTC
CCGGAGTCTTTACCAAGGTCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACAGCAGTGGGAGTGCCAGTGCGGTGACAGTGCTGTTCTCACCTAACCCACGGCAGAG
AAGGGAACAACCACGTTGCACGCGGACACCCTCCTCGAGGGGAGCACAGGGCTGGGAGGC
ACCCGGCCTCCCCTCTTTCGTTCCCCTGGGCTCCGTGTCTGCGAGGAAGCAACACCAGCA
GCTCAGACCTGGGCGGACCTTCAGGGAACATGCAGCCAGTCCTGCTCTCATTGGCCTTTC
TTCTGTCCCCTGGGCTGGGATGGCCTTTTCTTGCAGAGGAGATCATAGGGGGCCATGAGG
CCAAGCCCCACTCCCGCCCCTACATGGCCTTCGTTCGGTTTCTGGACAAGGAGAGTGTGA
AGAGGTGTGGCGGAGTCCTCGTGCGGAAGGACTTTGTTCTGACAGCTGCTCACTGCAGGG
GAAGCTCAATCAACGTCACCCTGGGGGCCCACAACATCAAGAAACAGGAGGAGACCCAGC
AGGTGATCCCAGTGAGAAAGGCCATCCGTCACCCAGACTATAACCCTAAGAACTTCTCCA
ATGACATCATGTTACTGCAGCTGGAGAGAAAGGCCAAGCTGACTAAGGCTGTGAAGACCC
TCGGCCTGCCCGGGGCCAAGGCCAGGGTGAAGCCGGGACAGGTGTGCAGTGTGGCCGGCT
GGGGGCAGGTGGCAAGGGGCATTCAAACCTCCACCCTGCAGGAGGCAAAGCTGAGGGTGC
AGGACGATGTGGCGTGCGAATTCCCCTTCCCCAGCGGCTATTACCACCGGGCCTCCCAGA
TTTGTGTGGGGAACCCGAGGGACATGAAGACCAGCTTCAAGGGCGACTCCGGCGGGCCCC
TCGTGTGCAAAAATGTGGTCCAGGGTATTTTCTCCTATGGAAAAATGGATGGGACCCCTC
CCGGAGTCTTTACCAAGGTCTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20381278|gb|AAH27974.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20381278|gb|AAH27974.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               637-755, - strand, RNAz p=0.66439

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               637-755, - strand, RNAz p=0.66439

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               4-260, gnl|bosTau2|chr21 (23793446-23793709)
               

               
               4-260, gnl|Hg17|chr14 (24148880-24148608)
               

               
               4-260, gnl|Mm7|chr14 (50988109-50987858)
               


               
               263-424, gnl|bosTau2|chr21 (23794734-23794895)
               

               
               263-424, gnl|Hg17|chr14 (24147472-24147311)
               

               
               263-424, gnl|Mm7|chr14 (50986814-50986651)
               


               
               558-822, gnl|bosTau2|chr21 (23795759-23796020)
               

               
               558-822, gnl|canFam2|chr8 (7497052-7497654)
               

               
               558-822, gnl|dasNov1|scaffold_38140 (40012-39418)
               

               
               558-822, gnl|echTel1|scaffold_226455 (4766-5373)
               

               
               558-822, gnl|hg17|chr14 (24146194-24146799)
               

               
               558-822, gnl|Hg17|chr14 (24146455-24146194)
               

               
               558-822, gnl|loxAfr1|scaffold_28286 (14153-13575)
               

               
               558-822, gnl|mm7|chr14 (50997552-50998141)
               

               
               558-822, gnl|Mm7|chr14 (50985867-50985603)
               

               
               558-822, gnl|monDom2|scaffold_8 (28909980-28909330)
               

               
               558-822, gnl|oryCun1|scaffold_207151 (116613-116008)
               

               
               558-822, gnl|panTro1|chr15 (23044566-23045171)
               

               
               558-822, gnl|rheMac2|chr7 (87480317-87480931)
               

               
               558-822, gnl|rn3|chr15 (34657799-34658414)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-260, gnl|bosTau2|chr21 (23793446-23793709)
               

               
               4-260, gnl|Hg17|chr14 (24148880-24148608)
               

               
               4-260, gnl|Mm7|chr14 (50988109-50987858)
               


               
               263-424, gnl|bosTau2|chr21 (23794734-23794895)
               

               
               263-424, gnl|Hg17|chr14 (24147472-24147311)
               

               
               263-424, gnl|Mm7|chr14 (50986814-50986651)
               


               
               558-822, gnl|bosTau2|chr21 (23795759-23796020)
               

               
               558-822, gnl|canFam2|chr8 (7497052-7497654)
               

               
               558-822, gnl|dasNov1|scaffold_38140 (40012-39418)
               

               
               558-822, gnl|echTel1|scaffold_226455 (4766-5373)
               

               
               558-822, gnl|hg17|chr14 (24146194-24146799)
               

               
               558-822, gnl|Hg17|chr14 (24146455-24146194)
               

               
               558-822, gnl|loxAfr1|scaffold_28286 (14153-13575)
               

               
               558-822, gnl|mm7|chr14 (50997552-50998141)
               

               
               558-822, gnl|Mm7|chr14 (50985867-50985603)
               

               
               558-822, gnl|monDom2|scaffold_8 (28909980-28909330)
               

               
               558-822, gnl|oryCun1|scaffold_207151 (116613-116008)
               

               
               558-822, gnl|panTro1|chr15 (23044566-23045171)
               

               
               558-822, gnl|rheMac2|chr7 (87480317-87480931)
               

               
               558-822, gnl|rn3|chr15 (34657799-34658414)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               thg (0.126791)

	4-260, gnl\|bosTau2\|chr21 (23793446-23793709)
	4-260, gnl\|Hg17\|chr14 (24148880-24148608)
	4-260, gnl\|Mm7\|chr14 (50988109-50987858)

	263-424, gnl\|bosTau2\|chr21 (23794734-23794895)
	263-424, gnl\|Hg17\|chr14 (24147472-24147311)
	263-424, gnl\|Mm7\|chr14 (50986814-50986651)

	558-822, gnl\|bosTau2\|chr21 (23795759-23796020)
	558-822, gnl\|canFam2\|chr8 (7497052-7497654)
	558-822, gnl\|dasNov1\|scaffold_38140 (40012-39418)
	558-822, gnl\|echTel1\|scaffold_226455 (4766-5373)
	558-822, gnl\|hg17\|chr14 (24146194-24146799)
	558-822, gnl\|Hg17\|chr14 (24146455-24146194)
	558-822, gnl\|loxAfr1\|scaffold_28286 (14153-13575)
	558-822, gnl\|mm7\|chr14 (50997552-50998141)
	558-822, gnl\|Mm7\|chr14 (50985867-50985603)
	558-822, gnl\|monDom2\|scaffold_8 (28909980-28909330)
	558-822, gnl\|oryCun1\|scaffold_207151 (116613-116008)
	558-822, gnl\|panTro1\|chr15 (23044566-23045171)
	558-822, gnl\|rheMac2\|chr7 (87480317-87480931)
	558-822, gnl\|rn3\|chr15 (34657799-34658414)