Non-Coding RNA Search

Ss1.1-Thy1-THY010206D05.5

Sequence:


               
               GATCACAAGTGAAAAGAGAAGGATGCACGGTAGCTCTCGGCAGAGGGGGGCTCCCGGGGC
GGGCCGGGCCGCGGGGGCCGCTCGCGGCGACATGGAGGAAGAGAGCAAGAAGGGCAAGAA
GCCTGGAATTGTGTCGCCGTTTAAACGCGTGTTCCTAAAGGGTGAGAAGAGTAGAGATAA
GAAAGCCCATGAGAAGGTGACAGAGAGGCGCCCTCTGCACACCGTGGTGCTGTCCCTGCC
TGAGCGCGTCGAGCCCGACCGACTGCTGAGCGACTATATCGAGAAGGAGGTGAAGTATTT
AGGTCAGTTAACGTCCATACCAGGGTACCTGAATCCCTCCAGTAGGACGGAAATCCTGCA
TTTCATAGACAACGCAAAGCGAGCCCACCAGCTCCCCGGACACTTGACCCAGGAGCATGA
CGCGGTCATCAGCCTGTCTGCCTACAACGTCAAGCTGGCCTGGAGGGACGGGGAGGACAC
CATCCTCAGGGTGCCCATCCATGACATCGCCGCCGTGTCCTACGTGCGGGATGACGCCTC
GCACCTGGTGGTGCTGAAGACAGCCCAGGACCCCGGCATCTCCCCCAGCCAGAGCTTGTG
TGCAGAAAGTTCCAGAGGCCTCACCACAGGCTCCCTGTCGGAGAGCGGCGTGGGGCCTGT
GGAGGCCTGCTGCCTGGTGATCCTGGCCGCGGAGAGCAAGGTCGCCGCCGAAGAGCTGTG
CTCCCTGCTCGGCCAAGTCTTCCAGATCGTGTACACGGAGTCCACCATCGACTTCCTGGA
CAGAGCCATATTTGACGGGGCCTCGACGCCCACCCACCACCCGTCCCTTCACAGCGACGA
CTCTTCCACAAAGGTGGACCTGAAGGAGCCCTATGAGACGGAAGCCAGCACGTTCACCTT
CCCCGAGTGTGCGCATGCAGGCGGCGTCTCGCCCTTGTCCTTCTGCATGCAGACGGCGCC
CCACGCCAAGACGGTCAGTGAGAGCGAGCTGAGCGCCACGGCTGCCGAGCTGCTGCAGGA
CTACATGCTCACGCTGCGCACCAAGCTGTCATCGCAGGAGATCCAGCAGTTCGCGGCGCT
GCTGCACGAGTACCGCGACGGGGCCTCGGTGCACGAGTTCTGCATCAACCTGCGGCAGCT
CTACGGGGACAGCCGCAAGTTCCTGCTGCTCGGTCTGCGGCCCTTCATCCCTGAGAAGGA
CAGCCAGCACTTCGAGAACTTTCTGGAGACCATCGGCGTGAAGGACGGCCGCGGCATCAT
CACCGACAGCTTTGGCAGGTACCGCCGGACCATGAGCTCCACCTCCACCTCCACCTCCAA
CGGGAACAGGGCCGCGGGCAGCTCCGACGACCAGTCGGCCCCCTCGGAGGGGGACGAGTG
GGACCGCATGATCTCGGACATCAGCAATGACATCGAGGCGCTGGGCTGCAGCATGGACCC
GGACTCGGCCTGACGCCGCCGGGCCCGCGGGCCGCCCTGCTCCTGCTCGTGGGGGGCGCC
GGGCGCGGGGGCTGGACCGTGAAGGCGGAACCCTGGCGCGGGCGCCGAAGACAGCGCTGC
CCCCACCCGCCCGAGACCCTGCCTCGGGGGTGGGGGGTGGTCCTGTCAGCCCGTCCCTGG
ACAGCTGTCAGTTTTGCACATGACATTTCTATTGAAACTCTCAGAGACCTTAAAAGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCACAAGTGAAAAGAGAAGGATGCACGGTAGCTCTCGGCAGAGGGGGGCTCCCGGGGC
GGGCCGGGCCGCGGGGGCCGCTCGCGGCGACATGGAGGAAGAGAGCAAGAAGGGCAAGAA
GCCTGGAATTGTGTCGCCGTTTAAACGCGTGTTCCTAAAGGGTGAGAAGAGTAGAGATAA
GAAAGCCCATGAGAAGGTGACAGAGAGGCGCCCTCTGCACACCGTGGTGCTGTCCCTGCC
TGAGCGCGTCGAGCCCGACCGACTGCTGAGCGACTATATCGAGAAGGAGGTGAAGTATTT
AGGTCAGTTAACGTCCATACCAGGGTACCTGAATCCCTCCAGTAGGACGGAAATCCTGCA
TTTCATAGACAACGCAAAGCGAGCCCACCAGCTCCCCGGACACTTGACCCAGGAGCATGA
CGCGGTCATCAGCCTGTCTGCCTACAACGTCAAGCTGGCCTGGAGGGACGGGGAGGACAC
CATCCTCAGGGTGCCCATCCATGACATCGCCGCCGTGTCCTACGTGCGGGATGACGCCTC
GCACCTGGTGGTGCTGAAGACAGCCCAGGACCCCGGCATCTCCCCCAGCCAGAGCTTGTG
TGCAGAAAGTTCCAGAGGCCTCACCACAGGCTCCCTGTCGGAGAGCGGCGTGGGGCCTGT
GGAGGCCTGCTGCCTGGTGATCCTGGCCGCGGAGAGCAAGGTCGCCGCCGAAGAGCTGTG
CTCCCTGCTCGGCCAAGTCTTCCAGATCGTGTACACGGAGTCCACCATCGACTTCCTGGA
CAGAGCCATATTTGACGGGGCCTCGACGCCCACCCACCACCCGTCCCTTCACAGCGACGA
CTCTTCCACAAAGGTGGACCTGAAGGAGCCCTATGAGACGGAAGCCAGCACGTTCACCTT
CCCCGAGTGTGCGCATGCAGGCGGCGTCTCGCCCTTGTCCTTCTGCATGCAGACGGCGCC
CCACGCCAAGACGGTCAGTGAGAGCGAGCTGAGCGCCACGGCTGCCGAGCTGCTGCAGGA
CTACATGCTCACGCTGCGCACCAAGCTGTCATCGCAGGAGATCCAGCAGTTCGCGGCGCT
GCTGCACGAGTACCGCGACGGGGCCTCGGTGCACGAGTTCTGCATCAACCTGCGGCAGCT
CTACGGGGACAGCCGCAAGTTCCTGCTGCTCGGTCTGCGGCCCTTCATCCCTGAGAAGGA
CAGCCAGCACTTCGAGAACTTTCTGGAGACCATCGGCGTGAAGGACGGCCGCGGCATCAT
CACCGACAGCTTTGGCAGGTACCGCCGGACCATGAGCTCCACCTCCACCTCCACCTCCAA
CGGGAACAGGGCCGCGGGCAGCTCCGACGACCAGTCGGCCCCCTCGGAGGGGGACGAGTG
GGACCGCATGATCTCGGACATCAGCAATGACATCGAGGCGCTGGGCTGCAGCATGGACCC
GGACTCGGCCTGACGCCGCCGGGCCCGCGGGCCGCCCTGCTCCTGCTCGTGGGGGGCGCC
GGGCGCGGGGGCTGGACCGTGAAGGCGGAACCCTGGCGCGGGCGCCGAAGACAGCGCTGC
CCCCACCCGCCCGAGACCCTGCCTCGGGGGTGGGGGGTGGTCCTGTCAGCCCGTCCCTGG
ACAGCTGTCAGTTTTGCACATGACATTTCTATTGAAACTCTCAGAGACCTTAAAAGTTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61817425|ref|XP_582898.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61817425|ref|XP_582898.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               569-687, - strand, RNAz p=0.907283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               569-687, - strand, RNAz p=0.907283

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               175-687, gnl|bosTau2|chr18 (21903005-21902505)
               


               
               699-834, gnl|bosTau2|chr4 (43248819-43248954)
               

               
               699-834, gnl|Hg17|chr7 (44882663-44882798)
               

               
               699-834, gnl|Mm7|chr11 (6542755-6542890)
               


               
               897-1039, gnl|bosTau2|chr4 (43250662-43250804)
               

               
               897-1039, gnl|Hg17|chr7 (44886301-44886416)
               

               
               897-1039, gnl|Mm7|chr11 (6545608-6545750)
               


               
               1049-1259, gnl|bosTau2|chr18 (21902287-21902079)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-687, gnl|bosTau2|chr18 (21903005-21902505)
               


               
               699-834, gnl|bosTau2|chr4 (43248819-43248954)
               

               
               699-834, gnl|Hg17|chr7 (44882663-44882798)
               

               
               699-834, gnl|Mm7|chr11 (6542755-6542890)
               


               
               897-1039, gnl|bosTau2|chr4 (43250662-43250804)
               

               
               897-1039, gnl|Hg17|chr7 (44886301-44886416)
               

               
               897-1039, gnl|Mm7|chr11 (6545608-6545750)
               


               
               1049-1259, gnl|bosTau2|chr18 (21902287-21902079)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	175-687, gnl\|bosTau2\|chr18 (21903005-21902505)

	699-834, gnl\|bosTau2\|chr4 (43248819-43248954)
	699-834, gnl\|Hg17\|chr7 (44882663-44882798)
	699-834, gnl\|Mm7\|chr11 (6542755-6542890)

	897-1039, gnl\|bosTau2\|chr4 (43250662-43250804)
	897-1039, gnl\|Hg17\|chr7 (44886301-44886416)
	897-1039, gnl\|Mm7\|chr11 (6545608-6545750)

	1049-1259, gnl\|bosTau2\|chr18 (21902287-21902079)

	cag (0.151194)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)