Non-Coding RNA Search

Ss1.1-Thy1-THY010206E07.5

Sequence:


               
               AGCGCGCAGTGGCGGCAGCAGCGGCGACGGCAGTCACAGCGGCGGCCACAGCGGGGACGC
GAGCGGGGCGGTGACCGTGTGGGAGGTGGTCTCACTCTTGGGGAAGCTGCTGGGCACCGT
CGCCGCGCTGAAGGTGGTTCTGTACCTGCTCCGGGTGTGCCTAGCGATGGCCTGGAAATC
CGGCGGCGCCAGCCACTCGGAGCTAATCCACAACCTCCGCAAAAATGGAATCATCAAAAC
AGATAAAGTATTTGAAGTAATGCTGGCCACAGACCGCTCCCACTATGCAAAATGTAACCC
TTACATGGACTCACCACAATCAATAGGGTTCCAGGCAACAATCAGTGCTCCACACATGCA
TGCGTATGCGCTAGAACTTCTATTTGATCAATTGCATGAAGGAGCTAAAGCTCTCGATGT
AGGATCTGGAAGTGGAATCCTTACTGCATGTTTTGCACGTATGGTTGGACCTAGTGGAAA
AGTCATAGGAATTGACCATATTAAAGAACTAGTAGATGACTCAATAAATAATGTCAGAAA
GGATGATCCAATGCTTTTGTCTTCAGGGAGAGTGCAGCTGGTTGTGGGGGATGGAAGAAT
GGGATATGCCGAAGAAGCCCCTTATGATGCTATTCATGTAGGAGCTGCAGCCCCTGTTGT
ACCCCAGGCACTAATAGACCAGTTAAAGCCTGGTGGAAGATTGATATTGCCAGTTGGTCC
TGCAGGTGGAAATCAGATGTTGGAGCAGTATGACAAGCTGCAAGATGGCAGTGTCAAAAT
GAAACCTCTGATGGGAGTGATATACGTGCCTTTAACAGATAAAGAAAAGCAGTGGTCCAG
GTGGAAGTGATTTTATCTTCTGCTCTTTCTTCTTCCACACATGCAAGGGACGAACTGTAA
AAGCAACATCAGCTTGACCAGTATATACTATTACAGTGGATTGCTCATCTCAGTCCTCAA
AGCTTTTTGAAAATCGACAGCATCACAGCTTGTTTTGGACTTTCTTACACTATTTTCAGC
ATGAAAATGTATGGTTTTGTGGGATTTCTAATTCTTCAAAGAGGCACAAAAGCCAAATTG
GTAGAAGGATGCAAAGTATAAATTTGTGTATTATTACTTTAACATGCCCACGTTTTACTT
TAAATATTTTATTAAAAGAAAGGGTTTTGCAAAATTAGTTTGTGAATTGATTTTGAGGAG
TGGTTTTTCTTTTCTTAGACTGTTAATTCTGTTCTGATGTTAGTTTATCAGATTGCTTTT
GTGCATCAGATAACACCACCATTCACAAGTTAAGATTCTTGGTTTTTGGATGTCTGTTAG
ATGCTACTAAGAAAATAGAGATGAGCTACCTTTTTAAAGCTTTTGATGTGGTGTCATAGA
ATAGCATGTTGTAGATACAATCAGCTGCTTTGTTACCTTAAAACTAAGCGTTTGTAAATA
TTACAACTTAGGAAGAGGACAGGTGTTGTCCCTTAAAACACTCAGCTGTTCAGGTTGGAC
ATGACTGACATAGTTCTTCCTTTCTCTCTTTAGCAGTTATAGGAGACTTGTAGCTCATTC
CTGTTTTTTCTGTTTCTAATCTGCTGCTCATAATATATATGAATTTAACATGCTGTGTAA
GCTGTGTCCTAGTTACTGAACGGTTTATGCAGTGCTGCTTTGCCAAATAAAATTAAAAGT
GAAAGAGGTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCGCAGTGGCGGCAGCAGCGGCGACGGCAGTCACAGCGGCGGCCACAGCGGGGACGC
GAGCGGGGCGGTGACCGTGTGGGAGGTGGTCTCACTCTTGGGGAAGCTGCTGGGCACCGT
CGCCGCGCTGAAGGTGGTTCTGTACCTGCTCCGGGTGTGCCTAGCGATGGCCTGGAAATC
CGGCGGCGCCAGCCACTCGGAGCTAATCCACAACCTCCGCAAAAATGGAATCATCAAAAC
AGATAAAGTATTTGAAGTAATGCTGGCCACAGACCGCTCCCACTATGCAAAATGTAACCC
TTACATGGACTCACCACAATCAATAGGGTTCCAGGCAACAATCAGTGCTCCACACATGCA
TGCGTATGCGCTAGAACTTCTATTTGATCAATTGCATGAAGGAGCTAAAGCTCTCGATGT
AGGATCTGGAAGTGGAATCCTTACTGCATGTTTTGCACGTATGGTTGGACCTAGTGGAAA
AGTCATAGGAATTGACCATATTAAAGAACTAGTAGATGACTCAATAAATAATGTCAGAAA
GGATGATCCAATGCTTTTGTCTTCAGGGAGAGTGCAGCTGGTTGTGGGGGATGGAAGAAT
GGGATATGCCGAAGAAGCCCCTTATGATGCTATTCATGTAGGAGCTGCAGCCCCTGTTGT
ACCCCAGGCACTAATAGACCAGTTAAAGCCTGGTGGAAGATTGATATTGCCAGTTGGTCC
TGCAGGTGGAAATCAGATGTTGGAGCAGTATGACAAGCTGCAAGATGGCAGTGTCAAAAT
GAAACCTCTGATGGGAGTGATATACGTGCCTTTAACAGATAAAGAAAAGCAGTGGTCCAG
GTGGAAGTGATTTTATCTTCTGCTCTTTCTTCTTCCACACATGCAAGGGACGAACTGTAA
AAGCAACATCAGCTTGACCAGTATATACTATTACAGTGGATTGCTCATCTCAGTCCTCAA
AGCTTTTTGAAAATCGACAGCATCACAGCTTGTTTTGGACTTTCTTACACTATTTTCAGC
ATGAAAATGTATGGTTTTGTGGGATTTCTAATTCTTCAAAGAGGCACAAAAGCCAAATTG
GTAGAAGGATGCAAAGTATAAATTTGTGTATTATTACTTTAACATGCCCACGTTTTACTT
TAAATATTTTATTAAAAGAAAGGGTTTTGCAAAATTAGTTTGTGAATTGATTTTGAGGAG
TGGTTTTTCTTTTCTTAGACTGTTAATTCTGTTCTGATGTTAGTTTATCAGATTGCTTTT
GTGCATCAGATAACACCACCATTCACAAGTTAAGATTCTTGGTTTTTGGATGTCTGTTAG
ATGCTACTAAGAAAATAGAGATGAGCTACCTTTTTAAAGCTTTTGATGTGGTGTCATAGA
ATAGCATGTTGTAGATACAATCAGCTGCTTTGTTACCTTAAAACTAAGCGTTTGTAAATA
TTACAACTTAGGAAGAGGACAGGTGTTGTCCCTTAAAACACTCAGCTGTTCAGGTTGGAC
ATGACTGACATAGTTCTTCCTTTCTCTCTTTAGCAGTTATAGGAGACTTGTAGCTCATTC
CTGTTTTTTCTGTTTCTAATCTGCTGCTCATAATATATATGAATTTAACATGCTGTGTAA
GCTGTGTCCTAGTTACTGAACGGTTTATGCAGTGCTGCTTTGCCAAATAAAATTAAAAGT
GAAAGAGGTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|19070126|gb|AAL83718.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19070126|gb|AAL83718.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               39-157, - strand, RNAz p=0.748037
               

               
               398-515, + strand, RNAz p=0.681107

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-157, - strand, RNAz p=0.748037
               

               
               398-515, + strand, RNAz p=0.681107

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               39-788, gnl|bosTau2|chr16 (23827825-23828558)
               


               
               1225-1704, gnl|bosTau2|chrX (10352782-10352320)
               

               
               1225-1704, gnl|Hg17|chrX (151356537-151357027)
               

               
               1225-1704, gnl|Mm7|chr10 (7330894-7330421)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-788, gnl|bosTau2|chr16 (23827825-23828558)
               


               
               1225-1704, gnl|bosTau2|chrX (10352782-10352320)
               

               
               1225-1704, gnl|Hg17|chrX (151356537-151357027)
               

               
               1225-1704, gnl|Mm7|chr10 (7330894-7330421)

Expressed library(ies): 59 entry(ies)

More info

Expressed library(ies): 59 entry(ies)

Help | Less info


               
               ctl (2.60217)
               

               
               tbr (1.54178)
               

               
               ste (1.08167)
               

               
               ldo (0.970026)
               

               
               sme (0.91631)
               

               
               fat (0.884564)
               

               
               spc (0.793561)
               

               
               cbe (0.717703)
               

               
               tes (0.623441)
               

               
               hea (0.613497)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               cbl (0.45919)
               

               
               isp (0.451128)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 59 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (2.60217)
               

               
               tbr (1.54178)
               

               
               ste (1.08167)
               

               
               ldo (0.970026)
               

               
               sme (0.91631)
               

               
               fat (0.884564)
               

               
               spc (0.793561)
               

               
               cbe (0.717703)
               

               
               tes (0.623441)
               

               
               hea (0.613497)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               cbl (0.45919)
               

               
               isp (0.451128)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	39-157, - strand, RNAz p=0.748037
	398-515, + strand, RNAz p=0.681107

	39-788, gnl\|bosTau2\|chr16 (23827825-23828558)

	1225-1704, gnl\|bosTau2\|chrX (10352782-10352320)
	1225-1704, gnl\|Hg17\|chrX (151356537-151357027)
	1225-1704, gnl\|Mm7\|chr10 (7330894-7330421)

	ctl (2.60217)
	tbr (1.54178)
	ste (1.08167)
	ldo (0.970026)
	sme (0.91631)
	fat (0.884564)
	spc (0.793561)
	cbe (0.717703)
	tes (0.623441)
	hea (0.613497)
	pro (0.512033)
	fco (0.471624)
	cbl (0.45919)
	isp (0.451128)
	ova (0.387397)
	ret (0.3862)
	sug (0.381874)
	fty (0.351679)
	rec (0.346141)
	fhi (0.339155)
	vin (0.332557)
	liv (0.292569)
	hlv (0.278513)
	fce (0.271592)
	ssp (0.271039)
	kid (0.259471)
	thg (0.253582)
	ecc (0.23007)
	ece (0.229305)
	mas (0.210305)
	nbm (0.198649)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	sin (0.174948)
	duo (0.172801)
	eye (0.170503)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	cli (0.152812)
	eli (0.151814)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	cst (0.140036)
	pla (0.133672)
	lyg (0.133103)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)