Ss1.1-Thy1-THY010206E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGGGGCGGTGGCGGAGCCGGGGTACGGCGACAGCTGGGCGGCAGGCCGCAGGCGGGG GCAATGGGCAAAGACTATTATCAGACGCTGGGCCTGGCCCGCGGTGCCTCGGACGAGGAG ATCAAGAGAGCCTACCGCCGTCAAGCGCTGCGTTACCACCCGGACAAGAACAAGGAGCCC GGCGCCGAGGAGAAGTTCAAGGAGATCGCCGAGGCCTACGACGTGCTCAGCGACCCGCGC AAGCGCGAGATCTTCGACCGCTACGGGGAGGAAGGCCTGAAGGGTGGTGGCCCAAGTGGT GGGAGCAGCGGTGCTAACGGGACCTCTTTCAGCTACACATTCCATGGAGACCCTCATGCC ATGTTTGCTGAGTTCTTCGGTGGCCGAAATCCCTTTGACACCTTCTTTGGGCAGCGCAAC GGGGAGGAAGGCATGGACATTGATGACCCGTTTTCTGGCTTCCCCATGGGCATGGGTGGC TTCACCACTGCAAACTTTGGCCGCTCCCGCCCTGCACAAGAACCCACCCGAAAGAAGCAA GATCCCCCCGTCACCCATGACCTTAGGGTTTCACTTGAAGAGATCTATAGCGGCTGTACC AAGAAAATGAAAATCTCTCATAAGCGGCTGAACCCCGATGGAAAGAGCATTCGCAACGAA GACAAAATCTTGACCATCGAAGTGAAGCGGGGGTGGAAAGAAGGGACCAAAATCACCTTC CCCAAGGAAGGAGACCAGACCTCCAACAACATTCCAGCCGACATTGTCTTTGTTTTAAAG GACAAGCCACACAATATTTTTAAGAGAGATGGCTCTGATGTCATTTACCCAGCCAGGATT ACCCTTCGGGAGGCTTTGTGTGGCTGTACAGTGAACGTCCCCACTCTGGACGGCAGGACC ATACCCGTTGTGTTCAAAGATGTCATCAGGCCTGGCATGCGGCGAAAAGTTCCTGGAGAA GGCCTCCCTCTTCCCAAAACACCTGAGAAACGCGGGGACCTCATTATTGAGTTTGAAGTA ATCTTCCCTGAGAGGATTCCCCAGACCTCAAGAACCGTCCTTGAGCAGGTTCTTCCGGTA TAATCACCCATGTTCCCCAAGGACTGACCAGGGACCTTTCCAGAGCTCAAGGATTTCTGG ACCGTTCCACCAGTTGTGGATCCGCGAGAGTGTGGGAGGGCCCAGGGAGGGCTTTCGTAC TGCTGAATGTTTTCCAGAGAATATATTACAATCTTTCAAAGTCGTGCACTAGACTAAAGT GGTTTTTCGAGCGATAGGGCGGCAGGTGGTGGGGACAGCAGGAGAAGGCAGTTCGGTCTG CCCCACTGGGTCCTGCAGCCCTTGAGGATGGGCCCACACCTTCCTCCTCCAGGCCCTGCC CAGGGCGAGAGGCAGACCCACAGCTGGACTTGAACTCTCTGTAGTCCCTTTGCTTGCGGA TGTTAGATGTGTCGACCTCCCATCTTGGTTACCAGACCCTGTACACTCCTGTTTCTGTTG TGTGATCAGTTCATGTTTTATTCTGTATTTGTCTCCCACATCTTGCTCTTCCCCTGAAGA ATCCTGTTTTCTCTTTTGCCATCTCAAATTGAGAACCTAGACTATTTTGCAGAACTGCCT GGCCGGCTCCCATAAGCAATACCTCTTGTTCCAGCAGGACCAAGGGAGCCAGCCTCCAGT AAGTGAATAATGTGCAGCTGCCTCTCCCTCAAGGGTCGGAGGCCCTGGCTGGAGCGGGGG GCCCTCTCAACCCCTGGTTCTGAGGCTGAGTACACTCACCTTCCTGTTCTTTAAGGCAAT CTTTTGGCACACCTGGGATTTACCAGCGGCCCAGGTAATTTTTGTTTAATGGACTCTGGA CTCTCTCAAAAGGATCTAATCCTTTTGAATTTTGCACAGCCCTAGATATAATCCCTTTTG ATAAAAGGGTCTTTGCTTCTGATTACAGGAGCACTGTGGAACGTCTGTAAATATGTTTTT ATAATTCCATGTAAAGTTGGTGTGCACTCAAATGAAACCAGTCCACAGCAGCTGCTGTTC TCTGTATAGGGCCATGATGGAATTCAGAAGGAAACTTGGTGGTGGGGGTGGGGGTGGGGA GGGTGTCGGAACAAATGTCTGTTCCCTACAGGCCAGTCTGGTGCTCAGACCTTTAGACTC ATTGTAAGTTGCCACTGCCAACACAAGACCAAAGTGTGTGACTTGTCAATGTGCAGCGTG ACAGCATTAAAGACTGATGCTAAACCTCAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGGGGCGGTGGCGGAGCCGGGGTACGGCGACAGCTGGGCGGCAGGCCGCAGGCGGGG GCAATGGGCAAAGACTATTATCAGACGCTGGGCCTGGCCCGCGGTGCCTCGGACGAGGAG ATCAAGAGAGCCTACCGCCGTCAAGCGCTGCGTTACCACCCGGACAAGAACAAGGAGCCC GGCGCCGAGGAGAAGTTCAAGGAGATCGCCGAGGCCTACGACGTGCTCAGCGACCCGCGC AAGCGCGAGATCTTCGACCGCTACGGGGAGGAAGGCCTGAAGGGTGGTGGCCCAAGTGGT GGGAGCAGCGGTGCTAACGGGACCTCTTTCAGCTACACATTCCATGGAGACCCTCATGCC ATGTTTGCTGAGTTCTTCGGTGGCCGAAATCCCTTTGACACCTTCTTTGGGCAGCGCAAC GGGGAGGAAGGCATGGACATTGATGACCCGTTTTCTGGCTTCCCCATGGGCATGGGTGGC TTCACCACTGCAAACTTTGGCCGCTCCCGCCCTGCACAAGAACCCACCCGAAAGAAGCAA GATCCCCCCGTCACCCATGACCTTAGGGTTTCACTTGAAGAGATCTATAGCGGCTGTACC AAGAAAATGAAAATCTCTCATAAGCGGCTGAACCCCGATGGAAAGAGCATTCGCAACGAA GACAAAATCTTGACCATCGAAGTGAAGCGGGGGTGGAAAGAAGGGACCAAAATCACCTTC CCCAAGGAAGGAGACCAGACCTCCAACAACATTCCAGCCGACATTGTCTTTGTTTTAAAG GACAAGCCACACAATATTTTTAAGAGAGATGGCTCTGATGTCATTTACCCAGCCAGGATT ACCCTTCGGGAGGCTTTGTGTGGCTGTACAGTGAACGTCCCCACTCTGGACGGCAGGACC ATACCCGTTGTGTTCAAAGATGTCATCAGGCCTGGCATGCGGCGAAAAGTTCCTGGAGAA GGCCTCCCTCTTCCCAAAACACCTGAGAAACGCGGGGACCTCATTATTGAGTTTGAAGTA ATCTTCCCTGAGAGGATTCCCCAGACCTCAAGAACCGTCCTTGAGCAGGTTCTTCCGGTA TAATCACCCATGTTCCCCAAGGACTGACCAGGGACCTTTCCAGAGCTCAAGGATTTCTGG ACCGTTCCACCAGTTGTGGATCCGCGAGAGTGTGGGAGGGCCCAGGGAGGGCTTTCGTAC TGCTGAATGTTTTCCAGAGAATATATTACAATCTTTCAAAGTCGTGCACTAGACTAAAGT GGTTTTTCGAGCGATAGGGCGGCAGGTGGTGGGGACAGCAGGAGAAGGCAGTTCGGTCTG CCCCACTGGGTCCTGCAGCCCTTGAGGATGGGCCCACACCTTCCTCCTCCAGGCCCTGCC CAGGGCGAGAGGCAGACCCACAGCTGGACTTGAACTCTCTGTAGTCCCTTTGCTTGCGGA TGTTAGATGTGTCGACCTCCCATCTTGGTTACCAGACCCTGTACACTCCTGTTTCTGTTG TGTGATCAGTTCATGTTTTATTCTGTATTTGTCTCCCACATCTTGCTCTTCCCCTGAAGA ATCCTGTTTTCTCTTTTGCCATCTCAAATTGAGAACCTAGACTATTTTGCAGAACTGCCT GGCCGGCTCCCATAAGCAATACCTCTTGTTCCAGCAGGACCAAGGGAGCCAGCCTCCAGT AAGTGAATAATGTGCAGCTGCCTCTCCCTCAAGGGTCGGAGGCCCTGGCTGGAGCGGGGG GCCCTCTCAACCCCTGGTTCTGAGGCTGAGTACACTCACCTTCCTGTTCTTTAAGGCAAT CTTTTGGCACACCTGGGATTTACCAGCGGCCCAGGTAATTTTTGTTTAATGGACTCTGGA CTCTCTCAAAAGGATCTAATCCTTTTGAATTTTGCACAGCCCTAGATATAATCCCTTTTG ATAAAAGGGTCTTTGCTTCTGATTACAGGAGCACTGTGGAACGTCTGTAAATATGTTTTT ATAATTCCATGTAAAGTTGGTGTGCACTCAAATGAAACCAGTCCACAGCAGCTGCTGTTC TCTGTATAGGGCCATGATGGAATTCAGAAGGAAACTTGGTGGTGGGGGTGGGGGTGGGGA GGGTGTCGGAACAAATGTCTGTTCCCTACAGGCCAGTCTGGTGCTCAGACCTTTAGACTC ATTGTAAGTTGCCACTGCCAACACAAGACCAAAGTGTGTGACTTGTCAATGTGCAGCGTG ACAGCATTAAAGACTGATGCTAAACCTCAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 672-791, - strand, RNAz p=0.991909 | |
| 1289-1398, - strand, RNAz p=0.628889 | |
| 1587-1699, - strand, RNAz p=0.719094 | |
| 1798-2031, - strand, RNAz p=0.987734 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 672-791, - strand, RNAz p=0.991909 | |
| 1289-1398, - strand, RNAz p=0.628889 | |
| 1587-1699, - strand, RNAz p=0.719094 | |
| 1798-2031, - strand, RNAz p=0.987734 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-275, gnl|bosTau2|chr7 (7363783-7364057) | |
| 1-275, gnl|canFam2|chr20 (51129146-51128931) | |
| 1-275, gnl|canFam2|chr20 (51129148-51128933) | |
| 1-275, gnl|danRer3|chr3 (14068906-14068691) | |
| 1-275, gnl|danRer3|chr9 (21876043-21876252) | |
| 1-275, gnl|dasNov1|scaffold_234425 (4172-3963) | |
| 1-275, gnl|dasNov1|scaffold_234425 (4174-3959) | |
| 1-275, gnl|echTel1|scaffold_195295 (1225-1440) | |
| 1-275, gnl|echTel1|scaffold_195295 (1224-1438) | |
| 1-275, gnl|fr1|chrUn (197864150-197863952) | |
| 1-275, gnl|fr1|chrUn (263706913-263707128) | |
| 1-275, gnl|galGal2|chr8 (19169161-19169370) | |
| 1-275, gnl|galGal2|chr8 (19169159-19169371) | |
| 1-275, gnl|hg17|chr19 (14489950-14490165) | |
| 1-275, gnl|Hg17|chr19 (14490224-14489950) | |
| 1-275, gnl|hg17|chr2 (192572228-192572443) | |
| 1-275, gnl|loxAfr1|scaffold_12412 (124994-124779) | |
| 1-275, gnl|loxAfr1|scaffold_12412 (124995-124781) | |
| 1-275, gnl|mm7|chr8 (82186968-82186755) | |
| 1-275, gnl|mm7|chr8 (82186972-82186757) | |
| 1-275, gnl|Mm7|chr8 (82186708-82186970) | |
| 1-275, gnl|monDom2|scaffold_85 (6003663-6003876) | |
| 1-275, gnl|monDom2|scaffold_85 (6003659-6003874) | |
| 1-275, gnl|oryCun1|scaffold_199778 (51634-51421) | |
| 1-275, gnl|oryCun1|scaffold_199778 (51638-51423) | |
| 1-275, gnl|panTro1|chr13 (82466847-82467062) | |
| 1-275, gnl|panTro1|chr20 (15131513-15131718) | |
| 1-275, gnl|rheMac2|chr12 (55630702-55630916) | |
| 1-275, gnl|rheMac2|chr12 (55630701-55630914) | |
| 1-275, gnl|rn3|chr19 (26221960-26222173) | |
| 1-275, gnl|rn3|chr19 (26221956-26222171) | |
| 1-275, gnl|tetNig1|chr12 (3116441-3116240) | |
| 1-275, gnl|tetNig1|chr3 (10925920-10925705) | |
| 1-275, gnl|xenTro1|scaffold_115 (462460-462251) | |
| 1-275, gnl|xenTro1|scaffold_115 (462464-462251) | |
| 529-791, gnl|bosTau2|chr8 (27813489-27813751) | |
| 529-791, gnl|canFam2|chr11 (54624732-54624423) | |
| 529-791, gnl|dasNov1|scaffold_141263 (1719-1413) | |
| 529-791, gnl|echTel1|scaffold_317126 (73925-74234) | |
| 529-791, gnl|galGal2|chrZ_random (7937611-7937302) | |
| 529-791, gnl|hg17|chr9 (21125928-21126215) | |
| 529-791, gnl|Hg17|chr9 (34986540-34986802) | |
| 529-791, gnl|loxAfr1|scaffold_10154 (8486-8805) | |
| 529-791, gnl|mm7|chr4 (42970946-42970637) | |
| 529-791, gnl|Mm7|chr4 (42970618-42970880) | |
| 529-791, gnl|monDom2|scaffold_17 (46931812-46932121) | |
| 529-791, gnl|panTro1|chr11 (21400515-21400802) | |
| 529-791, gnl|rheMac2|chr15 (55845989-55845702) | |
| 529-791, gnl|rn3|chr5 (59445180-59444871) | |
| 529-791, gnl|xenTro1|scaffold_713 (568493-568800) | |
| 851-2249, gnl|bosTau2|chr7 (7366080-7367490) | |
| 851-2249, gnl|Hg17|chr19 (14487984-14486581) | |
| 851-2249, gnl|Mm7|chr8 (82189014-82190330) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-275, gnl|bosTau2|chr7 (7363783-7364057) | |
| 1-275, gnl|canFam2|chr20 (51129146-51128931) | |
| 1-275, gnl|canFam2|chr20 (51129148-51128933) | |
| 1-275, gnl|danRer3|chr3 (14068906-14068691) | |
| 1-275, gnl|danRer3|chr9 (21876043-21876252) | |
| 1-275, gnl|dasNov1|scaffold_234425 (4172-3963) | |
| 1-275, gnl|dasNov1|scaffold_234425 (4174-3959) | |
| 1-275, gnl|echTel1|scaffold_195295 (1225-1440) | |
| 1-275, gnl|echTel1|scaffold_195295 (1224-1438) | |
| 1-275, gnl|fr1|chrUn (197864150-197863952) | |
| 1-275, gnl|fr1|chrUn (263706913-263707128) | |
| 1-275, gnl|galGal2|chr8 (19169161-19169370) | |
| 1-275, gnl|galGal2|chr8 (19169159-19169371) | |
| 1-275, gnl|hg17|chr19 (14489950-14490165) | |
| 1-275, gnl|Hg17|chr19 (14490224-14489950) | |
| 1-275, gnl|hg17|chr2 (192572228-192572443) | |
| 1-275, gnl|loxAfr1|scaffold_12412 (124994-124779) | |
| 1-275, gnl|loxAfr1|scaffold_12412 (124995-124781) | |
| 1-275, gnl|mm7|chr8 (82186968-82186755) | |
| 1-275, gnl|mm7|chr8 (82186972-82186757) | |
| 1-275, gnl|Mm7|chr8 (82186708-82186970) | |
| 1-275, gnl|monDom2|scaffold_85 (6003663-6003876) | |
| 1-275, gnl|monDom2|scaffold_85 (6003659-6003874) | |
| 1-275, gnl|oryCun1|scaffold_199778 (51634-51421) | |
| 1-275, gnl|oryCun1|scaffold_199778 (51638-51423) | |
| 1-275, gnl|panTro1|chr13 (82466847-82467062) | |
| 1-275, gnl|panTro1|chr20 (15131513-15131718) | |
| 1-275, gnl|rheMac2|chr12 (55630702-55630916) | |
| 1-275, gnl|rheMac2|chr12 (55630701-55630914) | |
| 1-275, gnl|rn3|chr19 (26221960-26222173) | |
| 1-275, gnl|rn3|chr19 (26221956-26222171) | |
| 1-275, gnl|tetNig1|chr12 (3116441-3116240) | |
| 1-275, gnl|tetNig1|chr3 (10925920-10925705) | |
| 1-275, gnl|xenTro1|scaffold_115 (462460-462251) | |
| 1-275, gnl|xenTro1|scaffold_115 (462464-462251) | |
| 529-791, gnl|bosTau2|chr8 (27813489-27813751) | |
| 529-791, gnl|canFam2|chr11 (54624732-54624423) | |
| 529-791, gnl|dasNov1|scaffold_141263 (1719-1413) | |
| 529-791, gnl|echTel1|scaffold_317126 (73925-74234) | |
| 529-791, gnl|galGal2|chrZ_random (7937611-7937302) | |
| 529-791, gnl|hg17|chr9 (21125928-21126215) | |
| 529-791, gnl|Hg17|chr9 (34986540-34986802) | |
| 529-791, gnl|loxAfr1|scaffold_10154 (8486-8805) | |
| 529-791, gnl|mm7|chr4 (42970946-42970637) | |
| 529-791, gnl|Mm7|chr4 (42970618-42970880) | |
| 529-791, gnl|monDom2|scaffold_17 (46931812-46932121) | |
| 529-791, gnl|panTro1|chr11 (21400515-21400802) | |
| 529-791, gnl|rheMac2|chr15 (55845989-55845702) | |
| 529-791, gnl|rn3|chr5 (59445180-59444871) | |
| 529-791, gnl|xenTro1|scaffold_713 (568493-568800) | |
| 851-2249, gnl|bosTau2|chr7 (7366080-7367490) | |
| 851-2249, gnl|Hg17|chr19 (14487984-14486581) | |
| 851-2249, gnl|Mm7|chr8 (82189014-82190330) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cag (0.453583) | |
| hea (0.408998) | |
| fcc (0.39557) | |
| ton (0.351) | |
| cje (0.330469) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| tes (0.207814) | |
| eje (0.197668) | |
| sto (0.179824) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lun (0.150489) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.453583) | |
| hea (0.408998) | |
| fcc (0.39557) | |
| ton (0.351) | |
| cje (0.330469) | |
| ecc (0.23007) | |
| mas (0.210305) | |
| tes (0.207814) | |
| eje (0.197668) | |
| sto (0.179824) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lun (0.150489) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| nbm (0.0993246) |