Ss1.1-Thy1-THY010206G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTATTCCGGCGCCTCCACTCCGTCCCCCGCGGGTCTCCTGTGTGTGCAATGGACGGCATC GTCCCAGACATAGCAGTTGGTACAAAGCGGGGATCTGACGAGCTCTTCTCTGCCTGTGTC ACTAACGGACCCTTTATCATGAGCAGCAACTCGGCCTCCACAGCAAATGGAAATGACAGC AAGAAATTCAAGGGGGACAACAGAAGTGCAGGGGTGCCGTCCAGAGTGATCCACATCCGG AAGCTCCCCAGCGATGTCACTGAGGGGGAGGTCATATCCCTGGGACTGCCTTTCGGCAAG GTCACCAATCTCCTGATGCTGAAAGGGAAAAACCAGGCCTTCATCGAGATGAACACTGAG GAGGCCGCCAACACCATGGTGAACTACTACACGTCAGTGACCCCTGTGCTACGCGGCCAG CCCATCTACATCCAGTTTTCCAACCATAAGGAGCTCAAGACAGACAGCTCTCCCAATCAG GCGCGGGCCCAGGCAGCCCTGCAGGCAGTGAACTCAGTCCAGTCAGGAAATCTGGCCCTG GCTGCCTCGGCTGCAGCAGTAGATGCAGGAATGGCAATGGCCGGCCAGAGCCCGGTGCTC AGGATCATTGTAGAGAACCTCTTCTACCCGGTGACCCTGGACGTGCTGCACCAGATTTTC TCCAAGTTTGGCACCGTCCTGAAAATCATCACCTTCACCAAGAACAACCAGTTCCAGGCA CTGCTGCAGTACGCCGACCCTGTGAGCGCCCAGCACGCCAAGCTGTCACTGGACGGGCAA AATATCTACAATGCCTGCTGCACCCTGCGCATCGATTTCTCCAAGCTCACCAGCCTCAAT GTCAAGTACAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTATTCCGGCGCCTCCACTCCGTCCCCCGCGGGTCTCCTGTGTGTGCAATGGACGGCATC GTCCCAGACATAGCAGTTGGTACAAAGCGGGGATCTGACGAGCTCTTCTCTGCCTGTGTC ACTAACGGACCCTTTATCATGAGCAGCAACTCGGCCTCCACAGCAAATGGAAATGACAGC AAGAAATTCAAGGGGGACAACAGAAGTGCAGGGGTGCCGTCCAGAGTGATCCACATCCGG AAGCTCCCCAGCGATGTCACTGAGGGGGAGGTCATATCCCTGGGACTGCCTTTCGGCAAG GTCACCAATCTCCTGATGCTGAAAGGGAAAAACCAGGCCTTCATCGAGATGAACACTGAG GAGGCCGCCAACACCATGGTGAACTACTACACGTCAGTGACCCCTGTGCTACGCGGCCAG CCCATCTACATCCAGTTTTCCAACCATAAGGAGCTCAAGACAGACAGCTCTCCCAATCAG GCGCGGGCCCAGGCAGCCCTGCAGGCAGTGAACTCAGTCCAGTCAGGAAATCTGGCCCTG GCTGCCTCGGCTGCAGCAGTAGATGCAGGAATGGCAATGGCCGGCCAGAGCCCGGTGCTC AGGATCATTGTAGAGAACCTCTTCTACCCGGTGACCCTGGACGTGCTGCACCAGATTTTC TCCAAGTTTGGCACCGTCCTGAAAATCATCACCTTCACCAAGAACAACCAGTTCCAGGCA CTGCTGCAGTACGCCGACCCTGTGAGCGCCCAGCACGCCAAGCTGTCACTGGACGGGCAA AATATCTACAATGCCTGCTGCACCCTGCGCATCGATTTCTCCAAGCTCACCAGCCTCAAT GTCAAGTACAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 522-641, + strand, RNAz p=0.707144 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 522-641, + strand, RNAz p=0.707144 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 161-337, gnl|bosTau2|chr7 (10612231-10612055) | |
| 161-337, gnl|canFam2|chr20 (60954571-60954399) | |
| 161-337, gnl|canFam2|chr20 (60954576-60954386) | |
| 161-337, gnl|danRer3|chr2 (17597302-17597485) | |
| 161-337, gnl|danRer3|chrNA (92350788-92350616) | |
| 161-337, gnl|dasNov1|scaffold_69218 (6450-6278) | |
| 161-337, gnl|dasNov1|scaffold_98814 (7996-7813) | |
| 161-337, gnl|echTel1|scaffold_279523 (58560-58389) | |
| 161-337, gnl|echTel1|scaffold_314550 (39294-39462) | |
| 161-337, gnl|fr1|chrUn (290505120-290505277) | |
| 161-337, gnl|fr1|chrUn (290505112-290505282) | |
| 161-337, gnl|galGal2|chr28 (2719712-2719884) | |
| 161-337, gnl|galGal2|chr28 (2719708-2719891) | |
| 161-337, gnl|hg17|chr14 (64815851-64816022) | |
| 161-337, gnl|hg17|chr19 (755029-755215) | |
| 161-337, gnl|Hg17|chr19 (755033-755209) | |
| 161-337, gnl|loxAfr1|scaffold_84258 (738-566) | |
| 161-337, gnl|loxAfr1|scaffold_84258 (738-566) | |
| 161-337, gnl|mm7|chr10 (79638962-79639139) | |
| 161-337, gnl|Mm7|chr10 (79638966-79639137) | |
| 161-337, gnl|mm7|chr13 (3024373-3024201) | |
| 161-337, gnl|monDom2|scaffold_155 (899923-899751) | |
| 161-337, gnl|monDom2|scaffold_155 (899928-899745) | |
| 161-337, gnl|oryCun1|scaffold_204559 (109233-109061) | |
| 161-337, gnl|oryCun1|scaffold_204559 (109237-109052) | |
| 161-337, gnl|panTro1|chr15 (64419211-64419382) | |
| 161-337, gnl|panTro1|chr20 (811696-811882) | |
| 161-337, gnl|rheMac2|chr19 (539267-539453) | |
| 161-337, gnl|rheMac2|chr7 (128298794-128298965) | |
| 161-337, gnl|rn3|chr4 (107201556-107201728) | |
| 161-337, gnl|rn3|chr7 (11360967-11360790) | |
| 161-337, gnl|tetNig1|chrUn_random (52084185-52084027) | |
| 161-337, gnl|tetNig1|chrUn_random (52084203-52084018) | |
| 161-337, gnl|xenTro1|scaffold_342 (1263231-1263059) | |
| 161-337, gnl|xenTro1|scaffold_342 (1263236-1263053) | |
| 483-654, gnl|bosTau2|chr7 (10611745-10611574) | |
| 483-654, gnl|canFam2|chr20 (60954080-60953893) | |
| 483-654, gnl|danRer3|chr2 (17597848-17598023) | |
| 483-654, gnl|dasNov1|scaffold_98814 (7512-7353) | |
| 483-654, gnl|echTel1|scaffold_314550 (39590-39758) | |
| 483-654, gnl|fr1|chrUn (290505849-290505993) | |
| 483-654, gnl|galGal2|chr28 (2721278-2721455) | |
| 483-654, gnl|hg17|chr19 (755530-755725) | |
| 483-654, gnl|Hg17|chr19 (755531-755702) | |
| 483-654, gnl|loxAfr1|scaffold_84258 (416-249) | |
| 483-654, gnl|mm7|chr10 (79639367-79639546) | |
| 483-654, gnl|Mm7|chr10 (79639368-79639539) | |
| 483-654, gnl|monDom2|scaffold_155 (897368-897189) | |
| 483-654, gnl|oryCun1|scaffold_173045 (12754-12927) | |
| 483-654, gnl|panTro1|chr20 (812197-812392) | |
| 483-654, gnl|rheMac2|chr19 (539771-539966) | |
| 483-654, gnl|rn3|chr7 (11360548-11360364) | |
| 483-654, gnl|tetNig1|chrUn_random (52083428-52083248) | |
| 483-654, gnl|xenTro1|scaffold_342 (1262551-1262372) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-337, gnl|bosTau2|chr7 (10612231-10612055) | |
| 161-337, gnl|canFam2|chr20 (60954571-60954399) | |
| 161-337, gnl|canFam2|chr20 (60954576-60954386) | |
| 161-337, gnl|danRer3|chr2 (17597302-17597485) | |
| 161-337, gnl|danRer3|chrNA (92350788-92350616) | |
| 161-337, gnl|dasNov1|scaffold_69218 (6450-6278) | |
| 161-337, gnl|dasNov1|scaffold_98814 (7996-7813) | |
| 161-337, gnl|echTel1|scaffold_279523 (58560-58389) | |
| 161-337, gnl|echTel1|scaffold_314550 (39294-39462) | |
| 161-337, gnl|fr1|chrUn (290505120-290505277) | |
| 161-337, gnl|fr1|chrUn (290505112-290505282) | |
| 161-337, gnl|galGal2|chr28 (2719712-2719884) | |
| 161-337, gnl|galGal2|chr28 (2719708-2719891) | |
| 161-337, gnl|hg17|chr14 (64815851-64816022) | |
| 161-337, gnl|hg17|chr19 (755029-755215) | |
| 161-337, gnl|Hg17|chr19 (755033-755209) | |
| 161-337, gnl|loxAfr1|scaffold_84258 (738-566) | |
| 161-337, gnl|loxAfr1|scaffold_84258 (738-566) | |
| 161-337, gnl|mm7|chr10 (79638962-79639139) | |
| 161-337, gnl|Mm7|chr10 (79638966-79639137) | |
| 161-337, gnl|mm7|chr13 (3024373-3024201) | |
| 161-337, gnl|monDom2|scaffold_155 (899923-899751) | |
| 161-337, gnl|monDom2|scaffold_155 (899928-899745) | |
| 161-337, gnl|oryCun1|scaffold_204559 (109233-109061) | |
| 161-337, gnl|oryCun1|scaffold_204559 (109237-109052) | |
| 161-337, gnl|panTro1|chr15 (64419211-64419382) | |
| 161-337, gnl|panTro1|chr20 (811696-811882) | |
| 161-337, gnl|rheMac2|chr19 (539267-539453) | |
| 161-337, gnl|rheMac2|chr7 (128298794-128298965) | |
| 161-337, gnl|rn3|chr4 (107201556-107201728) | |
| 161-337, gnl|rn3|chr7 (11360967-11360790) | |
| 161-337, gnl|tetNig1|chrUn_random (52084185-52084027) | |
| 161-337, gnl|tetNig1|chrUn_random (52084203-52084018) | |
| 161-337, gnl|xenTro1|scaffold_342 (1263231-1263059) | |
| 161-337, gnl|xenTro1|scaffold_342 (1263236-1263053) | |
| 483-654, gnl|bosTau2|chr7 (10611745-10611574) | |
| 483-654, gnl|canFam2|chr20 (60954080-60953893) | |
| 483-654, gnl|danRer3|chr2 (17597848-17598023) | |
| 483-654, gnl|dasNov1|scaffold_98814 (7512-7353) | |
| 483-654, gnl|echTel1|scaffold_314550 (39590-39758) | |
| 483-654, gnl|fr1|chrUn (290505849-290505993) | |
| 483-654, gnl|galGal2|chr28 (2721278-2721455) | |
| 483-654, gnl|hg17|chr19 (755530-755725) | |
| 483-654, gnl|Hg17|chr19 (755531-755702) | |
| 483-654, gnl|loxAfr1|scaffold_84258 (416-249) | |
| 483-654, gnl|mm7|chr10 (79639367-79639546) | |
| 483-654, gnl|Mm7|chr10 (79639368-79639539) | |
| 483-654, gnl|monDom2|scaffold_155 (897368-897189) | |
| 483-654, gnl|oryCun1|scaffold_173045 (12754-12927) | |
| 483-654, gnl|panTro1|chr20 (812197-812392) | |
| 483-654, gnl|rheMac2|chr19 (539771-539966) | |
| 483-654, gnl|rn3|chr7 (11360548-11360364) | |
| 483-654, gnl|tetNig1|chrUn_random (52083428-52083248) | |
| 483-654, gnl|xenTro1|scaffold_342 (1262551-1262372) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) |