Ss1.1-Thy1-THY010206H05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGACGATGCTGCGGGCGCCGGATCTTTGTGCGCTCCGCTCCCGGCTCCCGCGTGCCC GCACCTAAAGGAGTAAGCAGGTCATGGCACGCTTAACAAAAAGACGGCAGGCGGATACAA AAGCTATCCAGCATCTTTGGGCAGCCATTGAGATTATAAGAAATCAGAAGCAAATTGCCA ACATTGACCGTATTACAAAGTATATGTCTCGAGTCCACGGTATGCATCCAAAAGAGACCA CCCGGCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTGGAGACGCTGACAGTGGGCT GCAAAGGTTCAAAAGCTGGTATCGAACAGGAAGGATATTGGTTGCCAGGAGATGAGATTA GCATCAAGAAGAAAAACACAAACAAGCAGGAGATGAGCACATACCTGAGGTTCATCGTCT CCCGCATGAAGGAGCGGGCAATCGACCTTAATAAGAAGGGGAAGGACAACAAGCACCCCA TGTACCGGCGGCTGGTGCACTCGGCAGTGGACGTCCCTGCCATACAGGAGAAAGTGAATG AAGGGAAATACCGAAGTTACGAGGAGTTCAAGGCCGATGCTCAGTTGCTGCTCCACAACA CAGTGATTTTCTATGGAGCAGACAGCGAGCAGGCTGACATAGCAAGGATGCTCTACAAAG ACACATGTCACGAGCTGGATGAACTACAGCTTTGCAAGAATTGCTTCTATTTGTCAAATG CTCGTCCTGACAATTGGTTCTGCTATCCCTGCATACCTAATCATGAACTGGTTTGGGCTA AAATGAAAGGTTTTGGGTTCTGGCCAGCCAAAGTCATGCAGAAAGAGGACAATCAGGTTG ACGTCCGCTTCTTCGGTCACCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGACGATGCTGCGGGCGCCGGATCTTTGTGCGCTCCGCTCCCGGCTCCCGCGTGCCC GCACCTAAAGGAGTAAGCAGGTCATGGCACGCTTAACAAAAAGACGGCAGGCGGATACAA AAGCTATCCAGCATCTTTGGGCAGCCATTGAGATTATAAGAAATCAGAAGCAAATTGCCA ACATTGACCGTATTACAAAGTATATGTCTCGAGTCCACGGTATGCATCCAAAAGAGACCA CCCGGCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTGGAGACGCTGACAGTGGGCT GCAAAGGTTCAAAAGCTGGTATCGAACAGGAAGGATATTGGTTGCCAGGAGATGAGATTA GCATCAAGAAGAAAAACACAAACAAGCAGGAGATGAGCACATACCTGAGGTTCATCGTCT CCCGCATGAAGGAGCGGGCAATCGACCTTAATAAGAAGGGGAAGGACAACAAGCACCCCA TGTACCGGCGGCTGGTGCACTCGGCAGTGGACGTCCCTGCCATACAGGAGAAAGTGAATG AAGGGAAATACCGAAGTTACGAGGAGTTCAAGGCCGATGCTCAGTTGCTGCTCCACAACA CAGTGATTTTCTATGGAGCAGACAGCGAGCAGGCTGACATAGCAAGGATGCTCTACAAAG ACACATGTCACGAGCTGGATGAACTACAGCTTTGCAAGAATTGCTTCTATTTGTCAAATG CTCGTCCTGACAATTGGTTCTGCTATCCCTGCATACCTAATCATGAACTGGTTTGGGCTA AAATGAAAGGTTTTGGGTTCTGGCCAGCCAAAGTCATGCAGAAAGAGGACAATCAGGTTG ACGTCCGCTTCTTCGGTCACCACC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 200-359, gnl|bosTau2|chr13 (31837768-31837927) | |
| 200-359, gnl|canFam2|chr2 (37388990-37388801) | |
| 200-359, gnl|danRer3|chr24 (25538377-25538556) | |
| 200-359, gnl|dasNov1|scaffold_243715 (734-924) | |
| 200-359, gnl|fr1|chrUn (216388299-216388131) | |
| 200-359, gnl|galGal2|chr2 (9283611-9283799) | |
| 200-359, gnl|hg17|chr10 (245802-245991) | |
| 200-359, gnl|Hg17|chr10 (245829-245988) | |
| 200-359, gnl|loxAfr1|scaffold_2573 (90220-90409) | |
| 200-359, gnl|mm7|chr13 (9634404-9634215) | |
| 200-359, gnl|Mm7|chr13 (9634375-9634216) | |
| 200-359, gnl|monDom2|scaffold_7 (23149365-23149551) | |
| 200-359, gnl|oryCun1|scaffold_171405 (3216-3405) | |
| 200-359, gnl|panTro1|chr8 (277331-277520) | |
| 200-359, gnl|rheMac2|chr9 (166935-167121) | |
| 200-359, gnl|rn3|chr17 (71360375-71360564) | |
| 200-359, gnl|tetNig1|chr15 (755910-756083) | |
| 200-359, gnl|xenTro1|scaffold_378 (1012255-1012049) | |
| 753-862, gnl|bosTau2|chr13 (31868565-31868674) | |
| 753-862, gnl|canFam2|chr2 (37357257-37357123) | |
| 753-862, gnl|danRer3|chr24 (25550480-25550613) | |
| 753-862, gnl|dasNov1|scaffold_3995 (4120-4231) | |
| 753-862, gnl|echTel1|scaffold_313548 (92183-92317) | |
| 753-862, gnl|fr1|chrUn (216385025-216384901) | |
| 753-862, gnl|galGal2|chr2 (9312439-9312572) | |
| 753-862, gnl|hg17|chr10 (277949-278083) | |
| 753-862, gnl|Hg17|chr10 (277961-278070) | |
| 753-862, gnl|loxAfr1|scaffold_9656 (13813-13947) | |
| 753-862, gnl|mm7|chr13 (9606965-9606831) | |
| 753-862, gnl|Mm7|chr13 (9606951-9606842) | |
| 753-862, gnl|monDom2|scaffold_7 (23191303-23191437) | |
| 753-862, gnl|oryCun1|scaffold_205189 (16779-16877) | |
| 753-862, gnl|panTro1|chr8 (309398-309532) | |
| 753-862, gnl|rheMac2|chr9 (200170-200304) | |
| 753-862, gnl|rn3|chr17 (71386748-71386882) | |
| 753-862, gnl|tetNig1|chr15 (759475-759600) | |
| 753-862, gnl|xenTro1|scaffold_378 (997225-997091) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 200-359, gnl|bosTau2|chr13 (31837768-31837927) | |
| 200-359, gnl|canFam2|chr2 (37388990-37388801) | |
| 200-359, gnl|danRer3|chr24 (25538377-25538556) | |
| 200-359, gnl|dasNov1|scaffold_243715 (734-924) | |
| 200-359, gnl|fr1|chrUn (216388299-216388131) | |
| 200-359, gnl|galGal2|chr2 (9283611-9283799) | |
| 200-359, gnl|hg17|chr10 (245802-245991) | |
| 200-359, gnl|Hg17|chr10 (245829-245988) | |
| 200-359, gnl|loxAfr1|scaffold_2573 (90220-90409) | |
| 200-359, gnl|mm7|chr13 (9634404-9634215) | |
| 200-359, gnl|Mm7|chr13 (9634375-9634216) | |
| 200-359, gnl|monDom2|scaffold_7 (23149365-23149551) | |
| 200-359, gnl|oryCun1|scaffold_171405 (3216-3405) | |
| 200-359, gnl|panTro1|chr8 (277331-277520) | |
| 200-359, gnl|rheMac2|chr9 (166935-167121) | |
| 200-359, gnl|rn3|chr17 (71360375-71360564) | |
| 200-359, gnl|tetNig1|chr15 (755910-756083) | |
| 200-359, gnl|xenTro1|scaffold_378 (1012255-1012049) | |
| 753-862, gnl|bosTau2|chr13 (31868565-31868674) | |
| 753-862, gnl|canFam2|chr2 (37357257-37357123) | |
| 753-862, gnl|danRer3|chr24 (25550480-25550613) | |
| 753-862, gnl|dasNov1|scaffold_3995 (4120-4231) | |
| 753-862, gnl|echTel1|scaffold_313548 (92183-92317) | |
| 753-862, gnl|fr1|chrUn (216385025-216384901) | |
| 753-862, gnl|galGal2|chr2 (9312439-9312572) | |
| 753-862, gnl|hg17|chr10 (277949-278083) | |
| 753-862, gnl|Hg17|chr10 (277961-278070) | |
| 753-862, gnl|loxAfr1|scaffold_9656 (13813-13947) | |
| 753-862, gnl|mm7|chr13 (9606965-9606831) | |
| 753-862, gnl|Mm7|chr13 (9606951-9606842) | |
| 753-862, gnl|monDom2|scaffold_7 (23191303-23191437) | |
| 753-862, gnl|oryCun1|scaffold_205189 (16779-16877) | |
| 753-862, gnl|panTro1|chr8 (309398-309532) | |
| 753-862, gnl|rheMac2|chr9 (200170-200304) | |
| 753-862, gnl|rn3|chr17 (71386748-71386882) | |
| 753-862, gnl|tetNig1|chr15 (759475-759600) | |
| 753-862, gnl|xenTro1|scaffold_378 (997225-997091) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| cje (0.165235) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| cje (0.165235) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| ldo (0.0970026) |