Non-Coding RNA Search

Ss1.1-Thy1-THY010206H07.5

Sequence:


               
               CCTGCGGCGGCGGCAGCAGGGACGGCTGCTGCAGGATCAGGATCCGCAGGCCTGCGCGTG
GGTTTCCGGGGAAGGGAAGGAGAGGAGGAGAGGAAAGCACGCTGCTCCAGCGAGTCGAAC
TAGCAAAGCTCCATCAGTCCGCAGAGAAGAGGAGGAGGGTTGGCGGAGGCAAGGGAGCCA
GAGCCTGTTCGCTGGGTGCCATATCACCCAGCTGCAGTGCCGTCTAGCAAAAGCCACCGC
GGCCCGGGCTGCAGCGGCCAGACGGATGCCAAGGCCACACGGCAGGCGCGGGGACAGCCG
CTGCAGTCGCCGTCCCACGCGGGCTCCGGACATTAGGGGCTGCTGATGAAGTGATTGAGA
AGAAACAGTAAACGCCTTCATTCTGTGACCAGGGCGACATGGATCAGCCATTCACTGTGA
ATGCTCTGAGAAAGTTAGCCGCCATGCCTGACCATACAGACGTTTCCCTCAGCCCGGAAG
AGCGAGTCCGCGCCCTCAGCAAGCTGGGTTGTAATATTACCATCAACGAAGACATCACTC
CGCGGCGCTACTTTCGATCCGGAGTAGAAATGGAGAGGATGGCCTCGGTGTATTTGGAAG
AAGGAAACTTGGAAAATGCCTTTGTTCTTTATAATAAATTTATAACTTTGTTTGTAGAAA
AGCTTCCCAGCCATCGAGATTACCAGCAATGTGCGGTACCCGAAAAGCAGGACATTATGA
AGAAACTGAAGGAGATTGCATTCCCAAGGACAGATGAATTGAAAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCGGCGGCGGCAGCAGGGACGGCTGCTGCAGGATCAGGATCCGCAGGCCTGCGCGTG
GGTTTCCGGGGAAGGGAAGGAGAGGAGGAGAGGAAAGCACGCTGCTCCAGCGAGTCGAAC
TAGCAAAGCTCCATCAGTCCGCAGAGAAGAGGAGGAGGGTTGGCGGAGGCAAGGGAGCCA
GAGCCTGTTCGCTGGGTGCCATATCACCCAGCTGCAGTGCCGTCTAGCAAAAGCCACCGC
GGCCCGGGCTGCAGCGGCCAGACGGATGCCAAGGCCACACGGCAGGCGCGGGGACAGCCG
CTGCAGTCGCCGTCCCACGCGGGCTCCGGACATTAGGGGCTGCTGATGAAGTGATTGAGA
AGAAACAGTAAACGCCTTCATTCTGTGACCAGGGCGACATGGATCAGCCATTCACTGTGA
ATGCTCTGAGAAAGTTAGCCGCCATGCCTGACCATACAGACGTTTCCCTCAGCCCGGAAG
AGCGAGTCCGCGCCCTCAGCAAGCTGGGTTGTAATATTACCATCAACGAAGACATCACTC
CGCGGCGCTACTTTCGATCCGGAGTAGAAATGGAGAGGATGGCCTCGGTGTATTTGGAAG
AAGGAAACTTGGAAAATGCCTTTGTTCTTTATAATAAATTTATAACTTTGTTTGTAGAAA
AGCTTCCCAGCCATCGAGATTACCAGCAATGTGCGGTACCCGAAAAGCAGGACATTATGA
AGAAACTGAAGGAGATTGCATTCCCAAGGACAGATGAATTGAAAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49116800|gb|AAH73344.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49116800|gb|AAH73344.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-349, gnl|bosTau2|chr26 (5343394-5343747)
               

               
               3-349, gnl|Hg17|chr10 (90630002-90630379)
               

               
               3-349, gnl|Mm7|chr19 (33893497-33893833)
               


               
               428-646, gnl|bosTau2|chr26 (5377016-5377234)
               

               
               428-646, gnl|Hg17|chr10 (90655179-90655397)
               

               
               428-646, gnl|Mm7|chr19 (33927775-33927993)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-349, gnl|bosTau2|chr26 (5343394-5343747)
               

               
               3-349, gnl|Hg17|chr10 (90630002-90630379)
               

               
               3-349, gnl|Mm7|chr19 (33893497-33893833)
               


               
               428-646, gnl|bosTau2|chr26 (5377016-5377234)
               

               
               428-646, gnl|Hg17|chr10 (90655179-90655397)
               

               
               428-646, gnl|Mm7|chr19 (33927775-33927993)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sme (0.305437)
               

               
               che (0.136314)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               che (0.136314)
               

               
               bla (0.124347)

	3-349, gnl\|bosTau2\|chr26 (5343394-5343747)
	3-349, gnl\|Hg17\|chr10 (90630002-90630379)
	3-349, gnl\|Mm7\|chr19 (33893497-33893833)

	428-646, gnl\|bosTau2\|chr26 (5377016-5377234)
	428-646, gnl\|Hg17\|chr10 (90655179-90655397)
	428-646, gnl\|Mm7\|chr19 (33927775-33927993)