Non-Coding RNA Search

Ss1.1-Thy1-THY010207C04.5

Sequence:


               
               AAGCGGAGACCGGAGCCGCGAGCGCCACCAGGGCAGCAGCCGCCGCAGCCGCCGCCGCTG
GGCTGAGGAGCCGGAGACGCAGGCGGACGAGGTGGCGGCGGCGGCGGAGCAGGAGCGGGG
ACCGGGCGCCAACGGAGCACGGAGGCGCGGGTGTGCTCTAGAGAAGAAGTCTTCAAATAT
CCTTGCCATATTGATTCTGAGCCATCGGGGGACTCAGGCTTATGAGGAGGTACTGTCACT
TAAAAGAGTGTCTGGTGAAGACGACAAGAAAGAGGGGAAAGGATCGGAAAAAGAAGCTAA
AACACTGTAGAAAACCATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTAT
GGTGAAACATTCAACAATCTATCCATCTCCAGAAGAACTTGAAGCTGTTCAGAATATGGT
GTCTACTGTCGAATGTGCTCTTAAACATGTCTCTGATTGGCTGGATGAAACAAATAAAGG
CACAAAAGCAGAGGGGGAAACAGAAGTGAAGAAGGATGAGGCTGTGGACACCTATTCCAA
GGATCAAGGTGGTCGGACATTGTGTGGTGTAATGAGGATTGGCCTGGTTGCGAAAGGCTT
TGATTAAAGATGTGATATGGACTTGGAGCTGGTTTTAATGTGCAAAGACAAACCCACAGA
ACCCTGTTAAATACAGTTCAACATAATCTTCGCTATTCAGATTCATAAACTCACAGAAGA
TAAATATCACGTGGAACAATGTGCACATGACGCATCTATTATAATTCGGAATACAAAAGA
GCCCACGCTAACTTTGAAGGTGATACTTACTTCCCCTCTAATTACGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCGGAGACCGGAGCCGCGAGCGCCACCAGGGCAGCAGCCGCCGCAGCCGCCGCCGCTG
GGCTGAGGAGCCGGAGACGCAGGCGGACGAGGTGGCGGCGGCGGCGGAGCAGGAGCGGGG
ACCGGGCGCCAACGGAGCACGGAGGCGCGGGTGTGCTCTAGAGAAGAAGTCTTCAAATAT
CCTTGCCATATTGATTCTGAGCCATCGGGGGACTCAGGCTTATGAGGAGGTACTGTCACT
TAAAAGAGTGTCTGGTGAAGACGACAAGAAAGAGGGGAAAGGATCGGAAAAAGAAGCTAA
AACACTGTAGAAAACCATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTAT
GGTGAAACATTCAACAATCTATCCATCTCCAGAAGAACTTGAAGCTGTTCAGAATATGGT
GTCTACTGTCGAATGTGCTCTTAAACATGTCTCTGATTGGCTGGATGAAACAAATAAAGG
CACAAAAGCAGAGGGGGAAACAGAAGTGAAGAAGGATGAGGCTGTGGACACCTATTCCAA
GGATCAAGGTGGTCGGACATTGTGTGGTGTAATGAGGATTGGCCTGGTTGCGAAAGGCTT
TGATTAAAGATGTGATATGGACTTGGAGCTGGTTTTAATGTGCAAAGACAAACCCACAGA
ACCCTGTTAAATACAGTTCAACATAATCTTCGCTATTCAGATTCATAAACTCACAGAAGA
TAAATATCACGTGGAACAATGTGCACATGACGCATCTATTATAATTCGGAATACAAAAGA
GCCCACGCTAACTTTGAAGGTGATACTTACTTCCCCTCTAATTACGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57997204|emb|CAI46219.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57997204|emb|CAI46219.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-478, + strand, RNAz p=0.953482

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-478, + strand, RNAz p=0.953482

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC017732, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC017732, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-157, gnl|bosTau2|chr11 (75961733-75961577)
               

               
               1-157, gnl|hg17|chr9 (123110245-123110425)
               

               
               1-157, gnl|Hg17|chr9 (123110418-123110262)
               

               
               1-157, gnl|loxAfr1|scaffold_56299 (12085-11905)
               

               
               1-157, gnl|mm7|chr2 (37710482-37710659)
               

               
               1-157, gnl|Mm7|chr2 (37710652-37710496)
               

               
               1-157, gnl|monDom2|scaffold_38 (16802654-16802822)
               

               
               1-157, gnl|panTro1|chr11 (107815169-107815349)
               

               
               1-157, gnl|rn3|chr3 (17361658-17361835)
               

               
               1-157, gnl|xenTro1|scaffold_399 (215195-215399)
               


               
               319-566, gnl|bosTau2|chr11 (75735965-75735719)
               

               
               319-566, gnl|Hg17|chr9 (123021061-123020817)
               

               
               319-566, gnl|Mm7|chr2 (37653003-37652760)
               


               
               702-824, gnl|bosTau2|chr11 (75727444-75727322)
               

               
               702-824, gnl|Hg17|chr9 (123011884-123011762)
               

               
               702-824, gnl|Mm7|chr2 (37642884-37642762)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-157, gnl|bosTau2|chr11 (75961733-75961577)
               

               
               1-157, gnl|hg17|chr9 (123110245-123110425)
               

               
               1-157, gnl|Hg17|chr9 (123110418-123110262)
               

               
               1-157, gnl|loxAfr1|scaffold_56299 (12085-11905)
               

               
               1-157, gnl|mm7|chr2 (37710482-37710659)
               

               
               1-157, gnl|Mm7|chr2 (37710652-37710496)
               

               
               1-157, gnl|monDom2|scaffold_38 (16802654-16802822)
               

               
               1-157, gnl|panTro1|chr11 (107815169-107815349)
               

               
               1-157, gnl|rn3|chr3 (17361658-17361835)
               

               
               1-157, gnl|xenTro1|scaffold_399 (215195-215399)
               


               
               319-566, gnl|bosTau2|chr11 (75735965-75735719)
               

               
               319-566, gnl|Hg17|chr9 (123021061-123020817)
               

               
               319-566, gnl|Mm7|chr2 (37653003-37652760)
               


               
               702-824, gnl|bosTau2|chr11 (75727444-75727322)
               

               
               702-824, gnl|Hg17|chr9 (123011884-123011762)
               

               
               702-824, gnl|Mm7|chr2 (37642884-37642762)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	1-157, gnl\|bosTau2\|chr11 (75961733-75961577)
	1-157, gnl\|hg17\|chr9 (123110245-123110425)
	1-157, gnl\|Hg17\|chr9 (123110418-123110262)
	1-157, gnl\|loxAfr1\|scaffold_56299 (12085-11905)
	1-157, gnl\|mm7\|chr2 (37710482-37710659)
	1-157, gnl\|Mm7\|chr2 (37710652-37710496)
	1-157, gnl\|monDom2\|scaffold_38 (16802654-16802822)
	1-157, gnl\|panTro1\|chr11 (107815169-107815349)
	1-157, gnl\|rn3\|chr3 (17361658-17361835)
	1-157, gnl\|xenTro1\|scaffold_399 (215195-215399)

	319-566, gnl\|bosTau2\|chr11 (75735965-75735719)
	319-566, gnl\|Hg17\|chr9 (123021061-123020817)
	319-566, gnl\|Mm7\|chr2 (37653003-37652760)

	702-824, gnl\|bosTau2\|chr11 (75727444-75727322)
	702-824, gnl\|Hg17\|chr9 (123011884-123011762)
	702-824, gnl\|Mm7\|chr2 (37642884-37642762)