Ss1.1-Thy1-THY010207E06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTAAGTGGCGGGAAGAAAGGCGGCCCCTGGCAGGGCTGTGTTAACTCGTCTTCCGTGG TAGTTCTTCGCCCCAAGGATGGAGATGCAGTCCAAGAAGCAAGCCGCAGCTGAGCCCGCG GACTCCGGGGGGGAAGGCAGGCCGCCGCAGGTCGCCGGCAACGATGCGGCGCGTCCCGAG GACCGCATGACCCTACTGCTCAGGCTAAGAACACAGACAAAACAACAACTTTTGGAATAT AAATCAATGGTTGATGCAAATGAAGAAAAAACTCCAGAACAAATAATGCAAGAAAAGCAA ATTGAAACTAAAATTGAAGAACTGGAAAATGAAATCGAAGAGGTGAAAATCGCTTTTGAA ATGAAAAAGCTTGCGTTAGACAGGATGCAACTTTCAACTGCACTAAAAAAAAACCTGGAG AAAACTGACACCAAAACTAGTCCGCTCATGGATAACATGAAACAGATATTAAATCTAAAT AAATTAATAATGAAATCACAGCAGGACACTTGGGATTTGGAGGAAAAAATGCTTGATATT AGAAAGAAGAGATTGCAGTTAAAACAAGCTTCAGAAAGTAAACTTTTAGAAATACAGATG GAGAAGAACAAACAGAAAGATGATTTGGAAAATATGGAAAATTCGGAGAAGATAAAGACT ATACAACGAAACCTACAAAGGGAGATACAGATTACTACAGTTATTCAACATATGTTCCAG AACCTCATTTTGGGGAGTAAAGCCAACTGGGCAGAGGATCCTGCTCTTAAGGAAATTGTT CTGCAGCTTGAGAAGAATCTCACCACAATCCAATGAGAATTCTCTTTTGACATTTTTTGT TTCTGTCTTTGATGTTATTTAAAATGCACATTTCAAGTGAAATGTTTTTTCAGTGTTTTT GGAACTCTTCTACTACTTTTCTTTCTTTTTTTTTTTTTAAGCTTGTGTACTGTAACATGG AATCTATTGTTTTAAATATGATAATTAAAGTGACTGGCATACTCTAAAATAATCTGAAAG TCTTAGCCTTAAAAGTGTCCCCCAAAACATCTAGTCCAGTTAGATTTTTCCACATTCATG GAAGACCCTATTCTCATTTGGGATATTTCTCTGTGTTTGTCAACAAAGTATTGGAAAGTT AGAAAAGCATGGCCGCATCTTTTTTTCAACTATCAATTGTATTTTTATTCAAATAAATCT CATTTTAGTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTAAGTGGCGGGAAGAAAGGCGGCCCCTGGCAGGGCTGTGTTAACTCGTCTTCCGTGG TAGTTCTTCGCCCCAAGGATGGAGATGCAGTCCAAGAAGCAAGCCGCAGCTGAGCCCGCG GACTCCGGGGGGGAAGGCAGGCCGCCGCAGGTCGCCGGCAACGATGCGGCGCGTCCCGAG GACCGCATGACCCTACTGCTCAGGCTAAGAACACAGACAAAACAACAACTTTTGGAATAT AAATCAATGGTTGATGCAAATGAAGAAAAAACTCCAGAACAAATAATGCAAGAAAAGCAA ATTGAAACTAAAATTGAAGAACTGGAAAATGAAATCGAAGAGGTGAAAATCGCTTTTGAA ATGAAAAAGCTTGCGTTAGACAGGATGCAACTTTCAACTGCACTAAAAAAAAACCTGGAG AAAACTGACACCAAAACTAGTCCGCTCATGGATAACATGAAACAGATATTAAATCTAAAT AAATTAATAATGAAATCACAGCAGGACACTTGGGATTTGGAGGAAAAAATGCTTGATATT AGAAAGAAGAGATTGCAGTTAAAACAAGCTTCAGAAAGTAAACTTTTAGAAATACAGATG GAGAAGAACAAACAGAAAGATGATTTGGAAAATATGGAAAATTCGGAGAAGATAAAGACT ATACAACGAAACCTACAAAGGGAGATACAGATTACTACAGTTATTCAACATATGTTCCAG AACCTCATTTTGGGGAGTAAAGCCAACTGGGCAGAGGATCCTGCTCTTAAGGAAATTGTT CTGCAGCTTGAGAAGAATCTCACCACAATCCAATGAGAATTCTCTTTTGACATTTTTTGT TTCTGTCTTTGATGTTATTTAAAATGCACATTTCAAGTGAAATGTTTTTTCAGTGTTTTT GGAACTCTTCTACTACTTTTCTTTCTTTTTTTTTTTTTAAGCTTGTGTACTGTAACATGG AATCTATTGTTTTAAATATGATAATTAAAGTGACTGGCATACTCTAAAATAATCTGAAAG TCTTAGCCTTAAAAGTGTCCCCCAAAACATCTAGTCCAGTTAGATTTTTCCACATTCATG GAAGACCCTATTCTCATTTGGGATATTTCTCTGTGTTTGTCAACAAAGTATTGGAAAGTT AGAAAAGCATGGCCGCATCTTTTTTTCAACTATCAATTGTATTTTTATTCAAATAAATCT CATTTTAGTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 77-186, + strand, RNAz p=0.986347 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 77-186, + strand, RNAz p=0.986347 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-204, gnl|bosTau2|chr20 (7296234-7296034) | |
| 1-204, gnl|canFam2|chr2 (57140663-57140896) | |
| 1-204, gnl|dasNov1|scaffold_214032 (242-517) | |
| 1-204, gnl|echTel1|scaffold_288319 (40269-39980) | |
| 1-204, gnl|hg17|chr5 (68521043-68521294) | |
| 1-204, gnl|Hg17|chr5 (68521143-68521352) | |
| 1-204, gnl|mm7|chr13 (97881567-97881340) | |
| 1-204, gnl|Mm7|chr13 (97881469-97881289) | |
| 1-204, gnl|oryCun1|scaffold_157829 (19384-19148) | |
| 1-204, gnl|panTro1|chr4 (47358924-47358673) | |
| 1-204, gnl|rheMac2|chr6 (67042963-67043215) | |
| 1-204, gnl|rn3|chr2 (31490991-31490780) | |
| 559-720, gnl|bosTau2|chr20 (7278751-7278590) | |
| 559-720, gnl|canFam2|chr2 (57167552-57167760) | |
| 559-720, gnl|dasNov1|scaffold_111902 (3908-4118) | |
| 559-720, gnl|echTel1|scaffold_310158 (654-862) | |
| 559-720, gnl|hg17|chr5 (68539753-68539963) | |
| 559-720, gnl|Hg17|chr5 (68539781-68539942) | |
| 559-720, gnl|mm7|chr13 (97867555-97867345) | |
| 559-720, gnl|Mm7|chr13 (97867525-97867364) | |
| 559-720, gnl|oryCun1|scaffold_157829 (7692-7486) | |
| 559-720, gnl|panTro1|chr4 (47339697-47339487) | |
| 559-720, gnl|rheMac2|chr6 (67061438-67061648) | |
| 559-720, gnl|rn3|chr2 (31479359-31479155) | |
| 852-1212, gnl|bosTau2|chr17 (36033412-36033810) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-204, gnl|bosTau2|chr20 (7296234-7296034) | |
| 1-204, gnl|canFam2|chr2 (57140663-57140896) | |
| 1-204, gnl|dasNov1|scaffold_214032 (242-517) | |
| 1-204, gnl|echTel1|scaffold_288319 (40269-39980) | |
| 1-204, gnl|hg17|chr5 (68521043-68521294) | |
| 1-204, gnl|Hg17|chr5 (68521143-68521352) | |
| 1-204, gnl|mm7|chr13 (97881567-97881340) | |
| 1-204, gnl|Mm7|chr13 (97881469-97881289) | |
| 1-204, gnl|oryCun1|scaffold_157829 (19384-19148) | |
| 1-204, gnl|panTro1|chr4 (47358924-47358673) | |
| 1-204, gnl|rheMac2|chr6 (67042963-67043215) | |
| 1-204, gnl|rn3|chr2 (31490991-31490780) | |
| 559-720, gnl|bosTau2|chr20 (7278751-7278590) | |
| 559-720, gnl|canFam2|chr2 (57167552-57167760) | |
| 559-720, gnl|dasNov1|scaffold_111902 (3908-4118) | |
| 559-720, gnl|echTel1|scaffold_310158 (654-862) | |
| 559-720, gnl|hg17|chr5 (68539753-68539963) | |
| 559-720, gnl|Hg17|chr5 (68539781-68539942) | |
| 559-720, gnl|mm7|chr13 (97867555-97867345) | |
| 559-720, gnl|Mm7|chr13 (97867525-97867364) | |
| 559-720, gnl|oryCun1|scaffold_157829 (7692-7486) | |
| 559-720, gnl|panTro1|chr4 (47339697-47339487) | |
| 559-720, gnl|rheMac2|chr6 (67061438-67061648) | |
| 559-720, gnl|rn3|chr2 (31479359-31479155) | |
| 852-1212, gnl|bosTau2|chr17 (36033412-36033810) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| thg (0.380373) | |
| spl (0.286369) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| bfe (0.149858) | |
| ova (0.129132) | |
| bla (0.124347) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| spl (0.286369) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| bfe (0.149858) | |
| ova (0.129132) | |
| bla (0.124347) | |
| jca (0.11396) |