Non-Coding RNA Search

Ss1.1-Thy1-THY010207H08.5

Sequence:


               
               AGTACCGGAAGGCGGTGTTTCGTTCCGCCGGACAACGCGGCAGCCGCTCTTCAAAGCGAA
GCCGGGAGTTTTTGTTGCGGTTGTCGCCACCATGAGTCGCAGTTATAACGATGAGCTGCA
GTTCTTGGAAAAGATCAATAAAAACTGCTGGAGAATCAAGAAGGGCTTCGTGCCCAACAT
GCAGGTTGAAGGAGTTTTCTATGTGAATGATGCTCTGGAAAAATTAATGTTTGAGGAACT
AAGGAATGCCTGCCGAGGTGGTGGCGTTGGTGGCTTCCTGCCAGCCATGAAACAAATTGG
CAATGTGGCAGCCCTGCCTGGGATCGTTCATCGTTCCATCGGGCTTCCTGATGTCCATTC
TGGTTACGGGTTTGCTATTGGTAATATGGCAGCCTTTGATATGAATGACCCCGAAGCAGT
GGTGTCCCCAGGTGGCGTCGGATTTGACATCAACTGTGGTGTTCGCTTGCTGAGAACCAA
TTTAGACGAAAGTGATGTCCAGCCTGTGAAGGAGCAGCTTGCCCAGGCTATGTTTGACCA
CATTCCTGTTGGGGTGGGGTCCAAAGGCGTCATCCCAATGAATGCCAAAGACTTGGAGGA
GGCCTTGGAGATGGGTGTGGACTGGTCGCTAAGAGAAGGCTACGCCTGGGCCGAAGACAA
GGAGCACTGTGAGGAGTATGGAAGGATGCTGCAAGCTGACCCCAATAAGGTCTCTGCCAG
GGCCAAAAAGAGAGGCCTTCCCCAGCTGGGGACTCTGGGAGCCGGCAACCACTATGCAGA
AATCCAAGTTGTGGATGAGATTTTCAATGAGTATGCGGCTAAGAAAATGGGCATCGACCA
TAAGGGACAGGTGTGTGTGATGATCCACAGTGGAAGCAGAGGCTTGGGCCACCAAGTAGC
CACAGATGCCCTGGTAGCTATGGAAAAAGCCATGAAGAGAGACAAGATTATAGTCAATGA
CCGTCAGTTGGCTTGTGCTCGAATCGCTTCCCCTGAGGGGCAGGACTACCTGAAGGGAAT
GGCAGCGGCTGGGAACTACGCCTGGGTCAACCGCTCTTCCATGACCTTCTTAACCCGTCA
GGCATTTGCCAAGGTCTTCAACACAACCCCTGATGACTTGGACCTACACGTGATCTACGA
TGTCTCTCACAATATTGCCAAAGTCGAACAGCATGTGGTGGACGGAAAGGAGCGGACTCT
GCTAGTACACAGGAAGGGCTCCACCCGGGCTTTCCCTCCTCACCATCCCCTCATTGCCGT
TGATTACCAACTCACTGGACAACCAGTGCTCATTGGTGGCACCATGGGAACCTGTAGCTA
TGTTCTCACTGGCACTGAGCAGGGCATGACTGAGACCTTCGGAACAACCTGCCATGGTGC
GGGTCGTGCACTGTCCCGAGCAAAGTCAAGACGTAATTTGGATTTCCAGGACGTCCTAGA
CAAATTGGCAGATATGGGAATTGCAATCCGTGTTGCCTCACCCAAGCTGGTTATGGAAGA
GGCACCTGAGTCCTATAAGAACGTGACCGATGTGGTAAACACCTGCCATGATGCCGGAAT
CAGCAAGAAGGCCATTAAACTGAGACCGATTGCTGTTATCAAAGGATAGAGCCCTGACCT
CGGCACCAGACACCGCTGCCCCTCGCTGAAGCGGAAGTGGACTGAAACTCTCTTCAGACA
TCAGACTGGAGACCTGCCAGGTTCCAGGGTATGCGGCTGTAGCCGCCTGTTCTAAAACGG
CTGGGCAGGGAGGCGCCTGCTTCAGGAGCCAGTGTTGTAAACTTACCTTCTGGGAGGAGT
CAGGTGGCCCTCATTTGGAAAAGAATGTATATACTTCCTCCTTGATTGTCCCACAGTTTT
TAGGAACATCTCTTGGGGGTGGGGATAGGTTAGGAAGCTGCCTTACTCAGAGAAGTCTAA
TCAGAATGAGGCTCTTTACACCAAGCTCTGTTTCCAGCCTGAGAGGTGTCATGAAGAATG
TTCTATTAAATAGAATGGCTTTGGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACCGGAAGGCGGTGTTTCGTTCCGCCGGACAACGCGGCAGCCGCTCTTCAAAGCGAA
GCCGGGAGTTTTTGTTGCGGTTGTCGCCACCATGAGTCGCAGTTATAACGATGAGCTGCA
GTTCTTGGAAAAGATCAATAAAAACTGCTGGAGAATCAAGAAGGGCTTCGTGCCCAACAT
GCAGGTTGAAGGAGTTTTCTATGTGAATGATGCTCTGGAAAAATTAATGTTTGAGGAACT
AAGGAATGCCTGCCGAGGTGGTGGCGTTGGTGGCTTCCTGCCAGCCATGAAACAAATTGG
CAATGTGGCAGCCCTGCCTGGGATCGTTCATCGTTCCATCGGGCTTCCTGATGTCCATTC
TGGTTACGGGTTTGCTATTGGTAATATGGCAGCCTTTGATATGAATGACCCCGAAGCAGT
GGTGTCCCCAGGTGGCGTCGGATTTGACATCAACTGTGGTGTTCGCTTGCTGAGAACCAA
TTTAGACGAAAGTGATGTCCAGCCTGTGAAGGAGCAGCTTGCCCAGGCTATGTTTGACCA
CATTCCTGTTGGGGTGGGGTCCAAAGGCGTCATCCCAATGAATGCCAAAGACTTGGAGGA
GGCCTTGGAGATGGGTGTGGACTGGTCGCTAAGAGAAGGCTACGCCTGGGCCGAAGACAA
GGAGCACTGTGAGGAGTATGGAAGGATGCTGCAAGCTGACCCCAATAAGGTCTCTGCCAG
GGCCAAAAAGAGAGGCCTTCCCCAGCTGGGGACTCTGGGAGCCGGCAACCACTATGCAGA
AATCCAAGTTGTGGATGAGATTTTCAATGAGTATGCGGCTAAGAAAATGGGCATCGACCA
TAAGGGACAGGTGTGTGTGATGATCCACAGTGGAAGCAGAGGCTTGGGCCACCAAGTAGC
CACAGATGCCCTGGTAGCTATGGAAAAAGCCATGAAGAGAGACAAGATTATAGTCAATGA
CCGTCAGTTGGCTTGTGCTCGAATCGCTTCCCCTGAGGGGCAGGACTACCTGAAGGGAAT
GGCAGCGGCTGGGAACTACGCCTGGGTCAACCGCTCTTCCATGACCTTCTTAACCCGTCA
GGCATTTGCCAAGGTCTTCAACACAACCCCTGATGACTTGGACCTACACGTGATCTACGA
TGTCTCTCACAATATTGCCAAAGTCGAACAGCATGTGGTGGACGGAAAGGAGCGGACTCT
GCTAGTACACAGGAAGGGCTCCACCCGGGCTTTCCCTCCTCACCATCCCCTCATTGCCGT
TGATTACCAACTCACTGGACAACCAGTGCTCATTGGTGGCACCATGGGAACCTGTAGCTA
TGTTCTCACTGGCACTGAGCAGGGCATGACTGAGACCTTCGGAACAACCTGCCATGGTGC
GGGTCGTGCACTGTCCCGAGCAAAGTCAAGACGTAATTTGGATTTCCAGGACGTCCTAGA
CAAATTGGCAGATATGGGAATTGCAATCCGTGTTGCCTCACCCAAGCTGGTTATGGAAGA
GGCACCTGAGTCCTATAAGAACGTGACCGATGTGGTAAACACCTGCCATGATGCCGGAAT
CAGCAAGAAGGCCATTAAACTGAGACCGATTGCTGTTATCAAAGGATAGAGCCCTGACCT
CGGCACCAGACACCGCTGCCCCTCGCTGAAGCGGAAGTGGACTGAAACTCTCTTCAGACA
TCAGACTGGAGACCTGCCAGGTTCCAGGGTATGCGGCTGTAGCCGCCTGTTCTAAAACGG
CTGGGCAGGGAGGCGCCTGCTTCAGGAGCCAGTGTTGTAAACTTACCTTCTGGGAGGAGT
CAGGTGGCCCTCATTTGGAAAAGAATGTATATACTTCCTCCTTGATTGTCCCACAGTTTT
TAGGAACATCTCTTGGGGGTGGGGATAGGTTAGGAAGCTGCCTTACTCAGAGAAGTCTAA
TCAGAATGAGGCTCTTTACACCAAGCTCTGTTTCCAGCCTGAGAGGTGTCATGAAGAATG
TTCTATTAAATAGAATGGCTTTGGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7657015|ref|NP_055121.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7657015|ref|NP_055121.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               539-656, - strand, RNAz p=0.97733

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               539-656, - strand, RNAz p=0.97733

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               80-1035, gnl|bosTau2|chr9 (52242060-52243009)
               

               
               80-1035, gnl|Hg17|chr22 (31132691-31116661)
               

               
               80-1035, gnl|Mm7|chr10 (85515925-85502072)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-1035, gnl|bosTau2|chr9 (52242060-52243009)
               

               
               80-1035, gnl|Hg17|chr22 (31132691-31116661)
               

               
               80-1035, gnl|Mm7|chr10 (85515925-85502072)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               che (0.408942)
               

               
               nbm (0.297974)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               pgl (0.236967)
               

               
               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.408942)
               

               
               nbm (0.297974)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               pgl (0.236967)
               

               
               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	80-1035, gnl\|bosTau2\|chr9 (52242060-52243009)
	80-1035, gnl\|Hg17\|chr22 (31132691-31116661)
	80-1035, gnl\|Mm7\|chr10 (85515925-85502072)

	che (0.408942)
	nbm (0.297974)
	hyp (0.285673)
	cga (0.279096)
	bla (0.248694)
	eep (0.245128)
	pgl (0.236967)
	nlu (0.191681)
	cje (0.165235)
	csp (0.161186)
	nca (0.136874)
	cov (0.132153)
	kid (0.129735)
	ese (0.126502)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)