Ss1.1-Tra1-TCH01A010008.5.5
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GAGTTCCGGGGATCCGAGCCCACCGCGCCGGGGACGGGGCGGGTCCTCCCCTCCGTGGCC
TCCTAGGCTCTGCCGAGGCGGTGGGAAGCAGGGCCGCCCAGCCCGGAGTCCCCGCGGGTG
GAGAGGAGCGTGGGCGGGGCTCCCGGAGGTGGGGTCCCCGGGGCGGGGAGCGCCGAGTCC
GCCGGCCGGTGCACAGTCTCGCTGGAGTCCGACAGAGCCCACACTGGTCCCGAGATGACG
GCGAGCAAGCGGGTGGCAAAGGAGCTGGAGGATCTTCAGAAGGAGCTTCCCAGGTACCTC
GGGAAGCTGTTCAGCGATGATGCCAACGTGTTGGTGTGGCACGCGCTCCTCCTGCCTGAG
AAACCGCCCTACAACCTCAGGGCCTTCAACCTTCGCATCAGCTTCCCGGAGGAGTACCCA
TTCAAGCCCCCGACGGTGACGTTTACAACTAGGATCTACCACCCCAACGTGGACAGCGAA
GGCCAGGTGTGTCTGCCCATCATCAGCAACGAGAACTGGAAGCCCTGCACCAAGACCTGC
CAAGTCCTGGAGGCCCTCAACGTGCTGGTGAATAGACCAGAGCCGGGGCAGCCCCTTCGG
GTGGAGCTCGCCGACCAGCTGACCCAGGACCCGGAGCTGTTCAACAGGAAGGCCGAAGAG
TTCACCCTCCAGTTCGGAGTGGACCGGCCCTCCTAACTCTGCCCGTGACCCGTCTCTGCA
CCAGATCCTCTCTGCGTGATGGACGGACATACCGCACGGATGGGGAGCCAGAGCCCCTTT
GTGCTCCTGCTCATTTCTTCCAAGTTTTCCCTTGTAGGCTGTTAGTCATTAGTGTGTGTG
TGTGCGTGTGTGTCCGTGTGTGAACGCGCAGGTGTGTGTATGGGGGGGGGTACAGATGTT
TGTGGTATGTGGACCCAGGGCCCACAGGTGCGCTTGTCCCACTCCCTTTTTCTGCTCCAG
AGCCAGGGACATCGAGGTTTGCAGAGTCACAGGCCAGCTCTTCTGGACTCTGTGAGATGG
GATTCCTGGTTTCGCTAGTTGGTCCATCGTAGAGACTCAGGCCACCTTCCAAGCCAGCTT
GTGGGCAGTGAGCCCAGCAGCTGACCGGAATCCCGCGCCATGGTCCAGGCACGGGGTGGA
GGGGTGGTGGGGTGTATGGGTAGGAGGCAGGTCCTAGGGTGGGGATCCTTTTCACAATGA
ATCATTTTGTTGATTGAGTGAATGAGATCAGCCAGACCGCTGATAGGTACACATAGATTT
AGGTGCAAAACCTTTTCTCTTCCACTGATGAAACATAAAGTGAAAAATCTAATCTCAGAG
TTTCCTCATGGCCCAGTGGGTTCAGGATCTGACATTGTCACTGCAGTGGCTTGGGTTGCT
GCTGTGGCACGGGTTCGATCCCCGGCCCAGAAACGTCCACATGCCTACATGGTTTCAAAA
CCACTTGCTGTCCCATTAGGTTCTGGTTCCTGGGGACCAGGCTTTAAGCAGAGAGAGGTC
TCCCCTCCAGCTTCCAGTCCGGGGGGAACCACGGCGACCATGTGCTTGCCCAGCCATTAA
AGTCACAGATGAACTGTGAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGTTCCGGGGATCCGAGCCCACCGCGCCGGGGACGGGGCGGGTCCTCCCCTCCGTGGCC
TCCTAGGCTCTGCCGAGGCGGTGGGAAGCAGGGCCGCCCAGCCCGGAGTCCCCGCGGGTG
GAGAGGAGCGTGGGCGGGGCTCCCGGAGGTGGGGTCCCCGGGGCGGGGAGCGCCGAGTCC
GCCGGCCGGTGCACAGTCTCGCTGGAGTCCGACAGAGCCCACACTGGTCCCGAGATGACG
GCGAGCAAGCGGGTGGCAAAGGAGCTGGAGGATCTTCAGAAGGAGCTTCCCAGGTACCTC
GGGAAGCTGTTCAGCGATGATGCCAACGTGTTGGTGTGGCACGCGCTCCTCCTGCCTGAG
AAACCGCCCTACAACCTCAGGGCCTTCAACCTTCGCATCAGCTTCCCGGAGGAGTACCCA
TTCAAGCCCCCGACGGTGACGTTTACAACTAGGATCTACCACCCCAACGTGGACAGCGAA
GGCCAGGTGTGTCTGCCCATCATCAGCAACGAGAACTGGAAGCCCTGCACCAAGACCTGC
CAAGTCCTGGAGGCCCTCAACGTGCTGGTGAATAGACCAGAGCCGGGGCAGCCCCTTCGG
GTGGAGCTCGCCGACCAGCTGACCCAGGACCCGGAGCTGTTCAACAGGAAGGCCGAAGAG
TTCACCCTCCAGTTCGGAGTGGACCGGCCCTCCTAACTCTGCCCGTGACCCGTCTCTGCA
CCAGATCCTCTCTGCGTGATGGACGGACATACCGCACGGATGGGGAGCCAGAGCCCCTTT
GTGCTCCTGCTCATTTCTTCCAAGTTTTCCCTTGTAGGCTGTTAGTCATTAGTGTGTGTG
TGTGCGTGTGTGTCCGTGTGTGAACGCGCAGGTGTGTGTATGGGGGGGGGTACAGATGTT
TGTGGTATGTGGACCCAGGGCCCACAGGTGCGCTTGTCCCACTCCCTTTTTCTGCTCCAG
AGCCAGGGACATCGAGGTTTGCAGAGTCACAGGCCAGCTCTTCTGGACTCTGTGAGATGG
GATTCCTGGTTTCGCTAGTTGGTCCATCGTAGAGACTCAGGCCACCTTCCAAGCCAGCTT
GTGGGCAGTGAGCCCAGCAGCTGACCGGAATCCCGCGCCATGGTCCAGGCACGGGGTGGA
GGGGTGGTGGGGTGTATGGGTAGGAGGCAGGTCCTAGGGTGGGGATCCTTTTCACAATGA
ATCATTTTGTTGATTGAGTGAATGAGATCAGCCAGACCGCTGATAGGTACACATAGATTT
AGGTGCAAAACCTTTTCTCTTCCACTGATGAAACATAAAGTGAAAAATCTAATCTCAGAG
TTTCCTCATGGCCCAGTGGGTTCAGGATCTGACATTGTCACTGCAGTGGCTTGGGTTGCT
GCTGTGGCACGGGTTCGATCCCCGGCCCAGAAACGTCCACATGCCTACATGGTTTCAAAA
CCACTTGCTGTCCCATTAGGTTCTGGTTCCTGGGGACCAGGCTTTAAGCAGAGAGAGGTC
TCCCCTCCAGCTTCCAGTCCGGGGGGAACCACGGCGACCATGTGCTTGCCCAGCCATTAA
AGTCACAGATGAACTGTGAAAAAA
|
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gi|57099559|ref|XP_533174.1| |
Protein identifier
|
gi|57099559|ref|XP_533174.1| |
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260-361, gnl|bosTau2|chr15 (50563706-50563807) |
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260-361, gnl|canFam2|chr18 (41674499-41674322) |
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260-361, gnl|dasNov1|scaffold_118974 (4915-4742) |
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260-361, gnl|echTel1|scaffold_264828 (3141-2965) |
|
260-361, gnl|hg17|chr11 (57084350-57084530) |
|
260-361, gnl|Hg17|chr11 (57084483-57084382) |
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260-361, gnl|loxAfr1|scaffold_11027 (10141-9962) |
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260-361, gnl|mm7|chr2 (84646617-84646451) |
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260-361, gnl|Mm7|chr2 (84646493-84646594) |
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260-361, gnl|panTro1|chr9 (57993611-57993791) |
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260-361, gnl|rheMac2|chr14 (15857289-15857108) |
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260-361, gnl|rn3|chr3 (67901946-67901780) |
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260-361, gnl|xenTro1|scaffold_169 (1896032-1895855) |
| |
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537-821, gnl|bosTau2|chr15 (50570184-50570463) |
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537-821, gnl|Hg17|chr11 (57076566-57076275) |
|
537-821, gnl|Mm7|chr2 (84652714-84652976) |
| |
|
872-1077, gnl|bosTau2|chr15 (50570467-50570667) |
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872-1077, gnl|Hg17|chr11 (57076271-57076071) |
|
872-1077, gnl|Mm7|chr2 (84653001-84653178) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
260-361, gnl|bosTau2|chr15 (50563706-50563807) |
|
260-361, gnl|canFam2|chr18 (41674499-41674322) |
|
260-361, gnl|dasNov1|scaffold_118974 (4915-4742) |
|
260-361, gnl|echTel1|scaffold_264828 (3141-2965) |
|
260-361, gnl|hg17|chr11 (57084350-57084530) |
|
260-361, gnl|Hg17|chr11 (57084483-57084382) |
|
260-361, gnl|loxAfr1|scaffold_11027 (10141-9962) |
|
260-361, gnl|mm7|chr2 (84646617-84646451) |
|
260-361, gnl|Mm7|chr2 (84646493-84646594) |
|
260-361, gnl|panTro1|chr9 (57993611-57993791) |
|
260-361, gnl|rheMac2|chr14 (15857289-15857108) |
|
260-361, gnl|rn3|chr3 (67901946-67901780) |
|
260-361, gnl|xenTro1|scaffold_169 (1896032-1895855) |
| |
|
537-821, gnl|bosTau2|chr15 (50570184-50570463) |
|
537-821, gnl|Hg17|chr11 (57076566-57076275) |
|
537-821, gnl|Mm7|chr2 (84652714-84652976) |
| |
|
872-1077, gnl|bosTau2|chr15 (50570467-50570667) |
|
872-1077, gnl|Hg17|chr11 (57076271-57076071) |
|
872-1077, gnl|Mm7|chr2 (84653001-84653178) |
|
cty (1.0408) |
|
cbl (0.688784) |
|
nje (0.49776) |
|
mas (0.42061) |
|
duo (0.345602) |
|
csp (0.322373) |
|
cag (0.302389) |
|
cga (0.279096) |
|
med (0.232504) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
cje (0.165235) |
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lnt (0.142308) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
cty (1.0408) |
|
cbl (0.688784) |
|
nje (0.49776) |
|
mas (0.42061) |
|
duo (0.345602) |
|
csp (0.322373) |
|
cag (0.302389) |
|
cga (0.279096) |
|
med (0.232504) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
cje (0.165235) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
ecc (0.115035) |
|
eje (0.0988338) |
