Ss1.1-Tra1-TCH01A010077.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTCCCTTCTCGGCAAGATGGCGGTGCCCAGTTGCTGTGTGTCAGGTTTCTGGGTCCGG AGTTCCGGACAGTGTCTGGGGAGTCTCTTCACTTTCGTCTCAAAGCGACTTTGCTCCGCT GCTGCCGCCTCTAGGCCCATGGATGCCCAGCAACTGGCAGAGAGGCTCCGAGCCCAGAAA GAGAAACAAAAGGCGAAGGGGCCGGTGCCCACGAACCCTGTTCAGCGGAGAGTACGAGAA CTAGTGCGGTTCACAGAGCAGCTGCAGCGAGTCCACCCCAATGTGCTTGCTAAGGCGCTG AGCCGAGGAATTGTCCACCAGGACAAGGACCTGCTGGTCATCAATAAGCCTTATGGTCTC CCTGTGCATGGTGGCCCTGGGGTCCAGCTCTGCATCAGTGATGTATTACCCATCCTGGCA AAGATTCTTCATGGCCACAAGGCAGAGCCCCTGCATCTCTGCCATCGTCTAGACAAGGAA ACTACAGGCGTAATGGTGTTGGCTTGGGAAAAAGAAGTGGCACATCAAGTCCAAGAGTTG TTTAGAACCCGTCAGGTGGCAAAGAAGTACTGGGCTATTACTGTGTGCGTCCCGGTGCCC TCAGCAGGAGTCGTGGACATCCCCATCATCGAGAAGGAGGTGCAGGGCCAGCAGCAGCAC CACAAGATGACGCTATGCCCGAGCTACCGCATGGACAACGGGAAGATGGTGAGAGTACGG ACCAGCCGGAACGCACATCTGGCCGTAACTCAGTACCAGGTGCTAAGCAGCACCCTCTCC TCTGCTCTCTTGGAGCTCCAGCCTGTTACTGGAATAAAACATCAGCTTCGAGTTCACCTG TCTTTTGGATTGGATTGCCCAATCCTCGGTGATCATAAGTACTCAGACTGGAACAGGCTG GCCCCTCAGAAGCTGTCTGTTGGTGTCCTGAAGAAGCTAGGGCTGCCACAGTCCAAGGCC CGCCACATCCCCCTGCACCTGCATGCCCGCCAGCTCATCCTGCCTGCCCTGCAGTCCAGG AAGGAGGAACTCAACTTGGTCTGCAAGCCTCCTCGATACTTTGTCCATTCCCTGCGTCGT CTGGGCTTAAAGATGCCGAGTCACGATCAAAATGGGGATGAGGAAGCCTCACACCCAGGA CCACAGTGAAGATAGCCAGTTTGCCCTGAATTCTTCACTCTGTTTGACTCTGCTAACTTC TCACCTGGGACAGACTCCAGAAGAGCCGGGTGTGATGAGTTAGAGAAACAGCTGCTTCGG GGCTTTTACTGGAGACTAGCATCTGTTTGCTAACACTTTGACCACACTCCGGAAAAGTCA TCAGGCAGTCTCCCTGCCTCAAAGTGGAAGAGCACCCAGGACCAGGAGATCTGAAGCACA GAATCTCTGATCAGAAACTGTTTTCATTCAACAATAAAGCTCTTGGTCTCTTGGCAAGGT TCCTGGGGTTGAAAAGAACCTAGTGGTTATCTAGCTCCTAGAGAGGTTCAGAAGCATCTG GCTGCTGTCCTCGGGGAGCTGTGGGGTCTGTTGGTACAGGCTTTCTGCTTGGTTTAGCCT CCGATTTGGTAGACTGCAAGCATTTTTTCCAGCCTCAGCCTGGGAACCATTTTGGGTTTG GGATTGTGGGGTCCGTGAAAGGGTTGTTTGGTGAGCAAGGAAAGCAGATGTAAATGGGTG GCGGGTAGCAAGTGCACCAGGCAGGGGTAAGGGTGCTGTGGGGGGGGCCCCCCGGTTGAG GGGCCAGTTTTTAGCCCCAGCTGAGGGTTGCTTTGTGGGAACAGATTTTTTTAACTTTTT TCAGGGGTTGGGAAACCCAAAAATTTTTGTGAAATTTTATATGGTATTGCTAATTAAATC AAAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTCCCTTCTCGGCAAGATGGCGGTGCCCAGTTGCTGTGTGTCAGGTTTCTGGGTCCGG AGTTCCGGACAGTGTCTGGGGAGTCTCTTCACTTTCGTCTCAAAGCGACTTTGCTCCGCT GCTGCCGCCTCTAGGCCCATGGATGCCCAGCAACTGGCAGAGAGGCTCCGAGCCCAGAAA GAGAAACAAAAGGCGAAGGGGCCGGTGCCCACGAACCCTGTTCAGCGGAGAGTACGAGAA CTAGTGCGGTTCACAGAGCAGCTGCAGCGAGTCCACCCCAATGTGCTTGCTAAGGCGCTG AGCCGAGGAATTGTCCACCAGGACAAGGACCTGCTGGTCATCAATAAGCCTTATGGTCTC CCTGTGCATGGTGGCCCTGGGGTCCAGCTCTGCATCAGTGATGTATTACCCATCCTGGCA AAGATTCTTCATGGCCACAAGGCAGAGCCCCTGCATCTCTGCCATCGTCTAGACAAGGAA ACTACAGGCGTAATGGTGTTGGCTTGGGAAAAAGAAGTGGCACATCAAGTCCAAGAGTTG TTTAGAACCCGTCAGGTGGCAAAGAAGTACTGGGCTATTACTGTGTGCGTCCCGGTGCCC TCAGCAGGAGTCGTGGACATCCCCATCATCGAGAAGGAGGTGCAGGGCCAGCAGCAGCAC CACAAGATGACGCTATGCCCGAGCTACCGCATGGACAACGGGAAGATGGTGAGAGTACGG ACCAGCCGGAACGCACATCTGGCCGTAACTCAGTACCAGGTGCTAAGCAGCACCCTCTCC TCTGCTCTCTTGGAGCTCCAGCCTGTTACTGGAATAAAACATCAGCTTCGAGTTCACCTG TCTTTTGGATTGGATTGCCCAATCCTCGGTGATCATAAGTACTCAGACTGGAACAGGCTG GCCCCTCAGAAGCTGTCTGTTGGTGTCCTGAAGAAGCTAGGGCTGCCACAGTCCAAGGCC CGCCACATCCCCCTGCACCTGCATGCCCGCCAGCTCATCCTGCCTGCCCTGCAGTCCAGG AAGGAGGAACTCAACTTGGTCTGCAAGCCTCCTCGATACTTTGTCCATTCCCTGCGTCGT CTGGGCTTAAAGATGCCGAGTCACGATCAAAATGGGGATGAGGAAGCCTCACACCCAGGA CCACAGTGAAGATAGCCAGTTTGCCCTGAATTCTTCACTCTGTTTGACTCTGCTAACTTC TCACCTGGGACAGACTCCAGAAGAGCCGGGTGTGATGAGTTAGAGAAACAGCTGCTTCGG GGCTTTTACTGGAGACTAGCATCTGTTTGCTAACACTTTGACCACACTCCGGAAAAGTCA TCAGGCAGTCTCCCTGCCTCAAAGTGGAAGAGCACCCAGGACCAGGAGATCTGAAGCACA GAATCTCTGATCAGAAACTGTTTTCATTCAACAATAAAGCTCTTGGTCTCTTGGCAAGGT TCCTGGGGTTGAAAAGAACCTAGTGGTTATCTAGCTCCTAGAGAGGTTCAGAAGCATCTG GCTGCTGTCCTCGGGGAGCTGTGGGGTCTGTTGGTACAGGCTTTCTGCTTGGTTTAGCCT CCGATTTGGTAGACTGCAAGCATTTTTTCCAGCCTCAGCCTGGGAACCATTTTGGGTTTG GGATTGTGGGGTCCGTGAAAGGGTTGTTTGGTGAGCAAGGAAAGCAGATGTAAATGGGTG GCGGGTAGCAAGTGCACCAGGCAGGGGTAAGGGTGCTGTGGGGGGGGCCCCCCGGTTGAG GGGCCAGTTTTTAGCCCCAGCTGAGGGTTGCTTTGTGGGAACAGATTTTTTTAACTTTTT TCAGGGGTTGGGAAACCCAAAAATTTTTGTGAAATTTTATATGGTATTGCTAATTAAATC AAAATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 370-528, + strand, RNAz p=0.86248 | |
| 1436-1555, - strand, RNAz p=0.885715 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 370-528, + strand, RNAz p=0.86248 | |
| 1436-1555, - strand, RNAz p=0.885715 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-207, gnl|bosTau2|chr29 (21622224-21622433) | |
| 1-207, gnl|Hg17|chr11 (125586761-125586552) | |
| 1-207, gnl|Mm7|chr9 (35162682-35162883) | |
| 370-573, gnl|bosTau2|chr29 (21624177-21624380) | |
| 370-573, gnl|canFam2|chr5 (11305299-11305044) | |
| 370-573, gnl|dasNov1|scaffold_23028 (8984-9238) | |
| 370-573, gnl|echTel1|scaffold_276309 (46062-45807) | |
| 370-573, gnl|fr1|chrUn (163771895-163772126) | |
| 370-573, gnl|galGal2|chr24 (338423-338646) | |
| 370-573, gnl|hg17|chr11 (125584619-125584874) | |
| 370-573, gnl|Hg17|chr11 (125584828-125584625) | |
| 370-573, gnl|loxAfr1|scaffold_17243 (30955-31209) | |
| 370-573, gnl|mm7|chr9 (35164977-35164732) | |
| 370-573, gnl|Mm7|chr9 (35164766-35164969) | |
| 370-573, gnl|monDom2|scaffold_15 (13107239-13107495) | |
| 370-573, gnl|oryCun1|scaffold_213557 (50104-49849) | |
| 370-573, gnl|panTro1|chr9 (127665703-127665958) | |
| 370-573, gnl|rheMac2|chr14 (124352464-124352719) | |
| 370-573, gnl|rn3|chr8 (35060862-35060604) | |
| 665-812, gnl|bosTau2|chr29 (25698323-25698470) | |
| 665-812, gnl|Hg17|chr11 (125580719-125580572) | |
| 665-812, gnl|Mm7|chr9 (35167502-35167649) | |
| 907-1555, gnl|bosTau2|chr29 (25700501-25701153) | |
| 907-1555, gnl|Hg17|chr11 (125578765-125578094) | |
| 907-1555, gnl|Mm7|chr9 (35169863-35170450) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-207, gnl|bosTau2|chr29 (21622224-21622433) | |
| 1-207, gnl|Hg17|chr11 (125586761-125586552) | |
| 1-207, gnl|Mm7|chr9 (35162682-35162883) | |
| 370-573, gnl|bosTau2|chr29 (21624177-21624380) | |
| 370-573, gnl|canFam2|chr5 (11305299-11305044) | |
| 370-573, gnl|dasNov1|scaffold_23028 (8984-9238) | |
| 370-573, gnl|echTel1|scaffold_276309 (46062-45807) | |
| 370-573, gnl|fr1|chrUn (163771895-163772126) | |
| 370-573, gnl|galGal2|chr24 (338423-338646) | |
| 370-573, gnl|hg17|chr11 (125584619-125584874) | |
| 370-573, gnl|Hg17|chr11 (125584828-125584625) | |
| 370-573, gnl|loxAfr1|scaffold_17243 (30955-31209) | |
| 370-573, gnl|mm7|chr9 (35164977-35164732) | |
| 370-573, gnl|Mm7|chr9 (35164766-35164969) | |
| 370-573, gnl|monDom2|scaffold_15 (13107239-13107495) | |
| 370-573, gnl|oryCun1|scaffold_213557 (50104-49849) | |
| 370-573, gnl|panTro1|chr9 (127665703-127665958) | |
| 370-573, gnl|rheMac2|chr14 (124352464-124352719) | |
| 370-573, gnl|rn3|chr8 (35060862-35060604) | |
| 665-812, gnl|bosTau2|chr29 (25698323-25698470) | |
| 665-812, gnl|Hg17|chr11 (125580719-125580572) | |
| 665-812, gnl|Mm7|chr9 (35167502-35167649) | |
| 907-1555, gnl|bosTau2|chr29 (25700501-25701153) | |
| 907-1555, gnl|Hg17|chr11 (125578765-125578094) | |
| 907-1555, gnl|Mm7|chr9 (35169863-35170450) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| duo (0.345602) | |
| nms (0.213858) | |
| mcp (0.170648) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| nms (0.213858) | |
| mcp (0.170648) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |