Non-Coding RNA Search

Ss1.1-Tra1-TCH01A010088.5

Sequence:


               
               ACATTCCTGCCCCGCCGGCCCCAGCTCGCCGCTCTCGGCGCCGGCCCTCCGCTGCCCCGC
GATGAAGGCGGCCCGGGCCGAGCGCGAGGAGGTCAAGGTGGTCCTGGTGGGCGACGGCGG
CTGCGGGAAGACGTCGCTGCTGATGGTCTTCGCCGAAGGCGCCTTCCCCGAGAGCTACAC
CCCGACGGTGTTCGAGCGGCTGGGCGTGAATCTGCAGATGAAGGGCGGACCCGTGCACCT
CCAAATCTGGGACACGGCAGGACAAGTCGACTACGACCGCCTGCGGCCTCTGTTCTACCC
TGACGCCAGCGTCCTGCTCCTCTGCTTCGACGTCACCAGCCCACACAGCTTTGACAACAT
CTCTAACCGGTGGTACCCAGAGGTGAATCACTTCTGCAAGGAGGTGCCCATCATCGTCGT
GGGCTGCAAGACCGATCTGCGCAAGGACAAGTCACTGGTGAAGAAGCTGCGGAAAAATGG
GTTGGAACCCGTGACCTACCACAGGGGCCAGGAGATGGCCAGGGCCGTGGGCGCGGTGGC
CTACCTCGAGTGCTCGGCTCTGCTCCAGGAAAACGTCCAGGCCGTCTTCCAGGAGGCGGC
TGAGGTGGCCCTTAGCAGCCGCAGTCGCAACTTCTGGAGGCGGATTACCCGCAGCTTTTG
TGTGCTGACCTGACGGCTTCGCCCTGCCTCCCTCTCCTACCGCCCCAGCCGCACAGGAAG
GAGCTGGCACTGACCTTCCCACTTGGCTGGGCTGGACCCAGTCCCCAGGCTGGGACCACC
GAACTGTACCTCAAACAGATGGGCCCCACCAAGGCTGGGCCTGGGACCCCCGGACTGGAG
GGAAAACCCTCTGATACCGGAGAAAGGGACTCCCAGGCTCACCAGCCCTGTGGGGGTGGA
GGGGTGGCCCGAAGACCCCTGGAACCACTCCCAGCTCCCTGCCCTGGACCACAGGCCCTG
GGGTAGCCTGGCCGCCACCTCGTGGCGATGCCCGGAACTGCCCTTCAGGACCCAGCAGCC
CTAGGTAGGACTCTCCGGCCAGAACTGGCACCCCACCTGGTCCCCCTTCACCCCGCCCAT
CCCAGTGGTAACTGTATCACTAAACTGACATCACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTCCTGCCCCGCCGGCCCCAGCTCGCCGCTCTCGGCGCCGGCCCTCCGCTGCCCCGC
GATGAAGGCGGCCCGGGCCGAGCGCGAGGAGGTCAAGGTGGTCCTGGTGGGCGACGGCGG
CTGCGGGAAGACGTCGCTGCTGATGGTCTTCGCCGAAGGCGCCTTCCCCGAGAGCTACAC
CCCGACGGTGTTCGAGCGGCTGGGCGTGAATCTGCAGATGAAGGGCGGACCCGTGCACCT
CCAAATCTGGGACACGGCAGGACAAGTCGACTACGACCGCCTGCGGCCTCTGTTCTACCC
TGACGCCAGCGTCCTGCTCCTCTGCTTCGACGTCACCAGCCCACACAGCTTTGACAACAT
CTCTAACCGGTGGTACCCAGAGGTGAATCACTTCTGCAAGGAGGTGCCCATCATCGTCGT
GGGCTGCAAGACCGATCTGCGCAAGGACAAGTCACTGGTGAAGAAGCTGCGGAAAAATGG
GTTGGAACCCGTGACCTACCACAGGGGCCAGGAGATGGCCAGGGCCGTGGGCGCGGTGGC
CTACCTCGAGTGCTCGGCTCTGCTCCAGGAAAACGTCCAGGCCGTCTTCCAGGAGGCGGC
TGAGGTGGCCCTTAGCAGCCGCAGTCGCAACTTCTGGAGGCGGATTACCCGCAGCTTTTG
TGTGCTGACCTGACGGCTTCGCCCTGCCTCCCTCTCCTACCGCCCCAGCCGCACAGGAAG
GAGCTGGCACTGACCTTCCCACTTGGCTGGGCTGGACCCAGTCCCCAGGCTGGGACCACC
GAACTGTACCTCAAACAGATGGGCCCCACCAAGGCTGGGCCTGGGACCCCCGGACTGGAG
GGAAAACCCTCTGATACCGGAGAAAGGGACTCCCAGGCTCACCAGCCCTGTGGGGGTGGA
GGGGTGGCCCGAAGACCCCTGGAACCACTCCCAGCTCCCTGCCCTGGACCACAGGCCCTG
GGGTAGCCTGGCCGCCACCTCGTGGCGATGCCCGGAACTGCCCTTCAGGACCCAGCAGCC
CTAGGTAGGACTCTCCGGCCAGAACTGGCACCCCACCTGGTCCCCCTTCACCCCGCCCAT
CCCAGTGGTAACTGTATCACTAAACTGACATCACTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61877773|ref|XP_590532.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61877773|ref|XP_590532.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               95-597, gnl|bosTau2|chr11 (61538116-61538618)
               

               
               95-597, gnl|Hg17|chr2 (20568873-20569375)
               

               
               95-597, gnl|Mm7|chr12 (8525647-8525145)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-597, gnl|bosTau2|chr11 (61538116-61538618)
               

               
               95-597, gnl|Hg17|chr2 (20568873-20569375)
               

               
               95-597, gnl|Mm7|chr12 (8525647-8525145)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cli (0.305623)
               

               
               hlv (0.278513)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               hlv (0.278513)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	95-597, gnl\|bosTau2\|chr11 (61538116-61538618)
	95-597, gnl\|Hg17\|chr2 (20568873-20569375)
	95-597, gnl\|Mm7\|chr12 (8525647-8525145)

	cli (0.305623)
	hlv (0.278513)
	nlu (0.191681)
	duo (0.172801)
	pty (0.142714)
	cov (0.132153)
	jej (0.0989218)
	eje (0.0988338)