Non-Coding RNA Search

Ss1.1-Tra1-TCH01A020030.5

Sequence:


               
               GAAGATTCTTTGGGCTATAAAGATGAAGAGTCTACTTCTTCTGGTGCTGATTTCAGTCTG
CTGGGCTGATCATCTTTCAAACAACTATACTCTAGATCATGACAGAGTTATTCACATCCA
AGCAGAAAATGGCCCCCGTCTACTCGTGGAAGCAGAACAAGCCAAGGTGTTCTCACACCG
AGGTGGCAATGTTACACTGCCGTGTAAATTTTTCCGAGACCCTACAGCATTTGGCTCAGG
AACCCATAAAATCCGAATTAAGTGGACCAAGCTAACTTCAGATTACCTCAAGGAAGTGGA
CGTTTTTGTTTCCATGGGATACCACAAGAAAACCTATGGAGGCTACCACGGTAGAGTGTT
TCTGAAAGGAGGCAGTGATAATGACGCTTCTCTGGTGATCACAGACCTTACCCTGGAGGA
TTATGGGAGATATAAGTGTGAGGTGATTGAAGGATTAGAAGATGATACAGCTGTGGTAGC
ATTAGATTTACAAGGTGTGGTATTCCCCTATTTTCCACGACTGGGGCGCTACAACCTCAA
TTTTCATGAAGCACAGCAGGCTTGTCTGGACCAGGATGCTGTGATTGCCTCCTTCGACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATTCTTTGGGCTATAAAGATGAAGAGTCTACTTCTTCTGGTGCTGATTTCAGTCTG
CTGGGCTGATCATCTTTCAAACAACTATACTCTAGATCATGACAGAGTTATTCACATCCA
AGCAGAAAATGGCCCCCGTCTACTCGTGGAAGCAGAACAAGCCAAGGTGTTCTCACACCG
AGGTGGCAATGTTACACTGCCGTGTAAATTTTTCCGAGACCCTACAGCATTTGGCTCAGG
AACCCATAAAATCCGAATTAAGTGGACCAAGCTAACTTCAGATTACCTCAAGGAAGTGGA
CGTTTTTGTTTCCATGGGATACCACAAGAAAACCTATGGAGGCTACCACGGTAGAGTGTT
TCTGAAAGGAGGCAGTGATAATGACGCTTCTCTGGTGATCACAGACCTTACCCTGGAGGA
TTATGGGAGATATAAGTGTGAGGTGATTGAAGGATTAGAAGATGATACAGCTGTGGTAGC
ATTAGATTTACAAGGTGTGGTATTCCCCTATTTTCCACGACTGGGGCGCTACAACCTCAA
TTTTCATGAAGCACAGCAGGCTTGTCTGGACCAGGATGCTGTGATTGCCTCCTTCGACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|280919|pir||A29165

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|280919|pir||A29165

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               493-600, gnl|bosTau2|chr7 (55937470-55937577)
               

               
               493-600, gnl|canFam2|chr3 (26955255-26954907)
               

               
               493-600, gnl|danRer3|chr5 (52845269-52844932)
               

               
               493-600, gnl|dasNov1|scaffold_29133 (3978-4326)
               

               
               493-600, gnl|echTel1|scaffold_201770 (439-95)
               

               
               493-600, gnl|fr1|chrUn (28440354-28440046)
               

               
               493-600, gnl|galGal2|chrZ (29910261-29910619)
               

               
               493-600, gnl|hg17|chr5 (82975915-82976263)
               

               
               493-600, gnl|Hg17|chr5 (82976242-82976135)
               

               
               493-600, gnl|loxAfr1|scaffold_10875 (51430-51775)
               

               
               493-600, gnl|mm7|chr13 (86679896-86679547)
               

               
               493-600, gnl|Mm7|chr13 (86679567-86679674)
               

               
               493-600, gnl|monDom2|scaffold_20 (19669517-19669167)
               

               
               493-600, gnl|oryCun1|scaffold_87313 (2252-1904)
               

               
               493-600, gnl|panTro1|chr4 (32189349-32189001)
               

               
               493-600, gnl|rheMac2|chr6 (79831847-79832195)
               

               
               493-600, gnl|rn3|chr2 (19554088-19553739)
               

               
               493-600, gnl|tetNig1|chrUn_random (535152-534843)
               

               
               493-600, gnl|xenTro1|scaffold_73 (668082-667742)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               493-600, gnl|bosTau2|chr7 (55937470-55937577)
               

               
               493-600, gnl|canFam2|chr3 (26955255-26954907)
               

               
               493-600, gnl|danRer3|chr5 (52845269-52844932)
               

               
               493-600, gnl|dasNov1|scaffold_29133 (3978-4326)
               

               
               493-600, gnl|echTel1|scaffold_201770 (439-95)
               

               
               493-600, gnl|fr1|chrUn (28440354-28440046)
               

               
               493-600, gnl|galGal2|chrZ (29910261-29910619)
               

               
               493-600, gnl|hg17|chr5 (82975915-82976263)
               

               
               493-600, gnl|Hg17|chr5 (82976242-82976135)
               

               
               493-600, gnl|loxAfr1|scaffold_10875 (51430-51775)
               

               
               493-600, gnl|mm7|chr13 (86679896-86679547)
               

               
               493-600, gnl|Mm7|chr13 (86679567-86679674)
               

               
               493-600, gnl|monDom2|scaffold_20 (19669517-19669167)
               

               
               493-600, gnl|oryCun1|scaffold_87313 (2252-1904)
               

               
               493-600, gnl|panTro1|chr4 (32189349-32189001)
               

               
               493-600, gnl|rheMac2|chr6 (79831847-79832195)
               

               
               493-600, gnl|rn3|chr2 (19554088-19553739)
               

               
               493-600, gnl|tetNig1|chrUn_random (535152-534843)
               

               
               493-600, gnl|xenTro1|scaffold_73 (668082-667742)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.273748)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)

	493-600, gnl\|bosTau2\|chr7 (55937470-55937577)
	493-600, gnl\|canFam2\|chr3 (26955255-26954907)
	493-600, gnl\|danRer3\|chr5 (52845269-52844932)
	493-600, gnl\|dasNov1\|scaffold_29133 (3978-4326)
	493-600, gnl\|echTel1\|scaffold_201770 (439-95)
	493-600, gnl\|fr1\|chrUn (28440354-28440046)
	493-600, gnl\|galGal2\|chrZ (29910261-29910619)
	493-600, gnl\|hg17\|chr5 (82975915-82976263)
	493-600, gnl\|Hg17\|chr5 (82976242-82976135)
	493-600, gnl\|loxAfr1\|scaffold_10875 (51430-51775)
	493-600, gnl\|mm7\|chr13 (86679896-86679547)
	493-600, gnl\|Mm7\|chr13 (86679567-86679674)
	493-600, gnl\|monDom2\|scaffold_20 (19669517-19669167)
	493-600, gnl\|oryCun1\|scaffold_87313 (2252-1904)
	493-600, gnl\|panTro1\|chr4 (32189349-32189001)
	493-600, gnl\|rheMac2\|chr6 (79831847-79832195)
	493-600, gnl\|rn3\|chr2 (19554088-19553739)
	493-600, gnl\|tetNig1\|chrUn_random (535152-534843)
	493-600, gnl\|xenTro1\|scaffold_73 (668082-667742)