Ss1.1-Tra1-TCH01A020037.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGCGCACACACATGGTCGGCTCGCGGCAAAGTTTCGCCTGCGATCACCACTCCGGGAT CCTGCCGCAGTGCTCCGGGCTGTAACCTTGAACTTTCCCAGCGCGGTGACACATTCTCCT CGCTCTCCCTCCCGCCCTCTCTCCTGCGCCCCCCTCCCCGCCTTTTTTAAAAAAGCATTT CACCACCACCTACTACCCCAATCCAACCCACACCGAACCTTCGTGCACCCCCTAGCCCCC AACAACAACAACAACTGCAAAACAGAAAACAAATCCCCAAACCCGGGCGAAAAGCAGCCA ACACCGGCGGCGGCGGCGGCGGCGGCCTCGGCGAGCACGGCCAGCGCGCTCGGACTGCAG GAGGGTTAAAAGTGTAGATTGGATTTCAACCCGGGAAATCTAGCACGCCGAGTGAACTTG AATCTTTGGCTATTTAAGGAGGACTGGGTTTGTTGTGAAGTTGCGGTGATCCAGCGCAGA GCCCGGTCCTGATTGATCGCATCGCGAGGCTCAGATGACTGTAAAATGAATAGATGAAAT TCTTGCTTTTTGAAGATTTTCTTGGGCATCTCCGGGAAAGTGCGTTTTAAGGCGAAGTCA TGATGTATTCTCCCATCTGTCTCACTCAGGATGAATTTCACCCGTTCATCGAGGCACTAC TTCCACATGTCCGTGCAATCGCCTATACTTGGTTCAACCTGCAGGCTCGGAAACGCAAGT ACTTTAAAAAGCACGAGAAGCGAATGTCAAAGGATGAAGAAAGAGCAGTCAAAGATGAGC TTCTCAGCGAAAAGCCTGAAATCAAACAGAAGTGGGCATCCAGGCTCCTGGCCAAACTGC GCAAAGATATCCGCCAGGAGTACCGAGAGGACTTTGTGCTCACCGTGACTGGCAAGAAGC ACCCGTGCTGTGTCTTATCCAATCCCGACCAGAAGGGTAAGATTAGGAGAATCGACTGCC TGCGACAGGCAGACAAAGTCTGGCGTCTGGATCTAGTCATGGTGATCCTGTTCAAAGGCA TCCCCTTGGAAAGTACCGATGGAGAGCGGCTCATGAAATCCCCACATTGCACAAACCCAG CACTTTGTGTCCAGCCACATCATATCACAGTATCAGTTAAGGAGCTTGATTTGTTTTTGG CATACTACGTGCAGGAGCAAGATTCTGGACAATCAGGAAGTCCAAGCCACAATGATCCTG CCAAGAATCCTCCAGGATACCTTGAGGATAGTTTTGTAAAATCTGGAGTCTTCAATGTAT CAGAACTTGTGAGGGTATCCAGAACGCCCATAACCCAGGGAACTGGAGTCAACTTCCCAA TTGGAGAAATCCCGAGCCAACCATACTATCATGACATGAACTCGGGTGTCAATCTTCAGA GGTCGCTGTCTTCTCCACCAAGCAGCAAAAGACCCAAAACTATATCCATAGATGAAAACA TGGAACCAAGTCCTACAGGAGACTTTTATCCCTCTCCGAATTCACCAGCTGCTGGAAGTC GAACATGGCATGAAAGAGATCAAGATATGTCTTCTCCGACTACTATGAAGAAGCCTGAAA AGCCATTGTTCAGCTCTACATCTCCGCAAGATTCTTCCCCAAGATTGAGCACTTTCCCCC AGCACCACCATCCCGGAATACCTGGAGTTGCACACAGTGTCATCTCAACTCGAACTCCAC CTCCACCCTCACCGTTGCCATTTCCAACACAAGCTATTCTTCCTCCAGCCCCATCAAGCT ACTTTTCTCATCCAACAATCAGATATCCTCCCCACCTGAATCCTCAGGATACTCTGAAGA ACTATGTACCTTCTTATGACCCATCCAGTCCGCAAACCAGCCAGTCCTGGTACCTGGGCT AGCTTGGTTCCTTTCCAAGTATCAAATAGGACACCCATCCTACCGGCAAATGTCCAAAAT TACGGTTTGAACATAATTGGAGAACCTTTCCTTCAAGCAGAAACAAGCAACTGAGGGGAA AAATGAGATACACCTCAGGCACATCTCAAGCCAATCGATATGTGGGACTAAGTCCAAGAG ACCCATCCTTCCTACATCAGCAACAGCTGAGGATTTGTGACTGGACCATGAATCAAAACG GCAGGCATTTATACCCCAGTACCAGTGAGGATACATTGGGAATTACTTGGCAAAGTCCTG GTACCTGGGCTAGCTTGGTTCCTTTCCAAGTATCAAATAGGACACCCATCCTACCGGCAA ATGTCCAAAATTACGGTTTGAACATAATTGGAGAACCTTTCCTTCAAGCAGAAACAAGCA ACTGAGGGGAAAAATGAGATACAACAATAGTTTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGCGCACACACATGGTCGGCTCGCGGCAAAGTTTCGCCTGCGATCACCACTCCGGGAT CCTGCCGCAGTGCTCCGGGCTGTAACCTTGAACTTTCCCAGCGCGGTGACACATTCTCCT CGCTCTCCCTCCCGCCCTCTCTCCTGCGCCCCCCTCCCCGCCTTTTTTAAAAAAGCATTT CACCACCACCTACTACCCCAATCCAACCCACACCGAACCTTCGTGCACCCCCTAGCCCCC AACAACAACAACAACTGCAAAACAGAAAACAAATCCCCAAACCCGGGCGAAAAGCAGCCA ACACCGGCGGCGGCGGCGGCGGCGGCCTCGGCGAGCACGGCCAGCGCGCTCGGACTGCAG GAGGGTTAAAAGTGTAGATTGGATTTCAACCCGGGAAATCTAGCACGCCGAGTGAACTTG AATCTTTGGCTATTTAAGGAGGACTGGGTTTGTTGTGAAGTTGCGGTGATCCAGCGCAGA GCCCGGTCCTGATTGATCGCATCGCGAGGCTCAGATGACTGTAAAATGAATAGATGAAAT TCTTGCTTTTTGAAGATTTTCTTGGGCATCTCCGGGAAAGTGCGTTTTAAGGCGAAGTCA TGATGTATTCTCCCATCTGTCTCACTCAGGATGAATTTCACCCGTTCATCGAGGCACTAC TTCCACATGTCCGTGCAATCGCCTATACTTGGTTCAACCTGCAGGCTCGGAAACGCAAGT ACTTTAAAAAGCACGAGAAGCGAATGTCAAAGGATGAAGAAAGAGCAGTCAAAGATGAGC TTCTCAGCGAAAAGCCTGAAATCAAACAGAAGTGGGCATCCAGGCTCCTGGCCAAACTGC GCAAAGATATCCGCCAGGAGTACCGAGAGGACTTTGTGCTCACCGTGACTGGCAAGAAGC ACCCGTGCTGTGTCTTATCCAATCCCGACCAGAAGGGTAAGATTAGGAGAATCGACTGCC TGCGACAGGCAGACAAAGTCTGGCGTCTGGATCTAGTCATGGTGATCCTGTTCAAAGGCA TCCCCTTGGAAAGTACCGATGGAGAGCGGCTCATGAAATCCCCACATTGCACAAACCCAG CACTTTGTGTCCAGCCACATCATATCACAGTATCAGTTAAGGAGCTTGATTTGTTTTTGG CATACTACGTGCAGGAGCAAGATTCTGGACAATCAGGAAGTCCAAGCCACAATGATCCTG CCAAGAATCCTCCAGGATACCTTGAGGATAGTTTTGTAAAATCTGGAGTCTTCAATGTAT CAGAACTTGTGAGGGTATCCAGAACGCCCATAACCCAGGGAACTGGAGTCAACTTCCCAA TTGGAGAAATCCCGAGCCAACCATACTATCATGACATGAACTCGGGTGTCAATCTTCAGA GGTCGCTGTCTTCTCCACCAAGCAGCAAAAGACCCAAAACTATATCCATAGATGAAAACA TGGAACCAAGTCCTACAGGAGACTTTTATCCCTCTCCGAATTCACCAGCTGCTGGAAGTC GAACATGGCATGAAAGAGATCAAGATATGTCTTCTCCGACTACTATGAAGAAGCCTGAAA AGCCATTGTTCAGCTCTACATCTCCGCAAGATTCTTCCCCAAGATTGAGCACTTTCCCCC AGCACCACCATCCCGGAATACCTGGAGTTGCACACAGTGTCATCTCAACTCGAACTCCAC CTCCACCCTCACCGTTGCCATTTCCAACACAAGCTATTCTTCCTCCAGCCCCATCAAGCT ACTTTTCTCATCCAACAATCAGATATCCTCCCCACCTGAATCCTCAGGATACTCTGAAGA ACTATGTACCTTCTTATGACCCATCCAGTCCGCAAACCAGCCAGTCCTGGTACCTGGGCT AGCTTGGTTCCTTTCCAAGTATCAAATAGGACACCCATCCTACCGGCAAATGTCCAAAAT TACGGTTTGAACATAATTGGAGAACCTTTCCTTCAAGCAGAAACAAGCAACTGAGGGGAA AAATGAGATACACCTCAGGCACATCTCAAGCCAATCGATATGTGGGACTAAGTCCAAGAG ACCCATCCTTCCTACATCAGCAACAGCTGAGGATTTGTGACTGGACCATGAATCAAAACG GCAGGCATTTATACCCCAGTACCAGTGAGGATACATTGGGAATTACTTGGCAAAGTCCTG GTACCTGGGCTAGCTTGGTTCCTTTCCAAGTATCAAATAGGACACCCATCCTACCGGCAA ATGTCCAAAATTACGGTTTGAACATAATTGGAGAACCTTTCCTTCAAGCAGAAACAAGCA ACTGAGGGGAAAAATGAGATACAACAATAGTTTAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 627-2316, - strand, RNAz p=0.926729 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 627-2316, - strand, RNAz p=0.926729 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 604-1161, gnl|bosTau2|chr6 (66926049-66925493) | |
| 604-1161, gnl|Hg17|chr9 (14297545-14296988) | |
| 604-1161, gnl|Mm7|chr4 (81902520-81901964) | |
| 627-1159, gnl|bosTau2|chr3 (57384205-57383672) | |
| 627-1159, gnl|canFam2|chr5 (51855224-51854664) | |
| 627-1159, gnl|danRer3|chr22 (13489787-13490324) | |
| 627-1159, gnl|dasNov1|scaffold_18684 (8746-8186) | |
| 627-1159, gnl|echTel1|scaffold_300059 (142787-143347) | |
| 627-1159, gnl|fr1|chrUn (312113243-312113815) | |
| 627-1159, gnl|galGal2|chr8 (27275434-27275986) | |
| 627-1159, gnl|hg17|chr1 (61265840-61266400) | |
| 627-1159, gnl|Hg17|chr1 (61265839-61266372) | |
| 627-1159, gnl|loxAfr1|scaffold_10887 (78601-78038) | |
| 627-1159, gnl|mm7|chr4 (97175687-97176247) | |
| 627-1159, gnl|Mm7|chr4 (97175686-97176219) | |
| 627-1159, gnl|monDom2|scaffold_40 (13705153-13704590) | |
| 627-1159, gnl|oryCun1|scaffold_126140 (3834-3292) | |
| 627-1159, gnl|panTro1|chr1 (59581168-59581728) | |
| 627-1159, gnl|rheMac2|chr1 (63890389-63890949) | |
| 627-1159, gnl|rn3|chr5 (118170467-118171027) | |
| 627-1159, gnl|tetNig1|chr18 (3805581-3805040) | |
| 627-1159, gnl|xenTro1|scaffold_1 (3192418-3191863) | |
| 1403-1524, gnl|bosTau2|chr6 (66671322-66671201) | |
| 1403-1524, gnl|canFam2|chr11 (37662314-37662454) | |
| 1403-1524, gnl|dasNov1|scaffold_525 (38146-38006) | |
| 1403-1524, gnl|galGal2|chrZ_random (1842802-1842662) | |
| 1403-1524, gnl|hg17|chr9 (14136684-14136824) | |
| 1403-1524, gnl|Hg17|chr9 (14136809-14136688) | |
| 1403-1524, gnl|mm7|chr4 (81754111-81754251) | |
| 1403-1524, gnl|Mm7|chr4 (81754236-81754115) | |
| 1403-1524, gnl|monDom2|scaffold_5 (100275217-100275080) | |
| 1403-1524, gnl|oryCun1|scaffold_193659 (45785-45925) | |
| 1403-1524, gnl|panTro1|chr11 (14338756-14338896) | |
| 1403-1524, gnl|rheMac2|chr15 (62787340-62787200) | |
| 1403-1524, gnl|rn3|chr5 (101244591-101244731) | |
| 1403-1524, gnl|tetNig1|chrUn_random (43825763-43825634) | |
| 1403-1524, gnl|xenTro1|scaffold_607 (480403-480544) | |
| 1659-1844, gnl|bosTau2|chr6 (66645823-66645638) | |
| 1659-1844, gnl|canFam2|chr11 (37637588-37637762) | |
| 1659-1844, gnl|dasNov1|scaffold_525 (62844-62670) | |
| 1659-1844, gnl|echTel1|scaffold_321704 (45409-45584) | |
| 1659-1844, gnl|fr1|chrUn (312573795-312573969) | |
| 1659-1844, gnl|galGal2|chrZ_random (1861405-1861241) | |
| 1659-1844, gnl|hg17|chr9 (14110427-14110601) | |
| 1659-1844, gnl|Hg17|chr9 (14110624-14110439) | |
| 1659-1844, gnl|loxAfr1|scaffold_527 (134590-134416) | |
| 1659-1844, gnl|mm7|chr4 (81731443-81731617) | |
| 1659-1844, gnl|Mm7|chr4 (81731640-81731455) | |
| 1659-1844, gnl|monDom2|scaffold_5 (100300602-100300434) | |
| 1659-1844, gnl|oryCun1|scaffold_193659 (15736-15882) | |
| 1659-1844, gnl|panTro1|chr11 (14312383-14312557) | |
| 1659-1844, gnl|rheMac2|chr15 (62813411-62813237) | |
| 1659-1844, gnl|rn3|chr5 (101222758-101222940) | |
| 1659-1844, gnl|tetNig1|chrUn_random (43826743-43826576) | |
| 1659-1844, gnl|xenTro1|scaffold_607 (461171-461336) | |
| 2154-2316, gnl|bosTau2|chr6 (66614547-66614384) | |
| 2154-2316, gnl|Hg17|chr9 (14078327-14078167) | |
| 2154-2316, gnl|Mm7|chr4 (81700539-81700380) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 604-1161, gnl|bosTau2|chr6 (66926049-66925493) | |
| 604-1161, gnl|Hg17|chr9 (14297545-14296988) | |
| 604-1161, gnl|Mm7|chr4 (81902520-81901964) | |
| 627-1159, gnl|bosTau2|chr3 (57384205-57383672) | |
| 627-1159, gnl|canFam2|chr5 (51855224-51854664) | |
| 627-1159, gnl|danRer3|chr22 (13489787-13490324) | |
| 627-1159, gnl|dasNov1|scaffold_18684 (8746-8186) | |
| 627-1159, gnl|echTel1|scaffold_300059 (142787-143347) | |
| 627-1159, gnl|fr1|chrUn (312113243-312113815) | |
| 627-1159, gnl|galGal2|chr8 (27275434-27275986) | |
| 627-1159, gnl|hg17|chr1 (61265840-61266400) | |
| 627-1159, gnl|Hg17|chr1 (61265839-61266372) | |
| 627-1159, gnl|loxAfr1|scaffold_10887 (78601-78038) | |
| 627-1159, gnl|mm7|chr4 (97175687-97176247) | |
| 627-1159, gnl|Mm7|chr4 (97175686-97176219) | |
| 627-1159, gnl|monDom2|scaffold_40 (13705153-13704590) | |
| 627-1159, gnl|oryCun1|scaffold_126140 (3834-3292) | |
| 627-1159, gnl|panTro1|chr1 (59581168-59581728) | |
| 627-1159, gnl|rheMac2|chr1 (63890389-63890949) | |
| 627-1159, gnl|rn3|chr5 (118170467-118171027) | |
| 627-1159, gnl|tetNig1|chr18 (3805581-3805040) | |
| 627-1159, gnl|xenTro1|scaffold_1 (3192418-3191863) | |
| 1403-1524, gnl|bosTau2|chr6 (66671322-66671201) | |
| 1403-1524, gnl|canFam2|chr11 (37662314-37662454) | |
| 1403-1524, gnl|dasNov1|scaffold_525 (38146-38006) | |
| 1403-1524, gnl|galGal2|chrZ_random (1842802-1842662) | |
| 1403-1524, gnl|hg17|chr9 (14136684-14136824) | |
| 1403-1524, gnl|Hg17|chr9 (14136809-14136688) | |
| 1403-1524, gnl|mm7|chr4 (81754111-81754251) | |
| 1403-1524, gnl|Mm7|chr4 (81754236-81754115) | |
| 1403-1524, gnl|monDom2|scaffold_5 (100275217-100275080) | |
| 1403-1524, gnl|oryCun1|scaffold_193659 (45785-45925) | |
| 1403-1524, gnl|panTro1|chr11 (14338756-14338896) | |
| 1403-1524, gnl|rheMac2|chr15 (62787340-62787200) | |
| 1403-1524, gnl|rn3|chr5 (101244591-101244731) | |
| 1403-1524, gnl|tetNig1|chrUn_random (43825763-43825634) | |
| 1403-1524, gnl|xenTro1|scaffold_607 (480403-480544) | |
| 1659-1844, gnl|bosTau2|chr6 (66645823-66645638) | |
| 1659-1844, gnl|canFam2|chr11 (37637588-37637762) | |
| 1659-1844, gnl|dasNov1|scaffold_525 (62844-62670) | |
| 1659-1844, gnl|echTel1|scaffold_321704 (45409-45584) | |
| 1659-1844, gnl|fr1|chrUn (312573795-312573969) | |
| 1659-1844, gnl|galGal2|chrZ_random (1861405-1861241) | |
| 1659-1844, gnl|hg17|chr9 (14110427-14110601) | |
| 1659-1844, gnl|Hg17|chr9 (14110624-14110439) | |
| 1659-1844, gnl|loxAfr1|scaffold_527 (134590-134416) | |
| 1659-1844, gnl|mm7|chr4 (81731443-81731617) | |
| 1659-1844, gnl|Mm7|chr4 (81731640-81731455) | |
| 1659-1844, gnl|monDom2|scaffold_5 (100300602-100300434) | |
| 1659-1844, gnl|oryCun1|scaffold_193659 (15736-15882) | |
| 1659-1844, gnl|panTro1|chr11 (14312383-14312557) | |
| 1659-1844, gnl|rheMac2|chr15 (62813411-62813237) | |
| 1659-1844, gnl|rn3|chr5 (101222758-101222940) | |
| 1659-1844, gnl|tetNig1|chrUn_random (43826743-43826576) | |
| 1659-1844, gnl|xenTro1|scaffold_607 (461171-461336) | |
| 2154-2316, gnl|bosTau2|chr6 (66614547-66614384) | |
| 2154-2316, gnl|Hg17|chr9 (14078327-14078167) | |
| 2154-2316, gnl|Mm7|chr4 (81700539-81700380) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| eep (0.245128) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| nep (0.183925) | |
| gul (0.177588) | |
| isp (0.150376) | |
| fat (0.147427) | |
| cbr (0.127975) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| nep (0.183925) | |
| gul (0.177588) | |
| isp (0.150376) | |
| fat (0.147427) | |
| cbr (0.127975) | |
| jca (0.11396) |