Ss1.1-Tra1-TCH01A020049.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGAGCGCTAAGCTGGGCGGACGTGGGGTCCTTCTCTGCCCCAGCGTAGCAAAGCCTA CCAATGCTTTCTCGTTTGGACCCCGACTCCAATTTGGGAGCTTGGTAGCTGTATCCCCTA GGAAGAGAACCAAAGCAGTAAGAAGAAAGCATTTGAATTTGGAACACTTCTTTGCAGCTG GAAATGGGGAATGGACTGTCAGACCAGACTTCTATCCTGTCCAGCCTGCCTTCCTTTCAG TCCTTCCACATCGTCATTCTGGGTTTGGACTGTGCTGGAAAGACAACTGTATTGTACAGG CTTCAATTCAATGAGTTTGTAAATACTGTACCTACCAAAGGATTTAACACTGAAAAAATT AAGGTAACTTTGGGAAATTCTAAAACAGTCACTTTTCACTTCTGGGATGTAGGTGGTCAG GAGAAATTAAGGCCACTGTGGAAATCATACACCAGATGCACAGATGGCATTGTGTTTGTT GTGGACTCTGTTGATGTTGAAAGGATGGAAGAAGCCAAAACTGAACTTCATAAAATAACT AGGATATCAGAAAATCAAGGAGTCCCTGTGCTTATAGTAGCTAACAAGCAAGACCTGAGG AACTCATTGTCTCTCTCAGAAATTGAAAAATTATTAGCAATGGGTGAACTAAGCTCCTCA ACTCCCTGGCATTTGCAGCCCACCTGTGCAATCATAGGCGATGGACTAAAGGAAGGACTT GAGAAACTACACGATATGATAATTAAAAGAAGAAAAATGTTGCGGCAACAGAAAAAGAAG AGATGAACCACGATACCTTTTCTATTTGTGTGGAGTAGGTTTTCTCCTTCTGATTTTGAC AAATGGAAGAGTGTCTACAGCCTGGTTTGCCTGCCTGCCCTCCTGGATGCTGTTAAAGCT TTGTTTTGTTGAACAATCAGATGTCCAAATCTACTGCCTTGTGGAAGATGAGTAAATGCA GTGCTTCTTCAAATGGTCTCTTCTCCCTACCCCACAAGTCTTTTGGTACTACCATTTTGG GAAGCCAAGCAAGGATAGGAAATTGACCAGAAAACAGTTGTGGAAATTTGACCTGAAGTT AGTGAAATAAAACTTTGGAGAGTGAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGAGCGCTAAGCTGGGCGGACGTGGGGTCCTTCTCTGCCCCAGCGTAGCAAAGCCTA CCAATGCTTTCTCGTTTGGACCCCGACTCCAATTTGGGAGCTTGGTAGCTGTATCCCCTA GGAAGAGAACCAAAGCAGTAAGAAGAAAGCATTTGAATTTGGAACACTTCTTTGCAGCTG GAAATGGGGAATGGACTGTCAGACCAGACTTCTATCCTGTCCAGCCTGCCTTCCTTTCAG TCCTTCCACATCGTCATTCTGGGTTTGGACTGTGCTGGAAAGACAACTGTATTGTACAGG CTTCAATTCAATGAGTTTGTAAATACTGTACCTACCAAAGGATTTAACACTGAAAAAATT AAGGTAACTTTGGGAAATTCTAAAACAGTCACTTTTCACTTCTGGGATGTAGGTGGTCAG GAGAAATTAAGGCCACTGTGGAAATCATACACCAGATGCACAGATGGCATTGTGTTTGTT GTGGACTCTGTTGATGTTGAAAGGATGGAAGAAGCCAAAACTGAACTTCATAAAATAACT AGGATATCAGAAAATCAAGGAGTCCCTGTGCTTATAGTAGCTAACAAGCAAGACCTGAGG AACTCATTGTCTCTCTCAGAAATTGAAAAATTATTAGCAATGGGTGAACTAAGCTCCTCA ACTCCCTGGCATTTGCAGCCCACCTGTGCAATCATAGGCGATGGACTAAAGGAAGGACTT GAGAAACTACACGATATGATAATTAAAAGAAGAAAAATGTTGCGGCAACAGAAAAAGAAG AGATGAACCACGATACCTTTTCTATTTGTGTGGAGTAGGTTTTCTCCTTCTGATTTTGAC AAATGGAAGAGTGTCTACAGCCTGGTTTGCCTGCCTGCCCTCCTGGATGCTGTTAAAGCT TTGTTTTGTTGAACAATCAGATGTCCAAATCTACTGCCTTGTGGAAGATGAGTAAATGCA GTGCTTCTTCAAATGGTCTCTTCTCCCTACCCCACAAGTCTTTTGGTACTACCATTTTGG GAAGCCAAGCAAGGATAGGAAATTGACCAGAAAACAGTTGTGGAAATTTGACCTGAAGTT AGTGAAATAAAACTTTGGAGAGTGAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 457-593, + strand, RNAz p=0.593867 | |
| 480-593, - strand, RNAz p=0.5121 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 457-593, + strand, RNAz p=0.593867 | |
| 480-593, - strand, RNAz p=0.5121 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 103-1104, gnl|bosTau2|chr4 (5931228-5932235) | |
| 103-1104, gnl|Hg17|chr7 (12501036-12502041) | |
| 103-1104, gnl|Mm7|chr12 (37870159-37869154) | |
| 220-593, gnl|bosTau2|chr19 (42448267-42448640) | |
| 220-593, gnl|canFam2|chr9 (23151599-23151236) | |
| 220-593, gnl|danRer3|chr12 (26650294-26650654) | |
| 220-593, gnl|dasNov1|scaffold_108321 (5123-5483) | |
| 220-593, gnl|echTel1|scaffold_100838 (6940-7313) | |
| 220-593, gnl|fr1|chrUn (244909768-244909402) | |
| 220-593, gnl|galGal2|chr7 (5624689-5624331) | |
| 220-593, gnl|hg17|chr17 (38832657-38833020) | |
| 220-593, gnl|Hg17|chr17 (38832666-38833039) | |
| 220-593, gnl|loxAfr1|scaffold_149603 (4288-4648) | |
| 220-593, gnl|mm7|chr11 (101775719-101776082) | |
| 220-593, gnl|Mm7|chr11 (101775725-101776101) | |
| 220-593, gnl|monDom2|scaffold_18 (53781382-53781745) | |
| 220-593, gnl|oryCun1|scaffold_146528 (9752-9392) | |
| 220-593, gnl|panTro1|chr19 (41916464-41916827) | |
| 220-593, gnl|rheMac2|chr16 (53413281-53413644) | |
| 220-593, gnl|rn3|chr10 (90715824-90716187) | |
| 220-593, gnl|tetNig1|chr2 (1114177-1114540) | |
| 220-593, gnl|xenTro1|scaffold_49 (1504611-1504248) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-1104, gnl|bosTau2|chr4 (5931228-5932235) | |
| 103-1104, gnl|Hg17|chr7 (12501036-12502041) | |
| 103-1104, gnl|Mm7|chr12 (37870159-37869154) | |
| 220-593, gnl|bosTau2|chr19 (42448267-42448640) | |
| 220-593, gnl|canFam2|chr9 (23151599-23151236) | |
| 220-593, gnl|danRer3|chr12 (26650294-26650654) | |
| 220-593, gnl|dasNov1|scaffold_108321 (5123-5483) | |
| 220-593, gnl|echTel1|scaffold_100838 (6940-7313) | |
| 220-593, gnl|fr1|chrUn (244909768-244909402) | |
| 220-593, gnl|galGal2|chr7 (5624689-5624331) | |
| 220-593, gnl|hg17|chr17 (38832657-38833020) | |
| 220-593, gnl|Hg17|chr17 (38832666-38833039) | |
| 220-593, gnl|loxAfr1|scaffold_149603 (4288-4648) | |
| 220-593, gnl|mm7|chr11 (101775719-101776082) | |
| 220-593, gnl|Mm7|chr11 (101775725-101776101) | |
| 220-593, gnl|monDom2|scaffold_18 (53781382-53781745) | |
| 220-593, gnl|oryCun1|scaffold_146528 (9752-9392) | |
| 220-593, gnl|panTro1|chr19 (41916464-41916827) | |
| 220-593, gnl|rheMac2|chr16 (53413281-53413644) | |
| 220-593, gnl|rn3|chr10 (90715824-90716187) | |
| 220-593, gnl|tetNig1|chr2 (1114177-1114540) | |
| 220-593, gnl|xenTro1|scaffold_49 (1504611-1504248) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ski (0.440205) | |
| eje (0.395335) | |
| elu (0.385356) | |
| spl (0.286369) | |
| sug (0.254582) | |
| tra (0.246184) | |
| jej (0.197844) | |
| sin (0.174948) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.440205) | |
| eje (0.395335) | |
| elu (0.385356) | |
| spl (0.286369) | |
| sug (0.254582) | |
| tra (0.246184) | |
| jej (0.197844) | |
| sin (0.174948) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) |