Ss1.1-Tra1-TCH01A030005.5
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AGTGCGGGGGCGGGGCCGGCCGTCAGCTGACTGTGGCGGCGGCGGCGGCGTCGCGGGACC
ACCGTCGGATCGCGGCTCTGCGCGGAGGGTCGCCCGCGCGTCAGCTCTCGGGAGGCGAGG
CGCGGGGCCGGCCACACCATGGCGACCACCGTCAGCACGCAGCGCGGCCCGGTGTACCTC
GGGGAGCTCCCGCAGGACTTTCTGCGCATCACGCCCACGCAACAGCAACAGCAGATCCAG
CTGGACGCGCAGGCGGCACAGCAGCTGCAGTTCGGGGGGACGCTGGGCACCGTGGGCCGT
CTCAGCATCACCGTGGTGCAGGCCAAGTTGGCGAAGAACTACGGCGTGACCCGCATGGAC
CCGTACTGCCGACTGCGCCTGGGCTACGCCGTGTACGAGACGCCCACGGCCCACAACGGC
GCCAAGAACCCGCGCTGGAATAAGGTGATCCAGTGCACGGTGCCGCCCGGCGTGGACTCC
TTCTACCTGGAGATCTTTGATGAGCGCGCCTTCTCCATGGACGACCGCATCGCCTGGACG
CATGTCACCATCCCCGAGTCGCTGAAGCAGGGCAAGGTGGAGGACGAGTGGTACAGCCTG
AGCGGGCGGCAGGGCGACGACAAGGAGGGCATGGTCAACCTGGTCATGTCCTACACGTCG
CTGCCGGCCGCCGTGGTGATGCCGCCTCAGCCTGTGGTCCTGATGCCCACAGTGTACCAG
CAGGGGGTCGGCTACGTGCCCCTCGCAGGGGTGCCCGCCGTGTGCGGCCCCGGCGTGGTG
CCCGTGGCCCTGCCCCCGGCCGTCAGCGCGCAGCCCCGCTGCAGCGAAGAGGACCTGAAG
GCCATGCAGGACATGTTCCCCAACGTGGACCGCGAGGTGATCCGCTCCGTGCTGGAGGCC
CAGCGGGGGAGCAAGGACGCCGCCATCAACTCCCTGCTCCAGATGGGCGAGGAGTCCTAG
GCACGCCTGGCGCCCTGTTGCCTCCGGCCTGGCCGCTGGCCACCCTCCCCGGGAGCCCCG
TCCCAGCAGATGCCCGTGAACGCGCCCCCGCCCCTCGGCCGTCTGTGTAGCCCCCAGTGC
ACACCCTTGCTCGGGATGCATGTGGTTTTGGTCCCTGCAGCCGCGCTCGATGTGGTCGGG
GCGGTGGGGTCCTTTCTTCCTCCCGCTCCCGTCAGAGAAGAGCCGCACGCGGCTGTGTCC
TGTGTGCACACGCCCACCGTCCCACCGCCCAGGGCGCACGTCCCCTCCTCGCTGTCCCCA
GAGGGTCCCAGGGCGCTCGTGCTGAGCCTCCAGGTCTTACTGCGGGCTGCAGGGGCGCCC
TTTGGGGTAACCCGTAACTCCAGGCGCCTAGAACCCAGGAGCAGCTGGTTTGGGTTCCTT
TAGGACGCCCACACTGAAAACCCACCTCCTGCCCCACGTGGGCTCTGCGGGCCGCTCGCC
AGTGTCCCGGGCCAGCCTCGGCCCGCGGGCTGGCACGCGTGCACGCGGGCCGGGTCTGGG
GCCGGGTCTGGGGCCCTGTCTGTGCTCAGCCCCTGGGCCCCTGCGTCTGTCCTGCTGTCT
CGCCGGCTCCGCGCCATGCTGTTCGAGGGGCCCTCCCTGTGACTGGGGCGTCTTTGTATT
GGTTTATTAAAGGGTCTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTGCGGGGGCGGGGCCGGCCGTCAGCTGACTGTGGCGGCGGCGGCGGCGTCGCGGGACC
ACCGTCGGATCGCGGCTCTGCGCGGAGGGTCGCCCGCGCGTCAGCTCTCGGGAGGCGAGG
CGCGGGGCCGGCCACACCATGGCGACCACCGTCAGCACGCAGCGCGGCCCGGTGTACCTC
GGGGAGCTCCCGCAGGACTTTCTGCGCATCACGCCCACGCAACAGCAACAGCAGATCCAG
CTGGACGCGCAGGCGGCACAGCAGCTGCAGTTCGGGGGGACGCTGGGCACCGTGGGCCGT
CTCAGCATCACCGTGGTGCAGGCCAAGTTGGCGAAGAACTACGGCGTGACCCGCATGGAC
CCGTACTGCCGACTGCGCCTGGGCTACGCCGTGTACGAGACGCCCACGGCCCACAACGGC
GCCAAGAACCCGCGCTGGAATAAGGTGATCCAGTGCACGGTGCCGCCCGGCGTGGACTCC
TTCTACCTGGAGATCTTTGATGAGCGCGCCTTCTCCATGGACGACCGCATCGCCTGGACG
CATGTCACCATCCCCGAGTCGCTGAAGCAGGGCAAGGTGGAGGACGAGTGGTACAGCCTG
AGCGGGCGGCAGGGCGACGACAAGGAGGGCATGGTCAACCTGGTCATGTCCTACACGTCG
CTGCCGGCCGCCGTGGTGATGCCGCCTCAGCCTGTGGTCCTGATGCCCACAGTGTACCAG
CAGGGGGTCGGCTACGTGCCCCTCGCAGGGGTGCCCGCCGTGTGCGGCCCCGGCGTGGTG
CCCGTGGCCCTGCCCCCGGCCGTCAGCGCGCAGCCCCGCTGCAGCGAAGAGGACCTGAAG
GCCATGCAGGACATGTTCCCCAACGTGGACCGCGAGGTGATCCGCTCCGTGCTGGAGGCC
CAGCGGGGGAGCAAGGACGCCGCCATCAACTCCCTGCTCCAGATGGGCGAGGAGTCCTAG
GCACGCCTGGCGCCCTGTTGCCTCCGGCCTGGCCGCTGGCCACCCTCCCCGGGAGCCCCG
TCCCAGCAGATGCCCGTGAACGCGCCCCCGCCCCTCGGCCGTCTGTGTAGCCCCCAGTGC
ACACCCTTGCTCGGGATGCATGTGGTTTTGGTCCCTGCAGCCGCGCTCGATGTGGTCGGG
GCGGTGGGGTCCTTTCTTCCTCCCGCTCCCGTCAGAGAAGAGCCGCACGCGGCTGTGTCC
TGTGTGCACACGCCCACCGTCCCACCGCCCAGGGCGCACGTCCCCTCCTCGCTGTCCCCA
GAGGGTCCCAGGGCGCTCGTGCTGAGCCTCCAGGTCTTACTGCGGGCTGCAGGGGCGCCC
TTTGGGGTAACCCGTAACTCCAGGCGCCTAGAACCCAGGAGCAGCTGGTTTGGGTTCCTT
TAGGACGCCCACACTGAAAACCCACCTCCTGCCCCACGTGGGCTCTGCGGGCCGCTCGCC
AGTGTCCCGGGCCAGCCTCGGCCCGCGGGCTGGCACGCGTGCACGCGGGCCGGGTCTGGG
GCCGGGTCTGGGGCCCTGTCTGTGCTCAGCCCCTGGGCCCCTGCGTCTGTCCTGCTGTCT
CGCCGGCTCCGCGCCATGCTGTTCGAGGGGCCCTCCCTGTGACTGGGGCGTCTTTGTATT
GGTTTATTAAAGGGTCTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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314-504, gnl|bosTau2|chr29 (44525935-44525745) |
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314-504, gnl|canFam2|chr18 (48594427-48594665) |
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314-504, gnl|danRer3|chr2 (41112092-41111901) |
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314-504, gnl|echTel1|scaffold_215988 (7145-7366) |
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314-504, gnl|galGal2|chr5 (12216014-12215809) |
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314-504, gnl|hg17|chr11 (1268021-1268262) |
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314-504, gnl|Hg17|chr11 (1268223-1268033) |
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314-504, gnl|loxAfr1|scaffold_33332 (7763-7993) |
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314-504, gnl|mm7|chr7 (138319254-138319490) |
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314-504, gnl|Mm7|chr7 (138319454-138319264) |
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314-504, gnl|monDom2|scaffold_265 (255739-255970) |
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314-504, gnl|panTro1|chr9 (1408083-1408324) |
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314-504, gnl|rheMac2|chr14 (1109316-1109075) |
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314-504, gnl|rn3|chr1 (202179308-202179547) |
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314-504, gnl|tetNig1|chrUn_random (32556265-32556045) |
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314-504, gnl|xenTro1|scaffold_389 (345647-345863) |
| |
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657-759, gnl|bosTau2|chr29 (44524340-44524238) |
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657-759, gnl|Hg17|chr11 (1263899-1263797) |
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657-759, gnl|Mm7|chr7 (138316878-138316775) |
| |
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874-1590, gnl|bosTau2|chr29 (44522091-44521394) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
314-504, gnl|bosTau2|chr29 (44525935-44525745) |
|
314-504, gnl|canFam2|chr18 (48594427-48594665) |
|
314-504, gnl|danRer3|chr2 (41112092-41111901) |
|
314-504, gnl|echTel1|scaffold_215988 (7145-7366) |
|
314-504, gnl|galGal2|chr5 (12216014-12215809) |
|
314-504, gnl|hg17|chr11 (1268021-1268262) |
|
314-504, gnl|Hg17|chr11 (1268223-1268033) |
|
314-504, gnl|loxAfr1|scaffold_33332 (7763-7993) |
|
314-504, gnl|mm7|chr7 (138319254-138319490) |
|
314-504, gnl|Mm7|chr7 (138319454-138319264) |
|
314-504, gnl|monDom2|scaffold_265 (255739-255970) |
|
314-504, gnl|panTro1|chr9 (1408083-1408324) |
|
314-504, gnl|rheMac2|chr14 (1109316-1109075) |
|
314-504, gnl|rn3|chr1 (202179308-202179547) |
|
314-504, gnl|tetNig1|chrUn_random (32556265-32556045) |
|
314-504, gnl|xenTro1|scaffold_389 (345647-345863) |
| |
|
657-759, gnl|bosTau2|chr29 (44524340-44524238) |
|
657-759, gnl|Hg17|chr11 (1263899-1263797) |
|
657-759, gnl|Mm7|chr7 (138316878-138316775) |
| |
|
874-1590, gnl|bosTau2|chr29 (44522091-44521394) |
|
hyp (0.571347) |
|
fce (0.543183) |
|
csp (0.322373) |
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jej (0.296765) |
|
cga (0.279096) |
|
ece (0.229305) |
|
col (0.195008) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
cli (0.152812) |
|
cag (0.151194) |
|
pty (0.142714) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
hyp (0.571347) |
|
fce (0.543183) |
|
csp (0.322373) |
|
jej (0.296765) |
|
cga (0.279096) |
|
ece (0.229305) |
|
col (0.195008) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
cli (0.152812) |
|
cag (0.151194) |
|
pty (0.142714) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
nbm (0.0993246) |
