Non-Coding RNA Search

Ss1.1-Tra1-TCH01A030020.5

Sequence:


               
               GAGCTGGTCCTCCGAGCAAAGAAAGACAACTTAGCAAAACAACAGCAGCAGCAACAGAAC
GATGTGGTGAAGCTCACAAAGAACAGTAAACGAAAGAAACGCTGCTGCTAATGCCCCCAG
CCCACTGCAGAGACTGCACTGCGGCCACTCCCCCGGCCCCAGGCCGCGGGGCTCCTCTCC
TGGGGGACAGTCTCAGTTTTGTGCCGTTATTTAAAGAATTCTCTCCACGTTTTGTACCGG
GAGGCGCCATTGGCACTTCCTCCCCTCCCCCTTCGAGTGCCAAGAAGGTGGACAGCCTGC
CCTTCCCTTCTGGTGCCCCTGCCCCCCGGCCGAGGTGCCTGGGCCCAGCGAGGACGCTGC
CAGCCGAGCGGACTGATTAACCGGAGTTTGTACATAATGTATATTGCTTTAACCAGTGTA
TCACCCTCGTCCTGCTCTGGCTTTTGCCTCCTCCTTAATGCCAGCCTGCTGCGACACCCC
TCCCCACCCCATCTTACCGCCAGCAGCTTCCTGAGGAGACAGGATCGCATTCTTGATGCA
CCTTTTGCCAACTTGGGCTGGTGGAGTGGGCTCCGTGTGACTCGTTCTCTCTGCAGGCTG
TCGGCATCTGTCCCTGGCATGTAGGGGCTCACCCCTGGCTGGGTCCTGTGCCATCCCAGC
TCCCTCCCCTCCCCTCCCCATCACCATTCTGGCAGCTGGGGAAACCTGGCCTTGAGGTGG
GCCAGGGGGTTCCCATCAGGAGTCACTCCTGCCTGCTGGCCCACAGACTTCTTGCCCTGC
CTTTTAAACGCCTCTGAGCTACAAACCCAGGGAGCCACGGCTTCTAACTTATATACCAAC
CTGTTTCAGTTCCAGCAGAAAGGCAGAGGTGTGTTTGTGCAGGGATGGTCTTGCAGCGGG
GCTAAGGAGCATTATTTTATCAGATAAAGAAAAAAATGAAGCCAAATCAAATGAATTAAG
TTCCTCATACTTTTTTTTTTTCTTCCTGAGGTTTGGTTGGCACAGCAAGCAGAAAGTTGT
GGCCTCCCCACTTTGGGTCCAGTGTTTTTAGAAAAAGTGAATGGCTGCCGGTCGTTGTGG
ACCTGGGCTCTTGGCCAAGCAGCTCTGCCTTCCTGGACGTTAAGGAGGGGCCTCCCACTG
AGTCCTGGTCTCCAGTGCAGCACCAGGCACCTTTGAGTGTGGAGAGTGAGTGCCAGGGGC
TGCTGGGCCCTGGGGACGATGTCTCTGAGGTGGACACAGGCAGCCTTGGATCACTGACTG
GACTGTTTTAGTAGAAAGGCAGCAGGAGGACTTCTTAGCTGGTGGGAAGGAATGGCCGCC
AGGGCTGGGAGCCAGCTTTGACCCACCCTGGTGCCCTGGAGGAAAAACCAGGGTCATCTT
GACTGTCACCTTCACCCCCTCAGGACCACACTTCATTCACCTTTCCCCTAAAAGGATCAC
GTAACTTGGGAATAATTTATTCCAACACCATGATGTGTTTTACTAGATTTCCTTTCTTAT
TCAATTTCCAGGCTGAGCCCTGACTGGACAATCACATCACGGATCTCACTGTAGATTTTC
CATGTCATTGTTGATGGGTTTTTAATCAATAAAAACTAGGGGTTTCTTCTCACCTGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGGTCCTCCGAGCAAAGAAAGACAACTTAGCAAAACAACAGCAGCAGCAACAGAAC
GATGTGGTGAAGCTCACAAAGAACAGTAAACGAAAGAAACGCTGCTGCTAATGCCCCCAG
CCCACTGCAGAGACTGCACTGCGGCCACTCCCCCGGCCCCAGGCCGCGGGGCTCCTCTCC
TGGGGGACAGTCTCAGTTTTGTGCCGTTATTTAAAGAATTCTCTCCACGTTTTGTACCGG
GAGGCGCCATTGGCACTTCCTCCCCTCCCCCTTCGAGTGCCAAGAAGGTGGACAGCCTGC
CCTTCCCTTCTGGTGCCCCTGCCCCCCGGCCGAGGTGCCTGGGCCCAGCGAGGACGCTGC
CAGCCGAGCGGACTGATTAACCGGAGTTTGTACATAATGTATATTGCTTTAACCAGTGTA
TCACCCTCGTCCTGCTCTGGCTTTTGCCTCCTCCTTAATGCCAGCCTGCTGCGACACCCC
TCCCCACCCCATCTTACCGCCAGCAGCTTCCTGAGGAGACAGGATCGCATTCTTGATGCA
CCTTTTGCCAACTTGGGCTGGTGGAGTGGGCTCCGTGTGACTCGTTCTCTCTGCAGGCTG
TCGGCATCTGTCCCTGGCATGTAGGGGCTCACCCCTGGCTGGGTCCTGTGCCATCCCAGC
TCCCTCCCCTCCCCTCCCCATCACCATTCTGGCAGCTGGGGAAACCTGGCCTTGAGGTGG
GCCAGGGGGTTCCCATCAGGAGTCACTCCTGCCTGCTGGCCCACAGACTTCTTGCCCTGC
CTTTTAAACGCCTCTGAGCTACAAACCCAGGGAGCCACGGCTTCTAACTTATATACCAAC
CTGTTTCAGTTCCAGCAGAAAGGCAGAGGTGTGTTTGTGCAGGGATGGTCTTGCAGCGGG
GCTAAGGAGCATTATTTTATCAGATAAAGAAAAAAATGAAGCCAAATCAAATGAATTAAG
TTCCTCATACTTTTTTTTTTTCTTCCTGAGGTTTGGTTGGCACAGCAAGCAGAAAGTTGT
GGCCTCCCCACTTTGGGTCCAGTGTTTTTAGAAAAAGTGAATGGCTGCCGGTCGTTGTGG
ACCTGGGCTCTTGGCCAAGCAGCTCTGCCTTCCTGGACGTTAAGGAGGGGCCTCCCACTG
AGTCCTGGTCTCCAGTGCAGCACCAGGCACCTTTGAGTGTGGAGAGTGAGTGCCAGGGGC
TGCTGGGCCCTGGGGACGATGTCTCTGAGGTGGACACAGGCAGCCTTGGATCACTGACTG
GACTGTTTTAGTAGAAAGGCAGCAGGAGGACTTCTTAGCTGGTGGGAAGGAATGGCCGCC
AGGGCTGGGAGCCAGCTTTGACCCACCCTGGTGCCCTGGAGGAAAAACCAGGGTCATCTT
GACTGTCACCTTCACCCCCTCAGGACCACACTTCATTCACCTTTCCCCTAAAAGGATCAC
GTAACTTGGGAATAATTTATTCCAACACCATGATGTGTTTTACTAGATTTCCTTTCTTAT
TCAATTTCCAGGCTGAGCCCTGACTGGACAATCACATCACGGATCTCACTGTAGATTTTC
CATGTCATTGTTGATGGGTTTTTAATCAATAAAAACTAGGGGTTTCTTCTCACCTGTCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-157, - strand, RNAz p=0.620165

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, - strand, RNAz p=0.620165

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1619, gnl|bosTau2|chr17 (38543793-38545390)
               

               
               1-1619, gnl|Hg17|chr12 (118997879-118996260)
               

               
               1-1619, gnl|Mm7|chr5 (114867572-114869086)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1619, gnl|bosTau2|chr17 (38543793-38545390)
               

               
               1-1619, gnl|Hg17|chr12 (118997879-118996260)
               

               
               1-1619, gnl|Mm7|chr5 (114867572-114869086)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-1619, gnl\|bosTau2\|chr17 (38543793-38545390)
	1-1619, gnl\|Hg17\|chr12 (118997879-118996260)
	1-1619, gnl\|Mm7\|chr5 (114867572-114869086)

	fty (0.17584)
	pla (0.133672)
	cov (0.132153)
	eru (0.120048)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)