Non-Coding RNA Search

Ss1.1-Tra1-TCH01A030070.5

Sequence:


               
               CCCTCGCCTGGGAGCTGCGAGGCTTCAGTAACCCTGCAGCAGTAGCCACCTCTGTCGCTG
CGGAGCTGCTTGTCTCCGGTTGCTGCTGAGCCGCGTTCGGAGCCCTGCCGAGGAGGCTGC
AGCCGTAGCCAGGAGCCCGCAGCCCGCGCCCGAGCCCGCAGCCGCCGCCGAGGGCGCCCC
AGGCCGCGCCATGGTGAAGGTGACGTTCAACTCGGCTCTGGCCCAGAAGGAGGCCAAGAA
GGACGAGCCCAAGAGCGGAGAGGAGGCGCTCATCATCCCCCCCGACACCATCGCGGTGGA
CTGCAAGGACCCAGATGAAGTGGTACCAGTTGGCCAAAGAAGAGCCTGGTGTTGGTGCAT
GTGCTTTGGCCTGGCATTTATGCTTGCAGGTGTCATTCTAGGAGGAGCATACCTGTACAA
ATATTTTGCACTTCAACCAGATGACGTCTACTATTGTGGAATAAAGTACATCAAGGATGA
TGTCATCTTAAATGAGCCTCCTGCGAACGCCCCTGCCGCCCGCTACCAGACCATCGAGGA
AAATATTAAGATCTTCGAGGAAGATGGGGTCGAGTTCATCAGCGTGCCTGTCCCAGAGTT
TGCGGACAGCGACCCTGCCAACATTGTGCATGACTTTAACAAGAAACTCACGGCTTATTT
AGATCTTAACCTGGATAAGTGCTATGTGATTCCTCTGAACACTTCCATTGTTATGCCACC
CAGAAACCTACTGGAGTTACTTATTAACATAAAGGCTGGGACCTACCTGCCTCAGTCCTA
TTTGATCCATGAACACATGGTCATCACTGATCGCATTGAAAACATCGATCACCTGGGCTT
CTATATTTATCGACTGTGCCATGACAAGGAAACTTACAAACTGCAGCGCAAAGAAACCGT
TAAAGGTATTCAGAAACGTGAAGCCAGCAATTGTGCTACGATTCGGCATTTTGAAAACAA
ATTTGCCGTCGAAACTTTAATTTGTTCTTGAACAGTCAAGAAAAACATTATGGAGAAAAA
CTTAATACACAGCATAATAACCCCACCCTTTGTATTTTGTGCAGTGATTATTTTTTAAAA
TCTTCTTTCATGTAAGTAGCAAACAGGGCTTCACTATCTTTTCATCTCATTGATTCAATT
AAAACCATTACCTTTTAAAAATCTTTTTTCCTTTCCAAGTGTGGTGTCTTTTATCTTGAA
TTAGTAGTTGTATGAAGTCATAGGTAATAGTACACTTCACCATAGACCTTTAGGTGTTAA
GAAGAATTCAGATTTCCTTAATTCATTTATCCAGATTTTTATGTTTTAATTATGCATTTT
CAAGAGGAGGGGTTATCTAATAATCAGATATATGCATACGTAAAAATGGACCACAGTGAC
TTATTTGTAGTTGTTGCCCTGCTACTTGGTTAGAGCATTTGAACACACATTTTGATTTTC
CTCTAATTAAAATGTGCAGTATTTTCAGTGTCATATTTAACTATTTAGAGTATAATTTCC
ACCTCGATGTTTTAATATCCTAGGCATCTGCTGTAATGATATTTTAGAAAATGTTTGGAA
TTTAAGAAATAACCTGTATTACCAATTTGTATAATCTATACTGTGCAACAGAATATAAAT
ATCACAAAGTTGTTTGACTAAAGGACTGTGTGTTGTTTTTCCCGTATAATAAAGCCAAAG
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCGCCTGGGAGCTGCGAGGCTTCAGTAACCCTGCAGCAGTAGCCACCTCTGTCGCTG
CGGAGCTGCTTGTCTCCGGTTGCTGCTGAGCCGCGTTCGGAGCCCTGCCGAGGAGGCTGC
AGCCGTAGCCAGGAGCCCGCAGCCCGCGCCCGAGCCCGCAGCCGCCGCCGAGGGCGCCCC
AGGCCGCGCCATGGTGAAGGTGACGTTCAACTCGGCTCTGGCCCAGAAGGAGGCCAAGAA
GGACGAGCCCAAGAGCGGAGAGGAGGCGCTCATCATCCCCCCCGACACCATCGCGGTGGA
CTGCAAGGACCCAGATGAAGTGGTACCAGTTGGCCAAAGAAGAGCCTGGTGTTGGTGCAT
GTGCTTTGGCCTGGCATTTATGCTTGCAGGTGTCATTCTAGGAGGAGCATACCTGTACAA
ATATTTTGCACTTCAACCAGATGACGTCTACTATTGTGGAATAAAGTACATCAAGGATGA
TGTCATCTTAAATGAGCCTCCTGCGAACGCCCCTGCCGCCCGCTACCAGACCATCGAGGA
AAATATTAAGATCTTCGAGGAAGATGGGGTCGAGTTCATCAGCGTGCCTGTCCCAGAGTT
TGCGGACAGCGACCCTGCCAACATTGTGCATGACTTTAACAAGAAACTCACGGCTTATTT
AGATCTTAACCTGGATAAGTGCTATGTGATTCCTCTGAACACTTCCATTGTTATGCCACC
CAGAAACCTACTGGAGTTACTTATTAACATAAAGGCTGGGACCTACCTGCCTCAGTCCTA
TTTGATCCATGAACACATGGTCATCACTGATCGCATTGAAAACATCGATCACCTGGGCTT
CTATATTTATCGACTGTGCCATGACAAGGAAACTTACAAACTGCAGCGCAAAGAAACCGT
TAAAGGTATTCAGAAACGTGAAGCCAGCAATTGTGCTACGATTCGGCATTTTGAAAACAA
ATTTGCCGTCGAAACTTTAATTTGTTCTTGAACAGTCAAGAAAAACATTATGGAGAAAAA
CTTAATACACAGCATAATAACCCCACCCTTTGTATTTTGTGCAGTGATTATTTTTTAAAA
TCTTCTTTCATGTAAGTAGCAAACAGGGCTTCACTATCTTTTCATCTCATTGATTCAATT
AAAACCATTACCTTTTAAAAATCTTTTTTCCTTTCCAAGTGTGGTGTCTTTTATCTTGAA
TTAGTAGTTGTATGAAGTCATAGGTAATAGTACACTTCACCATAGACCTTTAGGTGTTAA
GAAGAATTCAGATTTCCTTAATTCATTTATCCAGATTTTTATGTTTTAATTATGCATTTT
CAAGAGGAGGGGTTATCTAATAATCAGATATATGCATACGTAAAAATGGACCACAGTGAC
TTATTTGTAGTTGTTGCCCTGCTACTTGGTTAGAGCATTTGAACACACATTTTGATTTTC
CTCTAATTAAAATGTGCAGTATTTTCAGTGTCATATTTAACTATTTAGAGTATAATTTCC
ACCTCGATGTTTTAATATCCTAGGCATCTGCTGTAATGATATTTTAGAAAATGTTTGGAA
TTTAAGAAATAACCTGTATTACCAATTTGTATAATCTATACTGTGCAACAGAATATAAAT
ATCACAAAGTTGTTTGACTAAAGGACTGTGTGTTGTTTTTCCCGTATAATAAAGCCAAAG
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q52N47_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q52N47_PIG

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-314, gnl|bosTau2|chr12 (22161440-22161761)
               

               
               1-314, gnl|Hg17|chr13 (47705303-47705621)
               

               
               1-314, gnl|Mm7|chr14 (68067031-68066722)
               


               
               437-643, gnl|bosTau2|chr12 (22182951-22183157)
               

               
               437-643, gnl|Hg17|chr13 (47728314-47728520)
               

               
               437-643, gnl|Mm7|chr14 (68048245-68048039)
               


               
               904-1681, gnl|bosTau2|chr12 (22186112-22186892)
               

               
               904-1681, gnl|Hg17|chr13 (47733274-47734048)
               

               
               904-1681, gnl|Mm7|chr14 (68044863-68044082)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-314, gnl|bosTau2|chr12 (22161440-22161761)
               

               
               1-314, gnl|Hg17|chr13 (47705303-47705621)
               

               
               1-314, gnl|Mm7|chr14 (68067031-68066722)
               


               
               437-643, gnl|bosTau2|chr12 (22182951-22183157)
               

               
               437-643, gnl|Hg17|chr13 (47728314-47728520)
               

               
               437-643, gnl|Mm7|chr14 (68048245-68048039)
               


               
               904-1681, gnl|bosTau2|chr12 (22186112-22186892)
               

               
               904-1681, gnl|Hg17|chr13 (47733274-47734048)
               

               
               904-1681, gnl|Mm7|chr14 (68044863-68044082)

Expressed library(ies): 91 entry(ies)

More info

Expressed library(ies): 91 entry(ies)

Help | Less info


               
               kid (10.6383)
               

               
               ret (9.01133)
               

               
               liv (8.19193)
               

               
               tra (5.53914)
               

               
               mgp (5.30565)
               

               
               fco (4.40182)
               

               
               mga (3.68472)
               

               
               sin (3.49895)
               

               
               clu (3.46973)
               

               
               fat (2.94855)
               

               
               ski (2.9347)
               

               
               cbe (2.87081)
               

               
               spl (2.86369)
               

               
               ova (2.45351)
               

               
               rec (2.42298)
               

               
               bfe (2.39772)
               

               
               mgm (2.34445)
               

               
               bla (2.23825)
               

               
               cty (1.97752)
               

               
               cbl (1.72196)
               

               
               cki (1.65235)
               

               
               sag (1.64444)
               

               
               hea (1.63599)
               

               
               lin (1.60163)
               

               
               lyg (1.59723)
               

               
               spc (1.58712)
               

               
               aor (1.56219)
               

               
               csk (1.54821)
               

               
               sug (1.52749)
               

               
               cov (1.45368)
               

               
               gul (1.42071)
               

               
               vin (1.33023)
               

               
               jej (1.28598)
               

               
               tbr (1.23343)
               

               
               isp (1.20301)
               

               
               mcp (1.19454)
               

               
               nco (1.13214)
               

               
               lun (1.05342)
               

               
               duo (1.03681)
               

               
               pro (1.02407)
               

               
               nje (0.99552)
               

               
               cst (0.980255)
               

               
               cmu (0.931966)
               

               
               nmm (0.929615)
               

               
               jca (0.911681)
               

               
               ldo (0.873024)
               

               
               amn (0.835422)
               

               
               fce (0.814775)
               

               
               csp (0.805932)
               

               
               ute (0.796707)
               

               
               ese (0.759013)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               ton (0.702001)
               

               
               ste (0.676041)
               

               
               nms (0.641574)
               

               
               tes (0.623441)
               

               
               sme (0.610874)
               

               
               cly (0.603209)
               

               
               fbs (0.526039)
               

               
               cut (0.509771)
               

               
               thg (0.507164)
               

               
               eep (0.490256)
               

               
               cli (0.458435)
               

               
               eli (0.455443)
               

               
               lnt (0.426925)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               fli (0.405762)
               

               
               nbm (0.397298)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               cje (0.330469)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               eru (0.120048)

Expressed library(ies): 91 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (10.6383)
               

               
               ret (9.01133)
               

               
               liv (8.19193)
               

               
               tra (5.53914)
               

               
               mgp (5.30565)
               

               
               fco (4.40182)
               

               
               mga (3.68472)
               

               
               sin (3.49895)
               

               
               clu (3.46973)
               

               
               fat (2.94855)
               

               
               ski (2.9347)
               

               
               cbe (2.87081)
               

               
               spl (2.86369)
               

               
               ova (2.45351)
               

               
               rec (2.42298)
               

               
               bfe (2.39772)
               

               
               mgm (2.34445)
               

               
               bla (2.23825)
               

               
               cty (1.97752)
               

               
               cbl (1.72196)
               

               
               cki (1.65235)
               

               
               sag (1.64444)
               

               
               hea (1.63599)
               

               
               lin (1.60163)
               

               
               lyg (1.59723)
               

               
               spc (1.58712)
               

               
               aor (1.56219)
               

               
               csk (1.54821)
               

               
               sug (1.52749)
               

               
               cov (1.45368)
               

               
               gul (1.42071)
               

               
               vin (1.33023)
               

               
               jej (1.28598)
               

               
               tbr (1.23343)
               

               
               isp (1.20301)
               

               
               mcp (1.19454)
               

               
               nco (1.13214)
               

               
               lun (1.05342)
               

               
               duo (1.03681)
               

               
               pro (1.02407)
               

               
               nje (0.99552)
               

               
               cst (0.980255)
               

               
               cmu (0.931966)
               

               
               nmm (0.929615)
               

               
               jca (0.911681)
               

               
               ldo (0.873024)
               

               
               amn (0.835422)
               

               
               fce (0.814775)
               

               
               csp (0.805932)
               

               
               ute (0.796707)
               

               
               ese (0.759013)
               

               
               cag (0.755972)
               

               
               pgl (0.7109)
               

               
               ton (0.702001)
               

               
               ste (0.676041)
               

               
               nms (0.641574)
               

               
               tes (0.623441)
               

               
               sme (0.610874)
               

               
               cly (0.603209)
               

               
               fbs (0.526039)
               

               
               cut (0.509771)
               

               
               thg (0.507164)
               

               
               eep (0.490256)
               

               
               cli (0.458435)
               

               
               eli (0.455443)
               

               
               lnt (0.426925)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               fli (0.405762)
               

               
               nbm (0.397298)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               cje (0.330469)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               eru (0.120048)

	1-314, gnl\|bosTau2\|chr12 (22161440-22161761)
	1-314, gnl\|Hg17\|chr13 (47705303-47705621)
	1-314, gnl\|Mm7\|chr14 (68067031-68066722)

	437-643, gnl\|bosTau2\|chr12 (22182951-22183157)
	437-643, gnl\|Hg17\|chr13 (47728314-47728520)
	437-643, gnl\|Mm7\|chr14 (68048245-68048039)

	904-1681, gnl\|bosTau2\|chr12 (22186112-22186892)
	904-1681, gnl\|Hg17\|chr13 (47733274-47734048)
	904-1681, gnl\|Mm7\|chr14 (68044863-68044082)

	kid (10.6383)
	ret (9.01133)
	liv (8.19193)
	tra (5.53914)
	mgp (5.30565)
	fco (4.40182)
	mga (3.68472)
	sin (3.49895)
	clu (3.46973)
	fat (2.94855)
	ski (2.9347)
	cbe (2.87081)
	spl (2.86369)
	ova (2.45351)
	rec (2.42298)
	bfe (2.39772)
	mgm (2.34445)
	bla (2.23825)
	cty (1.97752)
	cbl (1.72196)
	cki (1.65235)
	sag (1.64444)
	hea (1.63599)
	lin (1.60163)
	lyg (1.59723)
	spc (1.58712)
	aor (1.56219)
	csk (1.54821)
	sug (1.52749)
	cov (1.45368)
	gul (1.42071)
	vin (1.33023)
	jej (1.28598)
	tbr (1.23343)
	isp (1.20301)
	mcp (1.19454)
	nco (1.13214)
	lun (1.05342)
	duo (1.03681)
	pro (1.02407)
	nje (0.99552)
	cst (0.980255)
	cmu (0.931966)
	nmm (0.929615)
	jca (0.911681)
	ldo (0.873024)
	amn (0.835422)
	fce (0.814775)
	csp (0.805932)
	ute (0.796707)
	ese (0.759013)
	cag (0.755972)
	pgl (0.7109)
	ton (0.702001)
	ste (0.676041)
	nms (0.641574)
	tes (0.623441)
	sme (0.610874)
	cly (0.603209)
	fbs (0.526039)
	cut (0.509771)
	thg (0.507164)
	eep (0.490256)
	cli (0.458435)
	eli (0.455443)
	lnt (0.426925)
	hlv (0.417769)
	ssp (0.406559)
	fli (0.405762)
	nbm (0.397298)
	elu (0.385356)
	nlu (0.383362)
	nep (0.36785)
	med (0.348756)
	ecc (0.345105)
	cje (0.330469)
	eje (0.296501)
	cte (0.29274)
	pty (0.285429)
	cga (0.279096)
	pla (0.267344)
	ebs (0.236602)
	pan (0.23596)
	col (0.195008)
	sto (0.179824)
	fty (0.17584)
	ill (0.175593)
	eye (0.170503)
	nca (0.136874)
	che (0.136314)
	eru (0.120048)