Non-Coding RNA Search

Ss1.1-Tra1-TCH01A030098.5

Sequence:


               
               TGAGCCAGTTCCTCTCTCTTTTGTCTTTCGAGCTCTTCCTCTTCCCTCTTCTCCCTTTCC
TCCTTCTCTCTCTGCTCCCGGGCCAGTCGTCTCTTCTCAGCTAGCAGCCTCGTGGCCTCT
TCTGGGTCGGTGGTGCCTGCAGAGGTCTTGGGAGAAGCGCTGGCAGTCACGGTGGATGAT
GGGGCTGGGGCTGGACCTGGGGCTGGACCCGGGGCCGGGCCTGGGCCTGGGGCTGCTGCT
GGAACAGCAGGGGCAGCCTCTGGTTCGAGAGGTGTCGTGTCTTCAACTGTGGCTTCTTCT
ACCTTCACTAGGGGTGCTCTGGCCTTTAGTGAGGACTCATTGGCAACTTTCTGAGGTTCC
TTGTCGGGGTCTTTTCTCTCAGGTTCCACTCTGACTTCTCTCTTGATGGGGCGGATGTTG
CCAGGGGAGGGGGGCCGAGCCTGAGCGGGGGCAGCTTTGACGGATCCAGGAGGCGCGGAG
GGTGCCGGTCTGGGTGTGCCAGGCAAATGGGGAAAGGACTTGGATGGGAGCCAAAGTCGG
GAGGAAGCTGGTGACCTGGCTTTGGGATGAGATGGAGACAGAGCCCTTCGGGCGCCGGAT
GTGAGGTGGAAGGGTATGTTCTCTCTCTCCCTCTCTCTTTTATAGCCCGCTGTGCCGTGA
ACAGTCCTCCTTCGCGCAGAGCCCTCGGGCGGTGTTACAAAGAATTTTGGTCGCTCCATC
GGATTTCTAGAATGTGCAGCTTTGTAGGGCATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCCAGTTCCTCTCTCTTTTGTCTTTCGAGCTCTTCCTCTTCCCTCTTCTCCCTTTCC
TCCTTCTCTCTCTGCTCCCGGGCCAGTCGTCTCTTCTCAGCTAGCAGCCTCGTGGCCTCT
TCTGGGTCGGTGGTGCCTGCAGAGGTCTTGGGAGAAGCGCTGGCAGTCACGGTGGATGAT
GGGGCTGGGGCTGGACCTGGGGCTGGACCCGGGGCCGGGCCTGGGCCTGGGGCTGCTGCT
GGAACAGCAGGGGCAGCCTCTGGTTCGAGAGGTGTCGTGTCTTCAACTGTGGCTTCTTCT
ACCTTCACTAGGGGTGCTCTGGCCTTTAGTGAGGACTCATTGGCAACTTTCTGAGGTTCC
TTGTCGGGGTCTTTTCTCTCAGGTTCCACTCTGACTTCTCTCTTGATGGGGCGGATGTTG
CCAGGGGAGGGGGGCCGAGCCTGAGCGGGGGCAGCTTTGACGGATCCAGGAGGCGCGGAG
GGTGCCGGTCTGGGTGTGCCAGGCAAATGGGGAAAGGACTTGGATGGGAGCCAAAGTCGG
GAGGAAGCTGGTGACCTGGCTTTGGGATGAGATGGAGACAGAGCCCTTCGGGCGCCGGAT
GTGAGGTGGAAGGGTATGTTCTCTCTCTCCCTCTCTCTTTTATAGCCCGCTGTGCCGTGA
ACAGTCCTCCTTCGCGCAGAGCCCTCGGGCGGTGTTACAAAGAATTTTGGTCGCTCCATC
GGATTTCTAGAATGTGCAGCTTTGTAGGGCATGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R6P0_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R6P0_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               130-248, - strand, RNAz p=0.729666

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-248, - strand, RNAz p=0.729666

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               13-248, gnl|bosTau2|chr9 (43649330-43649095)
               

               
               13-248, gnl|canFam2|chr1 (31986590-31986743)
               

               
               13-248, gnl|danRer3|chr16 (36454474-36454340)
               

               
               13-248, gnl|dasNov1|scaffold_21401 (14811-14957)
               

               
               13-248, gnl|echTel1|scaffold_158198 (5330-5175)
               

               
               13-248, gnl|fr1|chrUn (159097924-159097798)
               

               
               13-248, gnl|galGal2|chr3 (54069652-54069524)
               

               
               13-248, gnl|hg17|chr6 (136725261-136725414)
               

               
               13-248, gnl|Hg17|chr6 (136725269-136725534)
               

               
               13-248, gnl|loxAfr1|scaffold_30007 (3035-3166)
               

               
               13-248, gnl|mm7|chr10 (19994257-19994121)
               

               
               13-248, gnl|Mm7|chr10 (19994263-19994023)
               

               
               13-248, gnl|monDom2|scaffold_0 (73818138-73817985)
               

               
               13-248, gnl|oryCun1|scaffold_158496 (674-521)
               

               
               13-248, gnl|panTro1|chr5 (139527236-139527389)
               

               
               13-248, gnl|rheMac2|chr4 (127475239-127475086)
               

               
               13-248, gnl|rn3|chr1 (15544321-15544169)
               

               
               13-248, gnl|tetNig1|chr14 (5891426-5891552)
               

               
               13-248, gnl|xenTro1|scaffold_163 (625026-624892)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-248, gnl|bosTau2|chr9 (43649330-43649095)
               

               
               13-248, gnl|canFam2|chr1 (31986590-31986743)
               

               
               13-248, gnl|danRer3|chr16 (36454474-36454340)
               

               
               13-248, gnl|dasNov1|scaffold_21401 (14811-14957)
               

               
               13-248, gnl|echTel1|scaffold_158198 (5330-5175)
               

               
               13-248, gnl|fr1|chrUn (159097924-159097798)
               

               
               13-248, gnl|galGal2|chr3 (54069652-54069524)
               

               
               13-248, gnl|hg17|chr6 (136725261-136725414)
               

               
               13-248, gnl|Hg17|chr6 (136725269-136725534)
               

               
               13-248, gnl|loxAfr1|scaffold_30007 (3035-3166)
               

               
               13-248, gnl|mm7|chr10 (19994257-19994121)
               

               
               13-248, gnl|Mm7|chr10 (19994263-19994023)
               

               
               13-248, gnl|monDom2|scaffold_0 (73818138-73817985)
               

               
               13-248, gnl|oryCun1|scaffold_158496 (674-521)
               

               
               13-248, gnl|panTro1|chr5 (139527236-139527389)
               

               
               13-248, gnl|rheMac2|chr4 (127475239-127475086)
               

               
               13-248, gnl|rn3|chr1 (15544321-15544169)
               

               
               13-248, gnl|tetNig1|chr14 (5891426-5891552)
               

               
               13-248, gnl|xenTro1|scaffold_163 (625026-624892)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	13-248, gnl\|bosTau2\|chr9 (43649330-43649095)
	13-248, gnl\|canFam2\|chr1 (31986590-31986743)
	13-248, gnl\|danRer3\|chr16 (36454474-36454340)
	13-248, gnl\|dasNov1\|scaffold_21401 (14811-14957)
	13-248, gnl\|echTel1\|scaffold_158198 (5330-5175)
	13-248, gnl\|fr1\|chrUn (159097924-159097798)
	13-248, gnl\|galGal2\|chr3 (54069652-54069524)
	13-248, gnl\|hg17\|chr6 (136725261-136725414)
	13-248, gnl\|Hg17\|chr6 (136725269-136725534)
	13-248, gnl\|loxAfr1\|scaffold_30007 (3035-3166)
	13-248, gnl\|mm7\|chr10 (19994257-19994121)
	13-248, gnl\|Mm7\|chr10 (19994263-19994023)
	13-248, gnl\|monDom2\|scaffold_0 (73818138-73817985)
	13-248, gnl\|oryCun1\|scaffold_158496 (674-521)
	13-248, gnl\|panTro1\|chr5 (139527236-139527389)
	13-248, gnl\|rheMac2\|chr4 (127475239-127475086)
	13-248, gnl\|rn3\|chr1 (15544321-15544169)
	13-248, gnl\|tetNig1\|chr14 (5891426-5891552)
	13-248, gnl\|xenTro1\|scaffold_163 (625026-624892)