Non-Coding RNA Search

Ss1.1-Tra1-TCH01A040021.5

Sequence:


               
               TCGACTCAGCTCCGTGAGCTGAGCTGCAACCATGGCGGTCACCGCTGAGGGCGCCCGTAG
GAAGGAGCGCGTCCTTTGCCTGTTTGACGTGGACGGTACCCTCACGCCGGCTCGCCAGAA
AATTGACCCTGAGGTGGCTGCCTTCCTGCAGAAGCTGCGCAGTAGGGTGCAGATCGGCGT
GGTGGGCGGCTCCGACTACTCTAAGATTGCCGAGCAGCTGGGAGAGGGGGATGAAGTCGT
CGAGAAGTTTGATTATGTGTTTGCTGAGAACGGAACCGTGCAGTATAAGCACGGACGACT
ACTGTCCAAGCAGACCATCCAGAACCACCTGGGCGAGGAACTCCTGCAGGACTTGATCAA
TTTCTGCCTCCACTACATGGCCCTGCTCAGGCTGCCCAAGAAGCGGGGAACCTTCATCGA
GTTCCGGAACGGCATGCTGAACATCTCGCCCATCGGCCGCAGCTGCACCCTGGAGGAGCG
CATCGAGTTCTCCGAGCTGGACAAGAAGGAGAAGATCCGGGAGAAGTTTGTGGAAGCCCT
GAAAACAGAGTTTGCCGGCAAAGGGCTGAGGTTCTCCCGAGGAGGCATGATCAGCTTTGA
CGTCTTCCCTGAGGGCTGGGACAAGCGCTACTGCCTGGACTGCCTGGACCAGGACTGCTT
CGACACCATCCACTTCTTTGGGAATGAGACCAGCCCTGGCGGGAACGACTTTGAAATCTA
CACCGACCCCCGGACCGTTGGCCACAGCGTGGTGTCCCCGCAGGACACTGTGCAGCGATG
CCGTGAGATCTTTTTCCCAGAGACGGCTCACGAGGCGTGACCAGGGGCCCTCGGGACTTC
CAGAAAGCTCTGCCTAGGCCTGAAGAGAGCCCCTGGCCCTGGTGTGTCGGGGAAAGGCAG
GGGGCACCGGAACCCCTCCTGTTACCTGCTGAAGGCCCACCTCCGTGGGCCCAGGGTCTA
GGGGGACAGCCACCCCCAGCCCGTCTGCCCCTGTGGGACTGGCCCCCGTCCTCCACCCCA
GGGCCCTGGCTACAGCTGCTGCCCGCACTTCTGAACAGAGCAGGTTTCTGTCTACGCGGG
AAGCGTGTGCGGGTGTTGGTACGCGGCAGAGCCCGCCCTGCCTGCCTGCCTGCCCTGGGT
GGTGTGGGCAGCGAGGAAGGTACATACTTGCGAGAACTTTATCTCATGGATATTAAATGA
TGGAATCCGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGACTCAGCTCCGTGAGCTGAGCTGCAACCATGGCGGTCACCGCTGAGGGCGCCCGTAG
GAAGGAGCGCGTCCTTTGCCTGTTTGACGTGGACGGTACCCTCACGCCGGCTCGCCAGAA
AATTGACCCTGAGGTGGCTGCCTTCCTGCAGAAGCTGCGCAGTAGGGTGCAGATCGGCGT
GGTGGGCGGCTCCGACTACTCTAAGATTGCCGAGCAGCTGGGAGAGGGGGATGAAGTCGT
CGAGAAGTTTGATTATGTGTTTGCTGAGAACGGAACCGTGCAGTATAAGCACGGACGACT
ACTGTCCAAGCAGACCATCCAGAACCACCTGGGCGAGGAACTCCTGCAGGACTTGATCAA
TTTCTGCCTCCACTACATGGCCCTGCTCAGGCTGCCCAAGAAGCGGGGAACCTTCATCGA
GTTCCGGAACGGCATGCTGAACATCTCGCCCATCGGCCGCAGCTGCACCCTGGAGGAGCG
CATCGAGTTCTCCGAGCTGGACAAGAAGGAGAAGATCCGGGAGAAGTTTGTGGAAGCCCT
GAAAACAGAGTTTGCCGGCAAAGGGCTGAGGTTCTCCCGAGGAGGCATGATCAGCTTTGA
CGTCTTCCCTGAGGGCTGGGACAAGCGCTACTGCCTGGACTGCCTGGACCAGGACTGCTT
CGACACCATCCACTTCTTTGGGAATGAGACCAGCCCTGGCGGGAACGACTTTGAAATCTA
CACCGACCCCCGGACCGTTGGCCACAGCGTGGTGTCCCCGCAGGACACTGTGCAGCGATG
CCGTGAGATCTTTTTCCCAGAGACGGCTCACGAGGCGTGACCAGGGGCCCTCGGGACTTC
CAGAAAGCTCTGCCTAGGCCTGAAGAGAGCCCCTGGCCCTGGTGTGTCGGGGAAAGGCAG
GGGGCACCGGAACCCCTCCTGTTACCTGCTGAAGGCCCACCTCCGTGGGCCCAGGGTCTA
GGGGGACAGCCACCCCCAGCCCGTCTGCCCCTGTGGGACTGGCCCCCGTCCTCCACCCCA
GGGCCCTGGCTACAGCTGCTGCCCGCACTTCTGAACAGAGCAGGTTTCTGTCTACGCGGG
AAGCGTGTGCGGGTGTTGGTACGCGGCAGAGCCCGCCCTGCCTGCCTGCCTGCCCTGGGT
GGTGTGGGCAGCGAGGAAGGTACATACTTGCGAGAACTTTATCTCATGGATATTAAATGA
TGGAATCCGTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|33468959|ref|NP_038900.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33468959|ref|NP_038900.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-118, gnl|bosTau2|chr5 (71311958-71312075)
               

               
               1-118, gnl|Hg17|chr22 (40310342-40310223)
               

               
               1-118, gnl|Mm7|chr15 (82045227-82045110)
               


               
               231-768, gnl|bosTau2|chr21 (11545479-11546017)
               

               
               231-768, gnl|Hg17|chr18 (12182761-12182224)
               

               
               231-768, gnl|Mm7|chr16 (8316493-8325185)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr5 (71311958-71312075)
               

               
               1-118, gnl|Hg17|chr22 (40310342-40310223)
               

               
               1-118, gnl|Mm7|chr15 (82045227-82045110)
               


               
               231-768, gnl|bosTau2|chr21 (11545479-11546017)
               

               
               231-768, gnl|Hg17|chr18 (12182761-12182224)
               

               
               231-768, gnl|Mm7|chr16 (8316493-8325185)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ece (0.45861)
               

               
               mcp (0.341297)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               mcp (0.341297)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-118, gnl\|bosTau2\|chr5 (71311958-71312075)
	1-118, gnl\|Hg17\|chr22 (40310342-40310223)
	1-118, gnl\|Mm7\|chr15 (82045227-82045110)

	231-768, gnl\|bosTau2\|chr21 (11545479-11546017)
	231-768, gnl\|Hg17\|chr18 (12182761-12182224)
	231-768, gnl\|Mm7\|chr16 (8316493-8325185)

	ece (0.45861)
	mcp (0.341297)
	nje (0.16592)
	hyp (0.142837)
	pla (0.133672)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)