Non-Coding RNA Search

Ss1.1-Tra1-TCH01A040026.5

Sequence:


               
               AAAAGAAACAGAAATTAAAATTCAGACGCTGACATCAGATCACAAATCTAAGGTCAAGGA
GATTGTGGCCCAGCACACAAAGGAGTGGTCGGACATGATCAACACCCACAGTGCAGAGGA
GCAGGAGATCCGGGACCTGCACCTCAGCCAGCAGTGCGAGCTGCTCAGAAAGCTCCTGAT
CAACGCCCATGAACAGCAGACCCAGCAGCTGAAACTGTCCCATGACAGGGAAAGCAAGGA
AATGCGAGCACACCAGGCTAAGATTTCTATGGAAAATAGCAAAGCCATCAGCCAAGATAA
ATCTATCAAGAATAAAGCAGAGCGGGAAAGGCGAGTCAGAGAATTAAACAGCAGCAACAC
TAAAAAGTTTCTGGAAGAGAGAAAGAGACTTGCAATGAAGCAGTCCAAAGAAATGGATCA
GTTGAAAAAAGTACAGCTTGAGCACCTCGAATTCCTAGAGAAACAGAATGAGCAGCTTTT
GAAATCCTGTCACGCAGTGTCCCAAACTCAAGGCGAAGGAGATGCAGCAGATGGTGAAAT
TGGAAGCCGAGATGGACCGCAGACCAGCAACAGTTGTGTGAAACTCCAGGACGCAAACTG
AAACGGCAGAACTGCAGCATCAAGAGAGCACTCCCAAATTTCTGAACACAACTTCCACAG
CAGAAAGCTGATGTCTTTTGCGTTTCCTTTACGTATAGACGAGCTGTTACCTGAAACCAC
AGAGACATGCTTCTCTTAAACATGTTGAATACTGAATCCCTTGGCCAACCAAAAGTAGCT
ACAAATCCACAAAATTACAGTCCAGTAAAGCAGAGTTTAACCCATTGATCATACTACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAAACAGAAATTAAAATTCAGACGCTGACATCAGATCACAAATCTAAGGTCAAGGA
GATTGTGGCCCAGCACACAAAGGAGTGGTCGGACATGATCAACACCCACAGTGCAGAGGA
GCAGGAGATCCGGGACCTGCACCTCAGCCAGCAGTGCGAGCTGCTCAGAAAGCTCCTGAT
CAACGCCCATGAACAGCAGACCCAGCAGCTGAAACTGTCCCATGACAGGGAAAGCAAGGA
AATGCGAGCACACCAGGCTAAGATTTCTATGGAAAATAGCAAAGCCATCAGCCAAGATAA
ATCTATCAAGAATAAAGCAGAGCGGGAAAGGCGAGTCAGAGAATTAAACAGCAGCAACAC
TAAAAAGTTTCTGGAAGAGAGAAAGAGACTTGCAATGAAGCAGTCCAAAGAAATGGATCA
GTTGAAAAAAGTACAGCTTGAGCACCTCGAATTCCTAGAGAAACAGAATGAGCAGCTTTT
GAAATCCTGTCACGCAGTGTCCCAAACTCAAGGCGAAGGAGATGCAGCAGATGGTGAAAT
TGGAAGCCGAGATGGACCGCAGACCAGCAACAGTTGTGTGAAACTCCAGGACGCAAACTG
AAACGGCAGAACTGCAGCATCAAGAGAGCACTCCCAAATTTCTGAACACAACTTCCACAG
CAGAAAGCTGATGTCTTTTGCGTTTCCTTTACGTATAGACGAGCTGTTACCTGAAACCAC
AGAGACATGCTTCTCTTAAACATGTTGAATACTGAATCCCTTGGCCAACCAAAAGTAGCT
ACAAATCCACAAAATTACAGTCCAGTAAAGCAGAGTTTAACCCATTGATCATACTACTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50756125|ref|XP_415028.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50756125|ref|XP_415028.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               51-229, - strand, RNAz p=0.991066
               

               
               112-229, - strand, RNAz p=0.689542

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-229, - strand, RNAz p=0.991066
               

               
               112-229, - strand, RNAz p=0.689542

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               51-229, gnl|bosTau2|chr13 (701759-701581)
               

               
               51-229, gnl|canFam2|chr24 (15764247-15764139)
               

               
               51-229, gnl|dasNov1|scaffold_10896 (1613-1505)
               

               
               51-229, gnl|echTel1|scaffold_234301 (1827-1719)
               

               
               51-229, gnl|fr1|chrUn (180742093-180742201)
               

               
               51-229, gnl|galGal2|chr14 (18267137-18267245)
               

               
               51-229, gnl|hg17|chr20 (9388281-9388389)
               

               
               51-229, gnl|Hg17|chr20 (9388280-9388458)
               

               
               51-229, gnl|mm7|chr2 (135740986-135741094)
               

               
               51-229, gnl|Mm7|chr2 (135740985-135741163)
               

               
               51-229, gnl|monDom2|scaffold_1 (41382043-41382151)
               

               
               51-229, gnl|oryCun1|scaffold_198547 (151565-151457)
               

               
               51-229, gnl|panTro1|chr21 (9278281-9278389)
               

               
               51-229, gnl|rheMac2|chr10 (42769900-42770008)
               

               
               51-229, gnl|rn3|chr3 (123968381-123968489)
               

               
               51-229, gnl|tetNig1|chr14 (7337562-7337454)
               

               
               51-229, gnl|xenTro1|scaffold_239 (1227350-1227458)
               


               
               511-839, gnl|bosTau2|chr13 (471610-471939)
               

               
               511-839, gnl|Hg17|chr20 (9407566-9407911)
               

               
               511-839, gnl|Mm7|chr2 (135753817-135754233)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-229, gnl|bosTau2|chr13 (701759-701581)
               

               
               51-229, gnl|canFam2|chr24 (15764247-15764139)
               

               
               51-229, gnl|dasNov1|scaffold_10896 (1613-1505)
               

               
               51-229, gnl|echTel1|scaffold_234301 (1827-1719)
               

               
               51-229, gnl|fr1|chrUn (180742093-180742201)
               

               
               51-229, gnl|galGal2|chr14 (18267137-18267245)
               

               
               51-229, gnl|hg17|chr20 (9388281-9388389)
               

               
               51-229, gnl|Hg17|chr20 (9388280-9388458)
               

               
               51-229, gnl|mm7|chr2 (135740986-135741094)
               

               
               51-229, gnl|Mm7|chr2 (135740985-135741163)
               

               
               51-229, gnl|monDom2|scaffold_1 (41382043-41382151)
               

               
               51-229, gnl|oryCun1|scaffold_198547 (151565-151457)
               

               
               51-229, gnl|panTro1|chr21 (9278281-9278389)
               

               
               51-229, gnl|rheMac2|chr10 (42769900-42770008)
               

               
               51-229, gnl|rn3|chr3 (123968381-123968489)
               

               
               51-229, gnl|tetNig1|chr14 (7337562-7337454)
               

               
               51-229, gnl|xenTro1|scaffold_239 (1227350-1227458)
               


               
               511-839, gnl|bosTau2|chr13 (471610-471939)
               

               
               511-839, gnl|Hg17|chr20 (9407566-9407911)
               

               
               511-839, gnl|Mm7|chr2 (135753817-135754233)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               aor (0.195274)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	51-229, - strand, RNAz p=0.991066
	112-229, - strand, RNAz p=0.689542

	51-229, gnl\|bosTau2\|chr13 (701759-701581)
	51-229, gnl\|canFam2\|chr24 (15764247-15764139)
	51-229, gnl\|dasNov1\|scaffold_10896 (1613-1505)
	51-229, gnl\|echTel1\|scaffold_234301 (1827-1719)
	51-229, gnl\|fr1\|chrUn (180742093-180742201)
	51-229, gnl\|galGal2\|chr14 (18267137-18267245)
	51-229, gnl\|hg17\|chr20 (9388281-9388389)
	51-229, gnl\|Hg17\|chr20 (9388280-9388458)
	51-229, gnl\|mm7\|chr2 (135740986-135741094)
	51-229, gnl\|Mm7\|chr2 (135740985-135741163)
	51-229, gnl\|monDom2\|scaffold_1 (41382043-41382151)
	51-229, gnl\|oryCun1\|scaffold_198547 (151565-151457)
	51-229, gnl\|panTro1\|chr21 (9278281-9278389)
	51-229, gnl\|rheMac2\|chr10 (42769900-42770008)
	51-229, gnl\|rn3\|chr3 (123968381-123968489)
	51-229, gnl\|tetNig1\|chr14 (7337562-7337454)
	51-229, gnl\|xenTro1\|scaffold_239 (1227350-1227458)

	511-839, gnl\|bosTau2\|chr13 (471610-471939)
	511-839, gnl\|Hg17\|chr20 (9407566-9407911)
	511-839, gnl\|Mm7\|chr2 (135753817-135754233)

	tes (0.207814)
	aor (0.195274)
	cly (0.120642)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)