Non-Coding RNA Search

Ss1.1-Tra1-TCH01A040070.5

Sequence:


               
               CCTTCCTGGCTGAAGCCTCAGTTATGACGCAACTTCGGCATAGCAACCTGGTACAGCTTC
TGGGCGTGATCGTAGAGGAGAAAGGCGGGCTCTACATCGTCACAGAGTACATGGCCAAGG
GGAGCCTGGTGGACTATCTGCGATCCCGGGGTCGGTCGGTGCTAGGCGGAGACTGCCTCC
TCAAGTTCTCGCTAGATGTCTGCGAGGCTATGGAATACCTGGAAGGCAACAACTTCGTGC
ACCGGGACCTGGCTGCCCGCAACGTGCTGGTATCTGAGGACAACGTGGCCAAGGTCAGCG
ACTTTGGCCTCACCAAGGAGGCCTCGAGCACCCAGGACACGGGCAAGCTGCCGGTCAAGT
GGACAGCCCCCGAGGCCCTGAGAGAGAAGAAATTCTCCACCAAGTCTGACGTGTGGAGTT
TCGGAATCCTTCTCTGGGAGATCTACTCCTTCGGGCGAGTGCCTTATCCGAGAATTCCCC
TAAAGGACGTTGTCCCTCGGGTGGAGAAGGGCTACAAGATGGACGCCCCTGACGGCTGCC
CTGCTGCGGTCTACGAGGTCATGAAGAACTGCTGGCACCTGGACGCCGCCACGCGGCCCT
CCTTCCTGCAGCTCCGTGAGCAGCTGGAGCACATCAAAACCCATGAGCTGCACCTGTGAC
TGCCAGCCCCCGCCTAGCTCGTGGGCCTGCGGGGACTGAACTCGGATGGATTGTGGACCT
GGTGCCCCAGCTCGCTGGGCCCAAACCCGAACTGAGCCCAGCGGGCCGGTGGGCCTCTTT
TCTCTGTCCCAGCCTGCGCCCCCTCTGGCTCCCAGAGACCTGCCTAGGACTGGCACCTTC
TCTCAAGGACCCACCTGGGGGGCTTTGGGAGCCCCGCCCAAGGGCCAAGAAGGGAGGAGG
CTGAGGAGCAGGAGGTGATGCCCCTTCCGTGGTCAGGCTCCCCCTGGCCTCCCACCTCTC
GCCTTCTTAGAGTTTTATTCCTTTCCTTTTTTGAGATTTTTTTTTCCGTGTGTTTATTTT
TTATTATTTTTCAAGATAAGGAGAAAGAAAGTACCCAGCAAATGGGCATTTTACAAGAAG
TACGAATCTTATTTTTCCTGTCCTGCCCGCAAGGGTTGGGGAGACCAGGCCCCTCTCTAG
GGACCCATCGCCCCAGCCTTGTTCCCCATCCAGTGTTCCGTGTCCGTGTCGCCTCGGTCG
CCCGGTGTCTGCGCTTGACCATGTTGCACTGTTTGCATGCGCCCGAGGCAGACGTCTGTC
AGGGGCTTGGAGTCCGTGTGCCGCTGCCGCCCGCCCACCTGCCTTGTGAGATGGAATCGT
AATAAACCACTCCATGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCCTGGCTGAAGCCTCAGTTATGACGCAACTTCGGCATAGCAACCTGGTACAGCTTC
TGGGCGTGATCGTAGAGGAGAAAGGCGGGCTCTACATCGTCACAGAGTACATGGCCAAGG
GGAGCCTGGTGGACTATCTGCGATCCCGGGGTCGGTCGGTGCTAGGCGGAGACTGCCTCC
TCAAGTTCTCGCTAGATGTCTGCGAGGCTATGGAATACCTGGAAGGCAACAACTTCGTGC
ACCGGGACCTGGCTGCCCGCAACGTGCTGGTATCTGAGGACAACGTGGCCAAGGTCAGCG
ACTTTGGCCTCACCAAGGAGGCCTCGAGCACCCAGGACACGGGCAAGCTGCCGGTCAAGT
GGACAGCCCCCGAGGCCCTGAGAGAGAAGAAATTCTCCACCAAGTCTGACGTGTGGAGTT
TCGGAATCCTTCTCTGGGAGATCTACTCCTTCGGGCGAGTGCCTTATCCGAGAATTCCCC
TAAAGGACGTTGTCCCTCGGGTGGAGAAGGGCTACAAGATGGACGCCCCTGACGGCTGCC
CTGCTGCGGTCTACGAGGTCATGAAGAACTGCTGGCACCTGGACGCCGCCACGCGGCCCT
CCTTCCTGCAGCTCCGTGAGCAGCTGGAGCACATCAAAACCCATGAGCTGCACCTGTGAC
TGCCAGCCCCCGCCTAGCTCGTGGGCCTGCGGGGACTGAACTCGGATGGATTGTGGACCT
GGTGCCCCAGCTCGCTGGGCCCAAACCCGAACTGAGCCCAGCGGGCCGGTGGGCCTCTTT
TCTCTGTCCCAGCCTGCGCCCCCTCTGGCTCCCAGAGACCTGCCTAGGACTGGCACCTTC
TCTCAAGGACCCACCTGGGGGGCTTTGGGAGCCCCGCCCAAGGGCCAAGAAGGGAGGAGG
CTGAGGAGCAGGAGGTGATGCCCCTTCCGTGGTCAGGCTCCCCCTGGCCTCCCACCTCTC
GCCTTCTTAGAGTTTTATTCCTTTCCTTTTTTGAGATTTTTTTTTCCGTGTGTTTATTTT
TTATTATTTTTCAAGATAAGGAGAAAGAAAGTACCCAGCAAATGGGCATTTTACAAGAAG
TACGAATCTTATTTTTCCTGTCCTGCCCGCAAGGGTTGGGGAGACCAGGCCCCTCTCTAG
GGACCCATCGCCCCAGCCTTGTTCCCCATCCAGTGTTCCGTGTCCGTGTCGCCTCGGTCG
CCCGGTGTCTGCGCTTGACCATGTTGCACTGTTTGCATGCGCCCGAGGCAGACGTCTGTC
AGGGGCTTGGAGTCCGTGTGCCGCTGCCGCCCGCCCACCTGCCTTGTGAGATGGAATCGT
AATAAACCACTCCATGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BIS9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BIS9_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               272-389, - strand, RNAz p=0.907289
               

               
               784-902, - strand, RNAz p=0.725298
               

               
               1019-1178, - strand, RNAz p=0.969583

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-389, - strand, RNAz p=0.907289
               

               
               784-902, - strand, RNAz p=0.725298
               

               
               1019-1178, - strand, RNAz p=0.969583

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               194-389, gnl|bosTau2|chr21 (22989346-22989541)
               

               
               194-389, gnl|Hg17|chr15 (72881089-72881284)
               

               
               194-389, gnl|Mm7|chr9 (57655739-57655544)
               


               
               477-1340, gnl|bosTau2|chr21 (22989985-22990858)
               

               
               477-1340, gnl|Hg17|chr15 (72881725-72882558)
               

               
               477-1340, gnl|Mm7|chr9 (57655169-57654320)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-389, gnl|bosTau2|chr21 (22989346-22989541)
               

               
               194-389, gnl|Hg17|chr15 (72881089-72881284)
               

               
               194-389, gnl|Mm7|chr9 (57655739-57655544)
               


               
               477-1340, gnl|bosTau2|chr21 (22989985-22990858)
               

               
               477-1340, gnl|Hg17|chr15 (72881725-72882558)
               

               
               477-1340, gnl|Mm7|chr9 (57655169-57654320)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               csp (0.644745)
               

               
               duo (0.345602)
               

               
               cly (0.241284)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.644745)
               

               
               duo (0.345602)
               

               
               cly (0.241284)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	272-389, - strand, RNAz p=0.907289
	784-902, - strand, RNAz p=0.725298
	1019-1178, - strand, RNAz p=0.969583

	194-389, gnl\|bosTau2\|chr21 (22989346-22989541)
	194-389, gnl\|Hg17\|chr15 (72881089-72881284)
	194-389, gnl\|Mm7\|chr9 (57655739-57655544)

	477-1340, gnl\|bosTau2\|chr21 (22989985-22990858)
	477-1340, gnl\|Hg17\|chr15 (72881725-72882558)
	477-1340, gnl\|Mm7\|chr9 (57655169-57654320)

	csp (0.644745)
	duo (0.345602)
	cly (0.241284)
	fli (0.202881)
	nep (0.183925)
	ill (0.175593)
	nco (0.161734)
	eli (0.151814)
	cag (0.151194)
	pty (0.142714)
	lnt (0.142308)
	cov (0.132153)
	eep (0.122564)
	med (0.116252)
	nbm (0.0993246)
	jej (0.0989218)