Non-Coding RNA Search

Ss1.1-Tra1-TCH01A040091.5

Sequence:


               
               GCAGGCGCGGCGTGGCCAGGGTGGGTGGGTAGCTTGGGGTGCGCCGGGAGCCGGCGCGGG
GACTCACGGGGTGGCCGCTCGCACGCAGGGGGCGTGGCCGTGCGACTCCGCAGGCCTGGG
ACCTGAGAGAATTCCAAGTAGGGTAGCTACGGTCGGAGGGTCAGTGGGGCCGGCTTCCTG
ACCCCCGTCGACCGTGCCCAGCCTGGTCTCGGCCGCTTTGTAGGTGCAATCGGACTCGCC
TTCGCGGGAGCCGGAGCGTCGGGGCTTCGCAGGCGACTGCACCCTGCCCGGCATGGCAGA
CCTGCCACTCCCACCGCCAGATCCCCAGTTTGTCCTCCGAGGCACCCAGTCAGCGGTGCA
TGCACTGCATTTCTGCGGAGGAGCCCAGGGGCAGGGCTGCCCGCTCCTCCTCTCAGGATC
CCTGCGTGGGCTGGTGCACATCTGGAGCCTGCAGACGCGGAGGGTGGTCGCCACCCTGGA
CGGACATGGGGGCCAATGTGTGACTTGGTTGCAGACCCTGCCCCAGGGGCCCCAGCTTCT
CAGCCAGGGCCGGGACCTGAAGCTGTGCCTGTGGGACCTGGCGGAGGGCAGGAACACCGT
TGTGGACTCCGTGCACCTGGAGAGCGTGGGCTTCTGCAGGGGCTCCATCCTGGCTGGGGG
CCAGCCACGCTGGATGCTGGCTGTGCCAGGGAGTGGCAGCGACGAGGCAAACTCCAGCCC
CCGCCCCCTCCTCCTGGCTGGCTATGAGGATGGCTCTGTGGCCCTCTGGGACGTCTCTGA
GCAGAAGGTGTGTAGCCGCATCGCCTGCCACACGGAGCCTGTCATGGGACTGGATGTTGA
TTCTCAGAAGGCCCGGGGCGTCTCAGGCTCTGCAGAGAAGGCACTGGCTGTCTGGAGTGT
GGATGAGCAGCAGGCCCTACAGGTGCGCAGGACCCACCAGCTCACCAACCCCGGAATTGC
TGACATCAAGATCCGGCCAGACCGCAAGATCCTGGCCACTGCGGGCTGGGACCATCGAGT
GCGTGTGTTTCTCTGGCAGACAATGAAGCCGCTGGCCGTGCTGGCTTTCCACAGTGCCAC
TGTCCATTGCGTGGCCTTCGCTGCTGACAGCTTGCTGGCCGCAGGGTCCGGAGATCATCG
CATCAGCATCTGGTCGCTCTACCCACACACATGACTCATGGCTCCTTGTCAGGATGTGCG
GACAGCAGAGGTGGTAGAGGGAAACCAAAGCCGTAGGTCTCGGCCCCTCTGGTTACAAAG
AGCCAGTCATGCAGACCCCCTTCCTGCCAGGACCTGCACCCTTTCATGAAGCACAACATC
TGTGCGATGGTAGCTGCAGTTTAAAGTGTGACCCAGCCAGACACTGGCACCTGTGGCCCC
AGGCAGGAGGCTGATGGGGCACCTGACATTAAACTTCTCTTTGCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCGCGGCGTGGCCAGGGTGGGTGGGTAGCTTGGGGTGCGCCGGGAGCCGGCGCGGG
GACTCACGGGGTGGCCGCTCGCACGCAGGGGGCGTGGCCGTGCGACTCCGCAGGCCTGGG
ACCTGAGAGAATTCCAAGTAGGGTAGCTACGGTCGGAGGGTCAGTGGGGCCGGCTTCCTG
ACCCCCGTCGACCGTGCCCAGCCTGGTCTCGGCCGCTTTGTAGGTGCAATCGGACTCGCC
TTCGCGGGAGCCGGAGCGTCGGGGCTTCGCAGGCGACTGCACCCTGCCCGGCATGGCAGA
CCTGCCACTCCCACCGCCAGATCCCCAGTTTGTCCTCCGAGGCACCCAGTCAGCGGTGCA
TGCACTGCATTTCTGCGGAGGAGCCCAGGGGCAGGGCTGCCCGCTCCTCCTCTCAGGATC
CCTGCGTGGGCTGGTGCACATCTGGAGCCTGCAGACGCGGAGGGTGGTCGCCACCCTGGA
CGGACATGGGGGCCAATGTGTGACTTGGTTGCAGACCCTGCCCCAGGGGCCCCAGCTTCT
CAGCCAGGGCCGGGACCTGAAGCTGTGCCTGTGGGACCTGGCGGAGGGCAGGAACACCGT
TGTGGACTCCGTGCACCTGGAGAGCGTGGGCTTCTGCAGGGGCTCCATCCTGGCTGGGGG
CCAGCCACGCTGGATGCTGGCTGTGCCAGGGAGTGGCAGCGACGAGGCAAACTCCAGCCC
CCGCCCCCTCCTCCTGGCTGGCTATGAGGATGGCTCTGTGGCCCTCTGGGACGTCTCTGA
GCAGAAGGTGTGTAGCCGCATCGCCTGCCACACGGAGCCTGTCATGGGACTGGATGTTGA
TTCTCAGAAGGCCCGGGGCGTCTCAGGCTCTGCAGAGAAGGCACTGGCTGTCTGGAGTGT
GGATGAGCAGCAGGCCCTACAGGTGCGCAGGACCCACCAGCTCACCAACCCCGGAATTGC
TGACATCAAGATCCGGCCAGACCGCAAGATCCTGGCCACTGCGGGCTGGGACCATCGAGT
GCGTGTGTTTCTCTGGCAGACAATGAAGCCGCTGGCCGTGCTGGCTTTCCACAGTGCCAC
TGTCCATTGCGTGGCCTTCGCTGCTGACAGCTTGCTGGCCGCAGGGTCCGGAGATCATCG
CATCAGCATCTGGTCGCTCTACCCACACACATGACTCATGGCTCCTTGTCAGGATGTGCG
GACAGCAGAGGTGGTAGAGGGAAACCAAAGCCGTAGGTCTCGGCCCCTCTGGTTACAAAG
AGCCAGTCATGCAGACCCCCTTCCTGCCAGGACCTGCACCCTTTCATGAAGCACAACATC
TGTGCGATGGTAGCTGCAGTTTAAAGTGTGACCCAGCCAGACACTGGCACCTGTGGCCCC
AGGCAGGAGGCTGATGGGGCACCTGACATTAAACTTCTCTTTGCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13359165|dbj|BAB33315.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13359165|dbj|BAB33315.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               889-1008, - strand, RNAz p=0.937295

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               889-1008, - strand, RNAz p=0.937295

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               541-707, gnl|bosTau2|chr17 (45855037-45855203)
               

               
               541-707, gnl|Hg17|chr22 (18174527-18174361)
               

               
               541-707, gnl|Mm7|chr16 (18093841-18094007)
               


               
               850-1178, gnl|bosTau2|chr17 (45862644-45862972)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               541-707, gnl|bosTau2|chr17 (45855037-45855203)
               

               
               541-707, gnl|Hg17|chr22 (18174527-18174361)
               

               
               541-707, gnl|Mm7|chr16 (18093841-18094007)
               


               
               850-1178, gnl|bosTau2|chr17 (45862644-45862972)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbr (0.511902)
               

               
               eli (0.303628)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.511902)
               

               
               eli (0.303628)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               eje (0.0988338)

	541-707, gnl\|bosTau2\|chr17 (45855037-45855203)
	541-707, gnl\|Hg17\|chr22 (18174527-18174361)
	541-707, gnl\|Mm7\|chr16 (18093841-18094007)

	850-1178, gnl\|bosTau2\|chr17 (45862644-45862972)

	cbr (0.511902)
	eli (0.303628)
	nms (0.213858)
	mcp (0.170648)
	nco (0.161734)
	ste (0.135208)
	pla (0.133672)
	eje (0.0988338)