Ss1.1-Tra1-TCH01A050007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCTTCCAGCCCACCACCAAATAGCAGCGTCCTCACCAGCGGCATTGGTGCAGATGTGG CCAGGATGTGGGAGATGGCCATCCAGCACGCCCTCATGCCCGTTATTCCCAAGGGCTCCT CCGTGGGTTCAGGAACCAACCTGCATAGAGATGTTTCTGTGAGCATTTCAGTCTCCAACT GCCAGATACAAGAAAATGTGGACATCAGCACAGTTTATCAGATTTTTCCTGATGAAGTAC TGGGTTCTGGGCAGTTCGGAATTGTTTATGGAGGAAAACATCGTAAAACAGGAAGAGATG TAGCTATTAAGATCATTGACAAGTTAAGATTTCCAACAAAACAAGAAAGCCAGCTTCGTA ATGAGGTTGCAATTCTTCAGAACCTTCATCACCCTGGTGTTGTAAATTTGGAGTGTATGT TTGAGACTCCTGAAAGAGTGTTTGTTGTTATGGAAAAACTCCATGGAGACATGCTGGAGA TGATCTTGTCAAGTGAAAAGGGCAGGTTGCCAGAGCACATAACGAAGTTTTTAATTACTC AGATACTTGTGGCTTTGCGTCATCTTCACTTTAAAAATATTGTGCACTGTGACCTCAAAC CAGAAAACGTGTTGCTAGCATCAGCTGACCCTTTCCCTCAGGTGAAACTTTGTGACTTTG GTTTTGCCCGGATCATTGGAGAGAAGTCATTCCGGAGGTCAGTGGTGGGTACCCCTGCTT ACCTGGCTCCCGAAGTCCTAAGGAACAAGGGCTATAATCGTTCTCTAGATATGTGGTCTG TTGGGGTCATCGTCTATGTAAGCCTAAGTGGCACATTTCCATTTAATGAGGATGAGGACA TCCACGACCAAATCCAGAATGCGGCTTTCATGTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCTTCCAGCCCACCACCAAATAGCAGCGTCCTCACCAGCGGCATTGGTGCAGATGTGG CCAGGATGTGGGAGATGGCCATCCAGCACGCCCTCATGCCCGTTATTCCCAAGGGCTCCT CCGTGGGTTCAGGAACCAACCTGCATAGAGATGTTTCTGTGAGCATTTCAGTCTCCAACT GCCAGATACAAGAAAATGTGGACATCAGCACAGTTTATCAGATTTTTCCTGATGAAGTAC TGGGTTCTGGGCAGTTCGGAATTGTTTATGGAGGAAAACATCGTAAAACAGGAAGAGATG TAGCTATTAAGATCATTGACAAGTTAAGATTTCCAACAAAACAAGAAAGCCAGCTTCGTA ATGAGGTTGCAATTCTTCAGAACCTTCATCACCCTGGTGTTGTAAATTTGGAGTGTATGT TTGAGACTCCTGAAAGAGTGTTTGTTGTTATGGAAAAACTCCATGGAGACATGCTGGAGA TGATCTTGTCAAGTGAAAAGGGCAGGTTGCCAGAGCACATAACGAAGTTTTTAATTACTC AGATACTTGTGGCTTTGCGTCATCTTCACTTTAAAAATATTGTGCACTGTGACCTCAAAC CAGAAAACGTGTTGCTAGCATCAGCTGACCCTTTCCCTCAGGTGAAACTTTGTGACTTTG GTTTTGCCCGGATCATTGGAGAGAAGTCATTCCGGAGGTCAGTGGTGGGTACCCCTGCTT ACCTGGCTCCCGAAGTCCTAAGGAACAAGGGCTATAATCGTTCTCTAGATATGTGGTCTG TTGGGGTCATCGTCTATGTAAGCCTAAGTGGCACATTTCCATTTAATGAGGATGAGGACA TCCACGACCAAATCCAGAATGCGGCTTTCATGTATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 3-151, gnl|bosTau2|chr21 (27204736-27204884) | |
| 3-151, gnl|Hg17|chr14 (29169843-29169695) | |
| 3-151, gnl|Mm7|chr12 (48395143-48394995) | |
| 368-548, gnl|bosTau2|chr11 (18848090-18847910) | |
| 368-548, gnl|canFam2|chr17 (32719144-32719324) | |
| 368-548, gnl|danRer3|chr17 (48040010-48040191) | |
| 368-548, gnl|dasNov1|scaffold_170326 (3531-3364) | |
| 368-548, gnl|echTel1|scaffold_294525 (3498-3660) | |
| 368-548, gnl|fr1|chrUn (176213850-176213678) | |
| 368-548, gnl|galGal2|chr3 (29832358-29832531) | |
| 368-548, gnl|hg17|chr2 (37399006-37399189) | |
| 368-548, gnl|Hg17|chr2 (37399194-37399011) | |
| 368-548, gnl|loxAfr1|scaffold_3391 (84403-84585) | |
| 368-548, gnl|mm7|chr17 (77257690-77257866) | |
| 368-548, gnl|Mm7|chr17 (77257871-77257690) | |
| 368-548, gnl|monDom2|scaffold_23 (39944401-39944573) | |
| 368-548, gnl|oryCun1|scaffold_118635 (14773-14591) | |
| 368-548, gnl|panTro1|chr12 (38864491-38864674) | |
| 368-548, gnl|rheMac2|chr13 (37241821-37242004) | |
| 368-548, gnl|rn3|chr6 (1735760-1735943) | |
| 368-548, gnl|tetNig1|chr10 (2745006-2744836) | |
| 368-548, gnl|xenTro1|scaffold_199 (1747142-1747323) | |
| 639-874, gnl|bosTau2|chr11 (18845120-18844885) | |
| 639-874, gnl|canFam2|chr17 (32716166-32716463) | |
| 639-874, gnl|danRer3|chr17 (48034098-48034369) | |
| 639-874, gnl|dasNov1|scaffold_45632 (46137-45855) | |
| 639-874, gnl|echTel1|scaffold_317676 (51448-51744) | |
| 639-874, gnl|fr1|chrUn (176214416-176214141) | |
| 639-874, gnl|galGal2|chr3 (29831304-29831598) | |
| 639-874, gnl|hg17|chr2 (37395455-37395752) | |
| 639-874, gnl|Hg17|chr2 (37395726-37395491) | |
| 639-874, gnl|loxAfr1|scaffold_3391 (81398-81694) | |
| 639-874, gnl|mm7|chr17 (77255027-77255326) | |
| 639-874, gnl|Mm7|chr17 (77255298-77255063) | |
| 639-874, gnl|monDom2|scaffold_23 (39942433-39942730) | |
| 639-874, gnl|oryCun1|scaffold_118635 (17787-17490) | |
| 639-874, gnl|panTro1|chr12 (38860944-38861241) | |
| 639-874, gnl|rheMac2|chr13 (37238227-37238518) | |
| 639-874, gnl|rn3|chr6 (1732874-1733173) | |
| 639-874, gnl|tetNig1|chr10 (2746187-2745915) | |
| 639-874, gnl|xenTro1|scaffold_199 (1740889-1741189) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-151, gnl|bosTau2|chr21 (27204736-27204884) | |
| 3-151, gnl|Hg17|chr14 (29169843-29169695) | |
| 3-151, gnl|Mm7|chr12 (48395143-48394995) | |
| 368-548, gnl|bosTau2|chr11 (18848090-18847910) | |
| 368-548, gnl|canFam2|chr17 (32719144-32719324) | |
| 368-548, gnl|danRer3|chr17 (48040010-48040191) | |
| 368-548, gnl|dasNov1|scaffold_170326 (3531-3364) | |
| 368-548, gnl|echTel1|scaffold_294525 (3498-3660) | |
| 368-548, gnl|fr1|chrUn (176213850-176213678) | |
| 368-548, gnl|galGal2|chr3 (29832358-29832531) | |
| 368-548, gnl|hg17|chr2 (37399006-37399189) | |
| 368-548, gnl|Hg17|chr2 (37399194-37399011) | |
| 368-548, gnl|loxAfr1|scaffold_3391 (84403-84585) | |
| 368-548, gnl|mm7|chr17 (77257690-77257866) | |
| 368-548, gnl|Mm7|chr17 (77257871-77257690) | |
| 368-548, gnl|monDom2|scaffold_23 (39944401-39944573) | |
| 368-548, gnl|oryCun1|scaffold_118635 (14773-14591) | |
| 368-548, gnl|panTro1|chr12 (38864491-38864674) | |
| 368-548, gnl|rheMac2|chr13 (37241821-37242004) | |
| 368-548, gnl|rn3|chr6 (1735760-1735943) | |
| 368-548, gnl|tetNig1|chr10 (2745006-2744836) | |
| 368-548, gnl|xenTro1|scaffold_199 (1747142-1747323) | |
| 639-874, gnl|bosTau2|chr11 (18845120-18844885) | |
| 639-874, gnl|canFam2|chr17 (32716166-32716463) | |
| 639-874, gnl|danRer3|chr17 (48034098-48034369) | |
| 639-874, gnl|dasNov1|scaffold_45632 (46137-45855) | |
| 639-874, gnl|echTel1|scaffold_317676 (51448-51744) | |
| 639-874, gnl|fr1|chrUn (176214416-176214141) | |
| 639-874, gnl|galGal2|chr3 (29831304-29831598) | |
| 639-874, gnl|hg17|chr2 (37395455-37395752) | |
| 639-874, gnl|Hg17|chr2 (37395726-37395491) | |
| 639-874, gnl|loxAfr1|scaffold_3391 (81398-81694) | |
| 639-874, gnl|mm7|chr17 (77255027-77255326) | |
| 639-874, gnl|Mm7|chr17 (77255298-77255063) | |
| 639-874, gnl|monDom2|scaffold_23 (39942433-39942730) | |
| 639-874, gnl|oryCun1|scaffold_118635 (17787-17490) | |
| 639-874, gnl|panTro1|chr12 (38860944-38861241) | |
| 639-874, gnl|rheMac2|chr13 (37238227-37238518) | |
| 639-874, gnl|rn3|chr6 (1732874-1733173) | |
| 639-874, gnl|tetNig1|chr10 (2746187-2745915) | |
| 639-874, gnl|xenTro1|scaffold_199 (1740889-1741189) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| cki (0.165235) |