Ss1.1-Tra1-TCH01A050008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCACGGGTGAGGAAGCCCCGCTCACACTCTTGGGCAGTGCGGGCCAGGCAGCTCAGG ATCCAGGCGTCCATGGGGGAGGTGGGGCACAACTCCTCTAGGGGCTGGGGTATGAATTTC TCCCCGAGGGCATTCAGGATAAAGCGCAGGGCATTCCAGATCTTGTTGCAGAAATGTCGG AAGCTCAGGACCTCAGAAACAGAAAGGTGCAAGTCGCCTCCCAGGACCCCATGGGAGCAC AGGGTGAATCTCAAGGCATCGGTTCCACACTCAGGAATCCCGTGAGGGAAGTCCTTTTTT TGTGCTGCAGCCGCGATCGCCAGCTCTGCAGGGTCCAAGTTCCCATCTCTCAGTTTTTCC TGCAGTACCTGCAGCTCCACCCCATTAATGATGTCCCGTGGGTCCAGCACATTCCCCAGG GACTTGCTCATCTTCCGGCCCTGCCTGTCCCGAACCATGGAGTGAAGCAGCACCTTGCTG AAGGGGAGCTGCCCTGTGAGCTGGGTTCCCAGCATGACCATACGGCCCACCCAGAATAGC AGAAGGTCACTGCCAGTTTCCAAAAGTGACAGGGGGTAGAAACGAGCCAGGTCTGGGGTC TCTTGGGGCCACCCCAGGGCAGAAAAGGGGAAAAGAGCCGAGGAGAACCACGTGTCCAGG ACATCAGGGTCCCTCTCCAGGGTCAGCTCGGCCCCTGGTCTCCCTGTCAGTTCTGCAGCT ACTTCTCTGGCCTCGGCCTCTGTCCGCCCGACCACCCAACAGTCCTCCGTGTTGCCCTTT GCACGCTCCTCTACAACCAGGTAGGCTGGAATCCGATGGCCCCACCACAGCTGCCGGGAG ACACACCAGTCCCCAATGTGGGAAAACCAGTGCTGCCAGTTCTTCTGGTGGAAGGAGGGA CTGAGCTCCAGGGCCCCCGACACCACTGCCTTAGCTGCTTGCTCCCCCATTTCCTGGCAG CGGACAAACCACTGGCTCTTCAGGAGATATTCCACCACATCCCCGGAACGGCTGCAAATG GGCAGCACCATGGGGTGGTTCTGGAGGCCCCGGAACAGGCCCCTCTCCCTCAGCGCTGAT ACAATCTTTTCCCGGGCCACAAATCGGTGAAGACCCTGCAGCCAGTCCCCGCAGAGCGAG GTCATGGTCCCATCCTCTGCGATGACACTCAGGGGGCTCAAGCCATGTCGGGCCCCCAGT TCAGCATCAGCAGGGCTGTGAGCTGGAGTCACCTTCACTGCCCCTGTGCCCAGGTGTGGC TGAACAGCGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCACGGGTGAGGAAGCCCCGCTCACACTCTTGGGCAGTGCGGGCCAGGCAGCTCAGG ATCCAGGCGTCCATGGGGGAGGTGGGGCACAACTCCTCTAGGGGCTGGGGTATGAATTTC TCCCCGAGGGCATTCAGGATAAAGCGCAGGGCATTCCAGATCTTGTTGCAGAAATGTCGG AAGCTCAGGACCTCAGAAACAGAAAGGTGCAAGTCGCCTCCCAGGACCCCATGGGAGCAC AGGGTGAATCTCAAGGCATCGGTTCCACACTCAGGAATCCCGTGAGGGAAGTCCTTTTTT TGTGCTGCAGCCGCGATCGCCAGCTCTGCAGGGTCCAAGTTCCCATCTCTCAGTTTTTCC TGCAGTACCTGCAGCTCCACCCCATTAATGATGTCCCGTGGGTCCAGCACATTCCCCAGG GACTTGCTCATCTTCCGGCCCTGCCTGTCCCGAACCATGGAGTGAAGCAGCACCTTGCTG AAGGGGAGCTGCCCTGTGAGCTGGGTTCCCAGCATGACCATACGGCCCACCCAGAATAGC AGAAGGTCACTGCCAGTTTCCAAAAGTGACAGGGGGTAGAAACGAGCCAGGTCTGGGGTC TCTTGGGGCCACCCCAGGGCAGAAAAGGGGAAAAGAGCCGAGGAGAACCACGTGTCCAGG ACATCAGGGTCCCTCTCCAGGGTCAGCTCGGCCCCTGGTCTCCCTGTCAGTTCTGCAGCT ACTTCTCTGGCCTCGGCCTCTGTCCGCCCGACCACCCAACAGTCCTCCGTGTTGCCCTTT GCACGCTCCTCTACAACCAGGTAGGCTGGAATCCGATGGCCCCACCACAGCTGCCGGGAG ACACACCAGTCCCCAATGTGGGAAAACCAGTGCTGCCAGTTCTTCTGGTGGAAGGAGGGA CTGAGCTCCAGGGCCCCCGACACCACTGCCTTAGCTGCTTGCTCCCCCATTTCCTGGCAG CGGACAAACCACTGGCTCTTCAGGAGATATTCCACCACATCCCCGGAACGGCTGCAAATG GGCAGCACCATGGGGTGGTTCTGGAGGCCCCGGAACAGGCCCCTCTCCCTCAGCGCTGAT ACAATCTTTTCCCGGGCCACAAATCGGTGAAGACCCTGCAGCCAGTCCCCGCAGAGCGAG GTCATGGTCCCATCCTCTGCGATGACACTCAGGGGGCTCAAGCCATGTCGGGCCCCCAGT TCAGCATCAGCAGGGCTGTGAGCTGGAGTCACCTTCACTGCCCCTGTGCCCAGGTGTGGC TGAACAGCGCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 93-226, gnl|bosTau2|chr23 (20654441-20654574) | |
| 93-226, gnl|canFam2|chr12 (3693200-3693317) | |
| 93-226, gnl|danRer3|chr19 (31916650-31916534) | |
| 93-226, gnl|echTel1|scaffold_254030 (6106-5989) | |
| 93-226, gnl|fr1|chrUn (204772229-204772112) | |
| 93-226, gnl|hg17|chr6 (30998854-30998971) | |
| 93-226, gnl|Hg17|chr6 (30998987-30998854) | |
| 93-226, gnl|loxAfr1|scaffold_4520 (33092-33209) | |
| 93-226, gnl|mm7|chr17 (33760110-33759993) | |
| 93-226, gnl|Mm7|chr17 (33759975-33760108) | |
| 93-226, gnl|monDom2|scaffold_42 (18412323-18412206) | |
| 93-226, gnl|panTro1|chr5 (31462111-31462228) | |
| 93-226, gnl|rheMac2|chr4 (30498704-30498821) | |
| 93-226, gnl|rn3|chr20 (3235843-3235960) | |
| 93-226, gnl|tetNig1|chr8 (9286371-9286488) | |
| 472-601, gnl|bosTau2|chr23 (20655423-20655552) | |
| 472-601, gnl|Hg17|chr6 (30997999-30997870) | |
| 472-601, gnl|Mm7|chr17 (33760713-33760842) | |
| 671-778, gnl|bosTau2|chr23 (20655938-20656045) | |
| 671-778, gnl|canFam2|chr12 (3691672-3691746) | |
| 671-778, gnl|danRer3|chr21 (18293677-18293748) | |
| 671-778, gnl|echTel1|scaffold_254030 (7595-7521) | |
| 671-778, gnl|fr1|chrUn (204773655-204773584) | |
| 671-778, gnl|hg17|chr6 (30997338-30997409) | |
| 671-778, gnl|Hg17|chr6 (30997447-30997343) | |
| 671-778, gnl|loxAfr1|scaffold_4520 (31629-31699) | |
| 671-778, gnl|mm7|chr17 (33761231-33761157) | |
| 671-778, gnl|Mm7|chr17 (33761117-33761224) | |
| 671-778, gnl|oryCun1|scaffold_135490 (476-402) | |
| 671-778, gnl|panTro1|chr5 (31460595-31460666) | |
| 671-778, gnl|rheMac2|chr4 (30497212-30497283) | |
| 671-778, gnl|rn3|chr20 (3234748-3234822) | |
| 671-778, gnl|xenTro1|scaffold_766 (299164-299090) | |
| 1115-1245, gnl|bosTau2|chr23 (20657333-20657463) | |
| 1115-1245, gnl|Hg17|chr6 (30995973-30995843) | |
| 1115-1245, gnl|Mm7|chr17 (33762815-33762945) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-226, gnl|bosTau2|chr23 (20654441-20654574) | |
| 93-226, gnl|canFam2|chr12 (3693200-3693317) | |
| 93-226, gnl|danRer3|chr19 (31916650-31916534) | |
| 93-226, gnl|echTel1|scaffold_254030 (6106-5989) | |
| 93-226, gnl|fr1|chrUn (204772229-204772112) | |
| 93-226, gnl|hg17|chr6 (30998854-30998971) | |
| 93-226, gnl|Hg17|chr6 (30998987-30998854) | |
| 93-226, gnl|loxAfr1|scaffold_4520 (33092-33209) | |
| 93-226, gnl|mm7|chr17 (33760110-33759993) | |
| 93-226, gnl|Mm7|chr17 (33759975-33760108) | |
| 93-226, gnl|monDom2|scaffold_42 (18412323-18412206) | |
| 93-226, gnl|panTro1|chr5 (31462111-31462228) | |
| 93-226, gnl|rheMac2|chr4 (30498704-30498821) | |
| 93-226, gnl|rn3|chr20 (3235843-3235960) | |
| 93-226, gnl|tetNig1|chr8 (9286371-9286488) | |
| 472-601, gnl|bosTau2|chr23 (20655423-20655552) | |
| 472-601, gnl|Hg17|chr6 (30997999-30997870) | |
| 472-601, gnl|Mm7|chr17 (33760713-33760842) | |
| 671-778, gnl|bosTau2|chr23 (20655938-20656045) | |
| 671-778, gnl|canFam2|chr12 (3691672-3691746) | |
| 671-778, gnl|danRer3|chr21 (18293677-18293748) | |
| 671-778, gnl|echTel1|scaffold_254030 (7595-7521) | |
| 671-778, gnl|fr1|chrUn (204773655-204773584) | |
| 671-778, gnl|hg17|chr6 (30997338-30997409) | |
| 671-778, gnl|Hg17|chr6 (30997447-30997343) | |
| 671-778, gnl|loxAfr1|scaffold_4520 (31629-31699) | |
| 671-778, gnl|mm7|chr17 (33761231-33761157) | |
| 671-778, gnl|Mm7|chr17 (33761117-33761224) | |
| 671-778, gnl|oryCun1|scaffold_135490 (476-402) | |
| 671-778, gnl|panTro1|chr5 (31460595-31460666) | |
| 671-778, gnl|rheMac2|chr4 (30497212-30497283) | |
| 671-778, gnl|rn3|chr20 (3234748-3234822) | |
| 671-778, gnl|xenTro1|scaffold_766 (299164-299090) | |
| 1115-1245, gnl|bosTau2|chr23 (20657333-20657463) | |
| 1115-1245, gnl|Hg17|chr6 (30995973-30995843) | |
| 1115-1245, gnl|Mm7|chr17 (33762815-33762945) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |