Ss1.1-Tra1-TCH01A050036.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGCTGTTAGGGTTACGGCTGTAGCTGGATGCGTAGCGGGTGTCCGATCATGGAGCGC CCGGGGCCCAGCGACGTGACAGGTTCAGACACATCGGGGCCGGACCCGCAGCTGGCGGTC ACCATGGGTTTCACGGGGTTCGGGAAAAAAGCTCGCACATTTGACTTGGAAGCAATGTTT GAACAAACTCGAAGAACGGCGGTGGAGAGAAGTCGGAAAACACTGGAAGCAAGAGAAAAA GAGGAAGAAATGAACAGAGAGAAAGAATTAAGAAGGCAAACTGAAGATATTGAACCGACA CCTTCAGGCTCAAATGTGGCCAGAGATTGCTCTAAACCATCGTCCAGAGGTACAAGCAGC AGTGAAAGTGAAGAGAGTTCTGATTCTTCTGACGATGAGTTAATTGGCCCCCCTTTACCA CTTAAAATGGTGGAAGAGCCAGTTAATCATTTGGAGGAAGATATCCTCGGTCCTTTGCCT GCTCCTCTGGGTGAAGAAGCAGAAGATGATGATGATGATGATGGTGACTCAGAAGAAGAG GAAAATCCTGTCCAAAAGATCCCTGACTCCCATGAGATAACTCTAAAGCATGGCACTAAA ACAGTTTCTGCTTTGGGTCTGGATCCCTCAGGTGCCCGTTTGGTGACTGGAGGATATGAC TATGATGTTAAGTTTTGGGATTTTGCTGGAATGGATGCTTCTTTTAAGGCATTTCGATCC CTGCAGCCCTGTGAATGCCATCAGATCAAGTCGTTACAGTACAGTAACACAGGAGACATG ATTCTTGTTGTATCTGGCAGCTCTCAGGCCAAAGTGATTGACAGAGATGGTTTCGAAGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGCTGTTAGGGTTACGGCTGTAGCTGGATGCGTAGCGGGTGTCCGATCATGGAGCGC CCGGGGCCCAGCGACGTGACAGGTTCAGACACATCGGGGCCGGACCCGCAGCTGGCGGTC ACCATGGGTTTCACGGGGTTCGGGAAAAAAGCTCGCACATTTGACTTGGAAGCAATGTTT GAACAAACTCGAAGAACGGCGGTGGAGAGAAGTCGGAAAACACTGGAAGCAAGAGAAAAA GAGGAAGAAATGAACAGAGAGAAAGAATTAAGAAGGCAAACTGAAGATATTGAACCGACA CCTTCAGGCTCAAATGTGGCCAGAGATTGCTCTAAACCATCGTCCAGAGGTACAAGCAGC AGTGAAAGTGAAGAGAGTTCTGATTCTTCTGACGATGAGTTAATTGGCCCCCCTTTACCA CTTAAAATGGTGGAAGAGCCAGTTAATCATTTGGAGGAAGATATCCTCGGTCCTTTGCCT GCTCCTCTGGGTGAAGAAGCAGAAGATGATGATGATGATGATGGTGACTCAGAAGAAGAG GAAAATCCTGTCCAAAAGATCCCTGACTCCCATGAGATAACTCTAAAGCATGGCACTAAA ACAGTTTCTGCTTTGGGTCTGGATCCCTCAGGTGCCCGTTTGGTGACTGGAGGATATGAC TATGATGTTAAGTTTTGGGATTTTGCTGGAATGGATGCTTCTTTTAAGGCATTTCGATCC CTGCAGCCCTGTGAATGCCATCAGATCAAGTCGTTACAGTACAGTAACACAGGAGACATG ATTCTTGTTGTATCTGGCAGCTCTCAGGCCAAAGTGATTGACAGAGATGGTTTCGAAGTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 226-347, gnl|bosTau2|chr20 (24646102-24645981) | |
| 226-347, gnl|canFam2|chr4 (74510779-74510934) | |
| 226-347, gnl|canFam2|chr4 (74510981-74510754) | |
| 226-347, gnl|dasNov1|scaffold_38670 (9433-9575) | |
| 226-347, gnl|dasNov1|scaffold_38670 (9627-9399) | |
| 226-347, gnl|echTel1|scaffold_215122 (11905-11737) | |
| 226-347, gnl|echTel1|scaffold_215122 (11687-11912) | |
| 226-347, gnl|hg17|chr5 (37427794-37428053) | |
| 226-347, gnl|Hg17|chr5 (37427858-37427979) | |
| 226-347, gnl|hg17|chrX (22581826-22581993) | |
| 226-347, gnl|loxAfr1|scaffold_20723 (31152-30982) | |
| 226-347, gnl|loxAfr1|scaffold_20723 (30931-31159) | |
| 226-347, gnl|mm7|chr15 (7909254-7909397) | |
| 226-347, gnl|mm7|chr15 (7909446-7909221) | |
| 226-347, gnl|Mm7|chr15 (7909396-7909275) | |
| 226-347, gnl|oryCun1|scaffold_156911 (527-305) | |
| 226-347, gnl|oryCun1|scaffold_167773 (614-469) | |
| 226-347, gnl|panTro1|chr4 (79331249-79330990) | |
| 226-347, gnl|panTro1|chrX_random (35481004-35481171) | |
| 226-347, gnl|rheMac2|chr6 (37228935-37229191) | |
| 226-347, gnl|rn3|chr2 (57612535-57612699) | |
| 226-347, gnl|rn3|chr2 (57612740-57612518) | |
| 600-737, gnl|bosTau2|chr20 (24847496-24847634) | |
| 600-737, gnl|canFam2|chr4 (74463127-74462980) | |
| 600-737, gnl|danRer3|chrNA (144563949-144563807) | |
| 600-737, gnl|dasNov1|scaffold_246913 (1752-1905) | |
| 600-737, gnl|echTel1|scaffold_98925 (1839-1984) | |
| 600-737, gnl|fr1|chrUn (66617740-66617880) | |
| 600-737, gnl|galGal2|chrZ_random (10599414-10599563) | |
| 600-737, gnl|hg17|chr5 (37479090-37479238) | |
| 600-737, gnl|Hg17|chr5 (37479093-37479231) | |
| 600-737, gnl|mm7|chr15 (7869665-7869519) | |
| 600-737, gnl|Mm7|chr15 (7869662-7869524) | |
| 600-737, gnl|monDom2|scaffold_20 (34683866-34683718) | |
| 600-737, gnl|oryCun1|scaffold_199775 (41292-41427) | |
| 600-737, gnl|panTro1|chr4 (105225605-105225457) | |
| 600-737, gnl|rheMac2|chr6 (37279445-37279593) | |
| 600-737, gnl|rn3|chr2 (57576299-57576153) | |
| 600-737, gnl|tetNig1|chr4 (1903429-1903570) | |
| 600-737, gnl|xenTro1|scaffold_363 (848973-848831) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-347, gnl|bosTau2|chr20 (24646102-24645981) | |
| 226-347, gnl|canFam2|chr4 (74510779-74510934) | |
| 226-347, gnl|canFam2|chr4 (74510981-74510754) | |
| 226-347, gnl|dasNov1|scaffold_38670 (9433-9575) | |
| 226-347, gnl|dasNov1|scaffold_38670 (9627-9399) | |
| 226-347, gnl|echTel1|scaffold_215122 (11905-11737) | |
| 226-347, gnl|echTel1|scaffold_215122 (11687-11912) | |
| 226-347, gnl|hg17|chr5 (37427794-37428053) | |
| 226-347, gnl|Hg17|chr5 (37427858-37427979) | |
| 226-347, gnl|hg17|chrX (22581826-22581993) | |
| 226-347, gnl|loxAfr1|scaffold_20723 (31152-30982) | |
| 226-347, gnl|loxAfr1|scaffold_20723 (30931-31159) | |
| 226-347, gnl|mm7|chr15 (7909254-7909397) | |
| 226-347, gnl|mm7|chr15 (7909446-7909221) | |
| 226-347, gnl|Mm7|chr15 (7909396-7909275) | |
| 226-347, gnl|oryCun1|scaffold_156911 (527-305) | |
| 226-347, gnl|oryCun1|scaffold_167773 (614-469) | |
| 226-347, gnl|panTro1|chr4 (79331249-79330990) | |
| 226-347, gnl|panTro1|chrX_random (35481004-35481171) | |
| 226-347, gnl|rheMac2|chr6 (37228935-37229191) | |
| 226-347, gnl|rn3|chr2 (57612535-57612699) | |
| 226-347, gnl|rn3|chr2 (57612740-57612518) | |
| 600-737, gnl|bosTau2|chr20 (24847496-24847634) | |
| 600-737, gnl|canFam2|chr4 (74463127-74462980) | |
| 600-737, gnl|danRer3|chrNA (144563949-144563807) | |
| 600-737, gnl|dasNov1|scaffold_246913 (1752-1905) | |
| 600-737, gnl|echTel1|scaffold_98925 (1839-1984) | |
| 600-737, gnl|fr1|chrUn (66617740-66617880) | |
| 600-737, gnl|galGal2|chrZ_random (10599414-10599563) | |
| 600-737, gnl|hg17|chr5 (37479090-37479238) | |
| 600-737, gnl|Hg17|chr5 (37479093-37479231) | |
| 600-737, gnl|mm7|chr15 (7869665-7869519) | |
| 600-737, gnl|Mm7|chr15 (7869662-7869524) | |
| 600-737, gnl|monDom2|scaffold_20 (34683866-34683718) | |
| 600-737, gnl|oryCun1|scaffold_199775 (41292-41427) | |
| 600-737, gnl|panTro1|chr4 (105225605-105225457) | |
| 600-737, gnl|rheMac2|chr6 (37279445-37279593) | |
| 600-737, gnl|rn3|chr2 (57576299-57576153) | |
| 600-737, gnl|tetNig1|chr4 (1903429-1903570) | |
| 600-737, gnl|xenTro1|scaffold_363 (848973-848831) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nca (0.136874) | |
| ste (0.135208) |