Non-Coding RNA Search

Ss1.1-Tra1-TCH01A050045.5

Sequence:


               
               GCTAAGAACCCAGGAGTGAAATGGACAGACTCATGGAATTTAGAGCCTCGTGGGGACGTT
GGACCCAGGCGACGATGAGTGAGATGAGGGGTAGGAAAGAGGAGGAGATGGGGTGACTGC
CTTGCAATCGTGGCCACCTAACTGGGCCCAAGGCTGGGCAAGAGTCTTGGGGAAGTCTGC
GAAAAACCTTAAGTGGAAAGGTCTGGGGCTGTTGGGAGTTGGAGCCCGTGTGAGCTCCCC
GTGGCTCCTTTAATCCATAATCAAGGGCCCGAGGAGCTGACTTTACAGCAGCGAGAGGGA
GTGGAGTGGGTGGGGGTGGGAAGAGAACCAGATGGATTAATTTGCTGGTCTCAACCAGTT
CAGAAACAAGATTATTTGGCCGTGACGGGCTGATCTTCAGCCTAAGTAAGCTACTTCAGA
TGCATAAGCCTAGTTGAATTTTAAACCCCAGCAAAACATTCCTCCCTGTAAATGTAAAAT
CTCACCCAACTCGATCCCCTGCCTTCCTCTCCCTCCCACCTTAGATGAGCAACTGCCTGT
TTCCACCCCTTCCCACTGCCTCTTCTCTCTGGGACTGGCTGACACCTTAGAAAGGTTAAC
GCCTTCTTTGACTGCCCATCATAGTGTATCTGTGTCACTCAGCACAGAACCAACTAGGCT
TATCTCAGCGGGTTCCCAGGTTTACAAGACTGCAGGAAACCTCCTAAGGAGAGGAGAGCA
GGTGGGCATGTCCCCAGCTGCTAGAAAGGGTGGGAAAGCGTCCTCATTGGATAGGGAGTG
TCCTGGGAAACCCCCTCGGTTCCTTCACGTGTCTTGGAACTCAGCTCCTGGGTCTCAAGA
GTGGTCCCTGGAAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCAGGTTGTGG
CCATTAGCTCTAGGACTCTTATTTTTCTGGCCATGGGCTCAGCTTCTTAGAAGTTCCGCT
GTCTCCTCTCTGAAAGACCAAATCTAACTCATATAACCAGCAACTTGGGGGCTGCCAATA
TGGCTTCACCCCTGCCATTCGAAAGGAGGGAGTGTATGGGGCAAATTCAGGTGGATGCAG
TATGTGTGTATGTATGCATGTGAGTGTGTGCGGTACCAGATATCTCTACAGAATGGAAAT
AAAACAAACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAAGAACCCAGGAGTGAAATGGACAGACTCATGGAATTTAGAGCCTCGTGGGGACGTT
GGACCCAGGCGACGATGAGTGAGATGAGGGGTAGGAAAGAGGAGGAGATGGGGTGACTGC
CTTGCAATCGTGGCCACCTAACTGGGCCCAAGGCTGGGCAAGAGTCTTGGGGAAGTCTGC
GAAAAACCTTAAGTGGAAAGGTCTGGGGCTGTTGGGAGTTGGAGCCCGTGTGAGCTCCCC
GTGGCTCCTTTAATCCATAATCAAGGGCCCGAGGAGCTGACTTTACAGCAGCGAGAGGGA
GTGGAGTGGGTGGGGGTGGGAAGAGAACCAGATGGATTAATTTGCTGGTCTCAACCAGTT
CAGAAACAAGATTATTTGGCCGTGACGGGCTGATCTTCAGCCTAAGTAAGCTACTTCAGA
TGCATAAGCCTAGTTGAATTTTAAACCCCAGCAAAACATTCCTCCCTGTAAATGTAAAAT
CTCACCCAACTCGATCCCCTGCCTTCCTCTCCCTCCCACCTTAGATGAGCAACTGCCTGT
TTCCACCCCTTCCCACTGCCTCTTCTCTCTGGGACTGGCTGACACCTTAGAAAGGTTAAC
GCCTTCTTTGACTGCCCATCATAGTGTATCTGTGTCACTCAGCACAGAACCAACTAGGCT
TATCTCAGCGGGTTCCCAGGTTTACAAGACTGCAGGAAACCTCCTAAGGAGAGGAGAGCA
GGTGGGCATGTCCCCAGCTGCTAGAAAGGGTGGGAAAGCGTCCTCATTGGATAGGGAGTG
TCCTGGGAAACCCCCTCGGTTCCTTCACGTGTCTTGGAACTCAGCTCCTGGGTCTCAAGA
GTGGTCCCTGGAAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCAGGTTGTGG
CCATTAGCTCTAGGACTCTTATTTTTCTGGCCATGGGCTCAGCTTCTTAGAAGTTCCGCT
GTCTCCTCTCTGAAAGACCAAATCTAACTCATATAACCAGCAACTTGGGGGCTGCCAATA
TGGCTTCACCCCTGCCATTCGAAAGGAGGGAGTGTATGGGGCAAATTCAGGTGGATGCAG
TATGTGTGTATGTATGCATGTGAGTGTGTGCGGTACCAGATATCTCTACAGAATGGAAAT
AAAACAAACTTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               49-164, + strand, RNAz p=0.914429
               

               
               686-790, - strand, RNAz p=0.998249

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-164, + strand, RNAz p=0.914429
               

               
               686-790, - strand, RNAz p=0.998249

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               686-790, DB815142 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB815142.1|), blast E-value=0, identity=98.1%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               686-790, DB815142 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB815142.1|), blast E-value=0, identity=98.1%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC021253, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC021253, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-1152, gnl|bosTau2|chr11 (81732360-81733507)
               

               
               10-1152, gnl|Hg17|chr9 (131026933-131028085)
               

               
               10-1152, gnl|Mm7|chr2 (31979720-31980753)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1152, gnl|bosTau2|chr11 (81732360-81733507)
               

               
               10-1152, gnl|Hg17|chr9 (131026933-131028085)
               

               
               10-1152, gnl|Mm7|chr2 (31979720-31980753)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cki (0.495704)
               

               
               hyp (0.285673)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.495704)
               

               
               hyp (0.285673)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	49-164, + strand, RNAz p=0.914429
	686-790, - strand, RNAz p=0.998249

	10-1152, gnl\|bosTau2\|chr11 (81732360-81733507)
	10-1152, gnl\|Hg17\|chr9 (131026933-131028085)
	10-1152, gnl\|Mm7\|chr2 (31979720-31980753)

	cki (0.495704)
	hyp (0.285673)
	fcc (0.197785)
	fbs (0.175346)
	cst (0.140036)
	nmm (0.132802)
	pgl (0.118483)
	ldo (0.0970026)