Ss1.1-Tra1-TCH01A060024.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTAGAAAGGGGCGGAGAAATCCAGAAGCTGCCTAGCCGGGAGCTGAGCTGTGGTCGGC TGAGCCCTGGGACAGCCTGCACAGCAGCTCAGGATGGCTTCAGGCAGGGCTCGCTGCACC CGAAAGCTCCGGAACTGGGTGGTGGAGCAAGTGGAGAGCGGGCAGTTCCCAGGAGTGTGC TGGGACGACGACGCCAAGACCATGTTCCGGATTCCCTGGAAGCATGCGGGCAAGCAGGAT TTCCGGGAGGATCAGGATGCAGCCTTCTTCAAGGCCTGGGCGATATTTAAGGGAAAGTAC AAGGAAGGGGACTCCGAAGGCCCTGCCATCTGGAAGACTCGTCTGCGCTGTGCCCTCAAC AAGAGTACTGAGTTTGAGGAGGTTCCTGAGAATGGCCACAGGGATGGGGCCGAGCCCTAC AAGGTGTACCGGCTGCTGCCACCAGGCACCCTCCCCGCTCAGCCAGGAAGCCAGAAATTA CCATCAAAGCGACGCCACAGTTCTGTGACCTGTGAGAAGGAGGAGGACGAGGTTACCACA AAGAACTGCACACTCAGCCCCTCCATCCTCCAGGACCCCTTCAAAAATGAGTTGGCAGAG ACCAATGGGGGAGCAGGCCATTCAGACTTGGGGAGCAGCAGCAGCAGCAACAGCCCTGAG TCTCCGGAAGGTAGGGTTACCACTGAGGCCCCTTTCCAAGGAGATCAAGTGTCCCTGGAG CATCTACTCCCTCCAAATTCAGACTACTCGCTGCTGCTCACCTTCATCTACGACGGGCAT GTGGTGGGCGAGGCCCAGGTGCAGAGCCTGGACTGTCGCCTTGTGGCCGAGCCGTCTGGC TCCCAGTGCAGCATAGAGCAGGTGATCTTTCCCAAACCCGGCCCACGAGAGCCCACCCAG CGCCTACTGAGCCAGCTCAAGAGAGGTGTCCTGGTGGCCAGCAACTCCCGAGGCCTGTTC GTGCAGCGCCTTTGCCCCGTCCCCATCTCCTGGAACGCGCCCCAGGCTCCCCCTGGTCCA GGCCCGCATCTGCTGCCCAGCAACGAGTGCGTGGAGCTCTTCAGAACCACCTACTTCTGC AGAGACCTGGCCAGGTACTTCCAGGGCCTGGGCCCCCCACCCAAGTTCCAGGTGACACTG AATTTCTGGGAGGAGAACACCAGCCCCAGCCACACCCCACAGAGTCCTATCACAGTGCAG ATGGAGCAGGCCTTCGCCCGGCGCTTACTAGAGGAGGCTCCAGAGGCGCAGGCAGCCACC ATGTCCCTGGTGCAGAGCCTGGGAGACCCAACCTCCTGCTCCCCTCTCTGCTCCTCCTAT CTGCTTTGAAAGAACCTCATTCTCCACACTGTCGACCTCCTTACCACGTGATGATTTTGT CCTTGAACTCCTCATGGACCCTGATTGGTGGGGAACTCAAGATGACTCTTTTATTTTATT TTTTGCCTTTTCAGTCCTCTTTCATCTTGCCTAAACTAGGCACGTAAAATGGCCTTTCAC GCTGCCCCCAACCCCAAAGCCCAGCACTTTATATTTTCTTCCTAGATCCTCGTTAAGGGT TTAAAATAAAATTTTATTGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTAGAAAGGGGCGGAGAAATCCAGAAGCTGCCTAGCCGGGAGCTGAGCTGTGGTCGGC TGAGCCCTGGGACAGCCTGCACAGCAGCTCAGGATGGCTTCAGGCAGGGCTCGCTGCACC CGAAAGCTCCGGAACTGGGTGGTGGAGCAAGTGGAGAGCGGGCAGTTCCCAGGAGTGTGC TGGGACGACGACGCCAAGACCATGTTCCGGATTCCCTGGAAGCATGCGGGCAAGCAGGAT TTCCGGGAGGATCAGGATGCAGCCTTCTTCAAGGCCTGGGCGATATTTAAGGGAAAGTAC AAGGAAGGGGACTCCGAAGGCCCTGCCATCTGGAAGACTCGTCTGCGCTGTGCCCTCAAC AAGAGTACTGAGTTTGAGGAGGTTCCTGAGAATGGCCACAGGGATGGGGCCGAGCCCTAC AAGGTGTACCGGCTGCTGCCACCAGGCACCCTCCCCGCTCAGCCAGGAAGCCAGAAATTA CCATCAAAGCGACGCCACAGTTCTGTGACCTGTGAGAAGGAGGAGGACGAGGTTACCACA AAGAACTGCACACTCAGCCCCTCCATCCTCCAGGACCCCTTCAAAAATGAGTTGGCAGAG ACCAATGGGGGAGCAGGCCATTCAGACTTGGGGAGCAGCAGCAGCAGCAACAGCCCTGAG TCTCCGGAAGGTAGGGTTACCACTGAGGCCCCTTTCCAAGGAGATCAAGTGTCCCTGGAG CATCTACTCCCTCCAAATTCAGACTACTCGCTGCTGCTCACCTTCATCTACGACGGGCAT GTGGTGGGCGAGGCCCAGGTGCAGAGCCTGGACTGTCGCCTTGTGGCCGAGCCGTCTGGC TCCCAGTGCAGCATAGAGCAGGTGATCTTTCCCAAACCCGGCCCACGAGAGCCCACCCAG CGCCTACTGAGCCAGCTCAAGAGAGGTGTCCTGGTGGCCAGCAACTCCCGAGGCCTGTTC GTGCAGCGCCTTTGCCCCGTCCCCATCTCCTGGAACGCGCCCCAGGCTCCCCCTGGTCCA GGCCCGCATCTGCTGCCCAGCAACGAGTGCGTGGAGCTCTTCAGAACCACCTACTTCTGC AGAGACCTGGCCAGGTACTTCCAGGGCCTGGGCCCCCCACCCAAGTTCCAGGTGACACTG AATTTCTGGGAGGAGAACACCAGCCCCAGCCACACCCCACAGAGTCCTATCACAGTGCAG ATGGAGCAGGCCTTCGCCCGGCGCTTACTAGAGGAGGCTCCAGAGGCGCAGGCAGCCACC ATGTCCCTGGTGCAGAGCCTGGGAGACCCAACCTCCTGCTCCCCTCTCTGCTCCTCCTAT CTGCTTTGAAAGAACCTCATTCTCCACACTGTCGACCTCCTTACCACGTGATGATTTTGT CCTTGAACTCCTCATGGACCCTGATTGGTGGGGAACTCAAGATGACTCTTTTATTTTATT TTTTGCCTTTTCAGTCCTCTTTCATCTTGCCTAAACTAGGCACGTAAAATGGCCTTTCAC GCTGCCCCCAACCCCAAAGCCCAGCACTTTATATTTTCTTCCTAGATCCTCGTTAAGGGT TTAAAATAAAATTTTATTGAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 128-247, - strand, RNAz p=0.874771 | |
| 527-621, - strand, RNAz p=0.652581 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 128-247, - strand, RNAz p=0.874771 | |
| 527-621, - strand, RNAz p=0.652581 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 90-274, gnl|bosTau2|chr10 (12349343-12349159) | |
| 90-274, gnl|Hg17|chr14 (23701189-23701374) | |
| 90-274, gnl|Mm7|chr14 (50472397-50472581) | |
| 457-688, gnl|bosTau2|chr10 (12348451-12348210) | |
| 457-688, gnl|canFam2|chr8 (7159858-7160191) | |
| 457-688, gnl|echTel1|scaffold_316077 (42601-42921) | |
| 457-688, gnl|hg17|chr14 (23702272-23702601) | |
| 457-688, gnl|Hg17|chr14 (23702426-23702948) | |
| 457-688, gnl|mm7|chr14 (50473321-50473623) | |
| 457-688, gnl|Mm7|chr14 (50473440-50473687) | |
| 457-688, gnl|monDom2|scaffold_12 (25604033-25603594) | |
| 457-688, gnl|oryCun1|scaffold_178102 (49671-49993) | |
| 457-688, gnl|panTro1|chr15 (22603932-22604264) | |
| 457-688, gnl|rheMac2|chr7 (87056947-87057278) | |
| 457-688, gnl|rn3|chr15 (33757047-33757365) | |
| 764-1130, gnl|bosTau2|chr10 (12347209-12346843) | |
| 764-1130, gnl|Hg17|chr14 (23703684-23704055) | |
| 764-1130, gnl|Mm7|chr14 (50474883-50475249) | |
| 1198-1371, gnl|bosTau2|chr10 (12345815-12345642) | |
| 1198-1371, gnl|canFam2|chr8 (7162417-7162682) | |
| 1198-1371, gnl|echTel1|scaffold_316077 (45326-45589) | |
| 1198-1371, gnl|hg17|chr14 (23705087-23705354) | |
| 1198-1371, gnl|Hg17|chr14 (23705168-23705341) | |
| 1198-1371, gnl|loxAfr1|scaffold_1306 (135975-136232) | |
| 1198-1371, gnl|mm7|chr14 (50476189-50476453) | |
| 1198-1371, gnl|Mm7|chr14 (50476266-50476440) | |
| 1198-1371, gnl|monDom2|scaffold_12 (25598720-25598524) | |
| 1198-1371, gnl|oryCun1|scaffold_178102 (52271-52533) | |
| 1198-1371, gnl|panTro1|chr15 (22606734-22607001) | |
| 1198-1371, gnl|rheMac2|chr7 (87059758-87060025) | |
| 1198-1371, gnl|rn3|chr15 (33760089-33760352) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-274, gnl|bosTau2|chr10 (12349343-12349159) | |
| 90-274, gnl|Hg17|chr14 (23701189-23701374) | |
| 90-274, gnl|Mm7|chr14 (50472397-50472581) | |
| 457-688, gnl|bosTau2|chr10 (12348451-12348210) | |
| 457-688, gnl|canFam2|chr8 (7159858-7160191) | |
| 457-688, gnl|echTel1|scaffold_316077 (42601-42921) | |
| 457-688, gnl|hg17|chr14 (23702272-23702601) | |
| 457-688, gnl|Hg17|chr14 (23702426-23702948) | |
| 457-688, gnl|mm7|chr14 (50473321-50473623) | |
| 457-688, gnl|Mm7|chr14 (50473440-50473687) | |
| 457-688, gnl|monDom2|scaffold_12 (25604033-25603594) | |
| 457-688, gnl|oryCun1|scaffold_178102 (49671-49993) | |
| 457-688, gnl|panTro1|chr15 (22603932-22604264) | |
| 457-688, gnl|rheMac2|chr7 (87056947-87057278) | |
| 457-688, gnl|rn3|chr15 (33757047-33757365) | |
| 764-1130, gnl|bosTau2|chr10 (12347209-12346843) | |
| 764-1130, gnl|Hg17|chr14 (23703684-23704055) | |
| 764-1130, gnl|Mm7|chr14 (50474883-50475249) | |
| 1198-1371, gnl|bosTau2|chr10 (12345815-12345642) | |
| 1198-1371, gnl|canFam2|chr8 (7162417-7162682) | |
| 1198-1371, gnl|echTel1|scaffold_316077 (45326-45589) | |
| 1198-1371, gnl|hg17|chr14 (23705087-23705354) | |
| 1198-1371, gnl|Hg17|chr14 (23705168-23705341) | |
| 1198-1371, gnl|loxAfr1|scaffold_1306 (135975-136232) | |
| 1198-1371, gnl|mm7|chr14 (50476189-50476453) | |
| 1198-1371, gnl|Mm7|chr14 (50476266-50476440) | |
| 1198-1371, gnl|monDom2|scaffold_12 (25598720-25598524) | |
| 1198-1371, gnl|oryCun1|scaffold_178102 (52271-52533) | |
| 1198-1371, gnl|panTro1|chr15 (22606734-22607001) | |
| 1198-1371, gnl|rheMac2|chr7 (87059758-87060025) | |
| 1198-1371, gnl|rn3|chr15 (33760089-33760352) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cga (0.558191) | |
| cov (0.396458) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| csp (0.322373) | |
| cag (0.302389) | |
| col (0.195008) | |
| cli (0.152812) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) | |
| cov (0.396458) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| csp (0.322373) | |
| cag (0.302389) | |
| col (0.195008) | |
| cli (0.152812) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |