Ss1.1-Tra1-TCH01A060052.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAGAAGTCAGCATCGCCACCATTCAGGATCCGCCCCAAGAAAAAGCTCCCCGCGCTGC TGCTGGGCCACTCGGCTGACCTGCGGCCCGGCGAGTTCGTGGTGGCCATCGGCAGCCCCT TCGCCCTGCAAAACACCGTGACCACGGGGATCGTGAGCACGGCCCAGCGGGACGGCCGCG AGCTGGGCCTCCGGGACTCGGACATGGACTATATCCAGACAGATGCCATCATCAACTACG GGAACTCCGGGGGACCGCTGGTGAACCTGGACGGCGAGGTCATTGGCATCAACACGCTCA AGGTGGCGGCCGGCATCTCCTTTGCCATCCCCTCGGACCGCATCGCGCGCTTCCTCACCG AGTTCCAGGACAAGCAGGGCAAAGACTGGAAAAAGCGCTTCATCGGCATACGAATGCGGA CAATCACACCAAGTTTGGTGGAAGAACTAAAGGCCAGTAACCCAGACTTCCCGGCGGTCA GCAGTGGGATTTACGTGCAGGAGGTTGTTCCAAATTCACCTTCTCAGAGAGGGGGCATCC AGGATGGCGACATCGTCGTCAAGGTCAACGGACGCCCTCTGGCCGACTCGAGCGAGCTGC AGGAGGCCGTGCTGACCGAGTCCCCGCTGCTGCTGGAGGTGCGGCGGGGCAACGACGACC TGCTCTTCAGCATCGCGCCCGAGGTGGTCCCGTGACGGCGGGGCCGCCTCCCTCCAGCCG ACCGGCGCCTGCGGCCCAGGACAGGGGCCAGCAGAGTGGTTCTGTCCAGAGCCACCGCCT CCCTCGGGGTCAGGACAAAGGACCGTAGTCGGTCCTCAGCGGAGCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAGAAGTCAGCATCGCCACCATTCAGGATCCGCCCCAAGAAAAAGCTCCCCGCGCTGC TGCTGGGCCACTCGGCTGACCTGCGGCCCGGCGAGTTCGTGGTGGCCATCGGCAGCCCCT TCGCCCTGCAAAACACCGTGACCACGGGGATCGTGAGCACGGCCCAGCGGGACGGCCGCG AGCTGGGCCTCCGGGACTCGGACATGGACTATATCCAGACAGATGCCATCATCAACTACG GGAACTCCGGGGGACCGCTGGTGAACCTGGACGGCGAGGTCATTGGCATCAACACGCTCA AGGTGGCGGCCGGCATCTCCTTTGCCATCCCCTCGGACCGCATCGCGCGCTTCCTCACCG AGTTCCAGGACAAGCAGGGCAAAGACTGGAAAAAGCGCTTCATCGGCATACGAATGCGGA CAATCACACCAAGTTTGGTGGAAGAACTAAAGGCCAGTAACCCAGACTTCCCGGCGGTCA GCAGTGGGATTTACGTGCAGGAGGTTGTTCCAAATTCACCTTCTCAGAGAGGGGGCATCC AGGATGGCGACATCGTCGTCAAGGTCAACGGACGCCCTCTGGCCGACTCGAGCGAGCTGC AGGAGGCCGTGCTGACCGAGTCCCCGCTGCTGCTGGAGGTGCGGCGGGGCAACGACGACC TGCTCTTCAGCATCGCGCCCGAGGTGGTCCCGTGACGGCGGGGCCGCCTCCCTCCAGCCG ACCGGCGCCTGCGGCCCAGGACAGGGGCCAGCAGAGTGGTTCTGTCCAGAGCCACCGCCT CCCTCGGGGTCAGGACAAAGGACCGTAGTCGGTCCTCAGCGGAGCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 528-646, + strand, RNAz p=0.557616 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 528-646, + strand, RNAz p=0.557616 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 44-236, gnl|bosTau2|chr26 (29376308-29376116) | |
| 44-236, gnl|canFam2|chr28 (35151897-35152107) | |
| 44-236, gnl|danRer3|chrUn (98492264-98492061) | |
| 44-236, gnl|dasNov1|scaffold_3095 (49079-48865) | |
| 44-236, gnl|echTel1|scaffold_201551 (1031-1258) | |
| 44-236, gnl|fr1|chrUn (223230100-223230302) | |
| 44-236, gnl|galGal2|chr6 (30338423-30338629) | |
| 44-236, gnl|hg17|chr10 (124256195-124256413) | |
| 44-236, gnl|Hg17|chr10 (124256199-124256391) | |
| 44-236, gnl|loxAfr1|scaffold_10999 (13822-14040) | |
| 44-236, gnl|mm7|chr7 (127333049-127333269) | |
| 44-236, gnl|Mm7|chr7 (127333053-127333245) | |
| 44-236, gnl|monDom2|scaffold_14 (36670499-36670284) | |
| 44-236, gnl|oryCun1|scaffold_199093 (96852-96637) | |
| 44-236, gnl|panTro1|chr8 (126576724-126576942) | |
| 44-236, gnl|rheMac2|chr9 (122122881-122123099) | |
| 44-236, gnl|rn3|chr1 (190451929-190452149) | |
| 44-236, gnl|tetNig1|chrUn_random (9507947-9508165) | |
| 44-236, gnl|xenTro1|scaffold_190 (1041162-1041389) | |
| 48-226, gnl|bosTau2|chr11 (7759679-7759501) | |
| 48-226, gnl|canFam2|chr17 (51681671-51681508) | |
| 48-226, gnl|danRer3|chr13 (9312255-9312418) | |
| 48-226, gnl|dasNov1|scaffold_54875 (2956-2793) | |
| 48-226, gnl|echTel1|scaffold_201551 (1040-1203) | |
| 48-226, gnl|fr1|chrUn (119565435-119565272) | |
| 48-226, gnl|galGal2|chrUn (122302374-122302537) | |
| 48-226, gnl|hg17|chr2 (74669700-74669863) | |
| 48-226, gnl|Hg17|chr2 (74669699-74669877) | |
| 48-226, gnl|loxAfr1|scaffold_8565 (19209-19372) | |
| 48-226, gnl|mm7|chr6 (83078952-83078789) | |
| 48-226, gnl|Mm7|chr6 (83078951-83078773) | |
| 48-226, gnl|monDom2|scaffold_10 (48132848-48132685) | |
| 48-226, gnl|oryCun1|scaffold_128785 (3249-3086) | |
| 48-226, gnl|panTro1|chr12 (77074109-77074272) | |
| 48-226, gnl|rheMac2|chr13 (74761250-74761413) | |
| 48-226, gnl|rn3|chr4 (117508916-117508753) | |
| 48-226, gnl|tetNig1|chr10 (5684933-5684770) | |
| 48-226, gnl|xenTro1|scaffold_1403 (5344-5507) | |
| 266-384, gnl|bosTau2|chr6 (65569848-65569966) | |
| 266-384, gnl|canFam2|chr3 (62918201-62918340) | |
| 266-384, gnl|danRer3|chrNA (61814262-61814395) | |
| 266-384, gnl|echTel1|scaffold_201551 (3410-3546) | |
| 266-384, gnl|fr1|chrUn (190791722-190791851) | |
| 266-384, gnl|galGal2|chr4 (81187788-81187911) | |
| 266-384, gnl|hg17|chr4 (8413867-8414010) | |
| 266-384, gnl|Hg17|chr4 (8413881-8413999) | |
| 266-384, gnl|loxAfr1|scaffold_10999 (16924-17058) | |
| 266-384, gnl|mm7|chr5 (34726491-34726350) | |
| 266-384, gnl|Mm7|chr5 (34726475-34726357) | |
| 266-384, gnl|monDom2|scaffold_10 (37686046-37686189) | |
| 266-384, gnl|oryCun1|scaffold_83322 (5209-5351) | |
| 266-384, gnl|panTro1|chr3 (8491036-8491177) | |
| 266-384, gnl|rheMac2|chr5 (474058-473917) | |
| 266-384, gnl|rn3|chr14 (80720865-80721006) | |
| 266-384, gnl|tetNig1|chrUn_random (99720430-99720292) | |
| 266-384, gnl|xenTro1|scaffold_158 (951916-952066) | |
| 528-828, gnl|bosTau2|chr6 (65577527-65577820) | |
| 528-828, gnl|Hg17|chr4 (8425767-8426038) | |
| 528-828, gnl|Mm7|chr5 (34715518-34715251) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-236, gnl|bosTau2|chr26 (29376308-29376116) | |
| 44-236, gnl|canFam2|chr28 (35151897-35152107) | |
| 44-236, gnl|danRer3|chrUn (98492264-98492061) | |
| 44-236, gnl|dasNov1|scaffold_3095 (49079-48865) | |
| 44-236, gnl|echTel1|scaffold_201551 (1031-1258) | |
| 44-236, gnl|fr1|chrUn (223230100-223230302) | |
| 44-236, gnl|galGal2|chr6 (30338423-30338629) | |
| 44-236, gnl|hg17|chr10 (124256195-124256413) | |
| 44-236, gnl|Hg17|chr10 (124256199-124256391) | |
| 44-236, gnl|loxAfr1|scaffold_10999 (13822-14040) | |
| 44-236, gnl|mm7|chr7 (127333049-127333269) | |
| 44-236, gnl|Mm7|chr7 (127333053-127333245) | |
| 44-236, gnl|monDom2|scaffold_14 (36670499-36670284) | |
| 44-236, gnl|oryCun1|scaffold_199093 (96852-96637) | |
| 44-236, gnl|panTro1|chr8 (126576724-126576942) | |
| 44-236, gnl|rheMac2|chr9 (122122881-122123099) | |
| 44-236, gnl|rn3|chr1 (190451929-190452149) | |
| 44-236, gnl|tetNig1|chrUn_random (9507947-9508165) | |
| 44-236, gnl|xenTro1|scaffold_190 (1041162-1041389) | |
| 48-226, gnl|bosTau2|chr11 (7759679-7759501) | |
| 48-226, gnl|canFam2|chr17 (51681671-51681508) | |
| 48-226, gnl|danRer3|chr13 (9312255-9312418) | |
| 48-226, gnl|dasNov1|scaffold_54875 (2956-2793) | |
| 48-226, gnl|echTel1|scaffold_201551 (1040-1203) | |
| 48-226, gnl|fr1|chrUn (119565435-119565272) | |
| 48-226, gnl|galGal2|chrUn (122302374-122302537) | |
| 48-226, gnl|hg17|chr2 (74669700-74669863) | |
| 48-226, gnl|Hg17|chr2 (74669699-74669877) | |
| 48-226, gnl|loxAfr1|scaffold_8565 (19209-19372) | |
| 48-226, gnl|mm7|chr6 (83078952-83078789) | |
| 48-226, gnl|Mm7|chr6 (83078951-83078773) | |
| 48-226, gnl|monDom2|scaffold_10 (48132848-48132685) | |
| 48-226, gnl|oryCun1|scaffold_128785 (3249-3086) | |
| 48-226, gnl|panTro1|chr12 (77074109-77074272) | |
| 48-226, gnl|rheMac2|chr13 (74761250-74761413) | |
| 48-226, gnl|rn3|chr4 (117508916-117508753) | |
| 48-226, gnl|tetNig1|chr10 (5684933-5684770) | |
| 48-226, gnl|xenTro1|scaffold_1403 (5344-5507) | |
| 266-384, gnl|bosTau2|chr6 (65569848-65569966) | |
| 266-384, gnl|canFam2|chr3 (62918201-62918340) | |
| 266-384, gnl|danRer3|chrNA (61814262-61814395) | |
| 266-384, gnl|echTel1|scaffold_201551 (3410-3546) | |
| 266-384, gnl|fr1|chrUn (190791722-190791851) | |
| 266-384, gnl|galGal2|chr4 (81187788-81187911) | |
| 266-384, gnl|hg17|chr4 (8413867-8414010) | |
| 266-384, gnl|Hg17|chr4 (8413881-8413999) | |
| 266-384, gnl|loxAfr1|scaffold_10999 (16924-17058) | |
| 266-384, gnl|mm7|chr5 (34726491-34726350) | |
| 266-384, gnl|Mm7|chr5 (34726475-34726357) | |
| 266-384, gnl|monDom2|scaffold_10 (37686046-37686189) | |
| 266-384, gnl|oryCun1|scaffold_83322 (5209-5351) | |
| 266-384, gnl|panTro1|chr3 (8491036-8491177) | |
| 266-384, gnl|rheMac2|chr5 (474058-473917) | |
| 266-384, gnl|rn3|chr14 (80720865-80721006) | |
| 266-384, gnl|tetNig1|chrUn_random (99720430-99720292) | |
| 266-384, gnl|xenTro1|scaffold_158 (951916-952066) | |
| 528-828, gnl|bosTau2|chr6 (65577527-65577820) | |
| 528-828, gnl|Hg17|chr4 (8425767-8426038) | |
| 528-828, gnl|Mm7|chr5 (34715518-34715251) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| ebs (0.118301) |