Non-Coding RNA Search

Ss1.1-Tra1-TCH01A060093.5

Sequence:


               
               AAGGGGGGTGGGCCGGGGGCGGGGAGGTTCGTTCCGCGGAGCCGCAGCCAGAACCGGGAC
CAGGAATCTCATTCAGGCCCGCTGGGTGAACGTTTGGCACAAGTTAGGGCGCAAAGCAGT
TTGTTCATTAGCACGGCCAGATGTTCAGTGGGAGGATCAGACTTGGCTGAACAGACTCCT
GTTTTATTAGGGAGTAGAGCCATGGCAGCTAGTCTCACGGACATAGGAAATTCATTTGAC
GACCCAACGAGTCCTTTAGTTAAGAGATCTAGAAACTCATCGATGGAAGATGATGATGAT
GTTGTGTTTGTTGAATCTATACAACCTCCTTCAGCTTCTGCTCCAGTAGTAACTGACCAA
GGAAACTTTGCTGCAACAGAAAAGGAAACGCTACAAGGAAATTATTCCCTAATGCTTCCT
TCCTCAAGAGATTTGGCTTCTCAGAAGGGAAAGATAAGTGAGACAATCGTTATTGATGAT
GAAGAGGACATAGAAACAAATGGAAAGGAAAAGAAAATTTCGTCCAGTTTTATTGAATGG
GTACTTCCTGAAACTAAAAACAGAACCAAAGATTTGGATTTCTCCACTTCCAGTCTTTCA
AGAAGTAAGACCAAGACTGCAGTAGGACCTTTTAATCCTGGTAGAATGAATGGGGCAGGA
GATGAATTTCAGAATGGAGAATTTGCAGCTCATCATAATCCTGATTCTTGGATCTCCCAG
TCAGCGTCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGGGTGGGCCGGGGGCGGGGAGGTTCGTTCCGCGGAGCCGCAGCCAGAACCGGGAC
CAGGAATCTCATTCAGGCCCGCTGGGTGAACGTTTGGCACAAGTTAGGGCGCAAAGCAGT
TTGTTCATTAGCACGGCCAGATGTTCAGTGGGAGGATCAGACTTGGCTGAACAGACTCCT
GTTTTATTAGGGAGTAGAGCCATGGCAGCTAGTCTCACGGACATAGGAAATTCATTTGAC
GACCCAACGAGTCCTTTAGTTAAGAGATCTAGAAACTCATCGATGGAAGATGATGATGAT
GTTGTGTTTGTTGAATCTATACAACCTCCTTCAGCTTCTGCTCCAGTAGTAACTGACCAA
GGAAACTTTGCTGCAACAGAAAAGGAAACGCTACAAGGAAATTATTCCCTAATGCTTCCT
TCCTCAAGAGATTTGGCTTCTCAGAAGGGAAAGATAAGTGAGACAATCGTTATTGATGAT
GAAGAGGACATAGAAACAAATGGAAAGGAAAAGAAAATTTCGTCCAGTTTTATTGAATGG
GTACTTCCTGAAACTAAAAACAGAACCAAAGATTTGGATTTCTCCACTTCCAGTCTTTCA
AGAAGTAAGACCAAGACTGCAGTAGGACCTTTTAATCCTGGTAGAATGAATGGGGCAGGA
GATGAATTTCAGAATGGAGAATTTGCAGCTCATCATAATCCTGATTCTTGGATCTCCCAG
TCAGCGTCCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T6E1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T6E1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               492-609, - strand, RNAz p=0.59054

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               492-609, - strand, RNAz p=0.59054

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               123-609, gnl|bosTau2|chr12 (20594750-20594246)
               

               
               123-609, gnl|Hg17|chr13 (19324330-19323829)
               

               
               123-609, gnl|Mm7|chr14 (51672582-51672134)
               


               
               626-732, gnl|bosTau2|chr21 (28032233-28032128)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-609, gnl|bosTau2|chr12 (20594750-20594246)
               

               
               123-609, gnl|Hg17|chr13 (19324330-19323829)
               

               
               123-609, gnl|Mm7|chr14 (51672582-51672134)
               


               
               626-732, gnl|bosTau2|chr21 (28032233-28032128)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               liv (0.146284)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               jej (0.0989218)

	123-609, gnl\|bosTau2\|chr12 (20594750-20594246)
	123-609, gnl\|Hg17\|chr13 (19324330-19323829)
	123-609, gnl\|Mm7\|chr14 (51672582-51672134)

	626-732, gnl\|bosTau2\|chr21 (28032233-28032128)