Non-Coding RNA Search

Ss1.1-Tra1-TCH01A070022.5

Sequence:


               
               AGGAGCACAGCGGAGGTTCACTCTGGGGTGTCGCGAGGGAGGGCTGCAGCGTCGGGACTT
GCGAGGGCGACACAGCCCTAGCAGGTGGAACTGGGCTATTTGCTGAAGCTTCTTTCCCTG
TTAGCCCAAGGAGAAATTTATATTTTAGCTTTTCCTTACCATGGCTTTGGTTCACAAATT
GTTGAATGGCACTTATATTCGTAGAAAATGCCTGAAGCCAAGTGTTGCCTCATTGTCCAA
GTGTGGTCCATTTTTGAGTACTCGCTTTGCAGACTATTGCTCCAGTAGCCTTCAGAAACC
TTCAGTGCCTGCTTCTGGCAAAGCTTCTTCTCAGAGGAAGACCGAAGGAAATGTGGAAGG
GCATCACCAAAGAGATGTTGCTTTGGATATAACTTCTCCTGGGGACAAGCCTGAAGTCAG
TTTTGATAAAGCAATTAAAGAAGAAATAAAGGACCATTTAAGGCGTTTGAAGAATGATAT
AGTGAATCATTGGATAGGGCCTGAAGGTCGCCCTCTGCATGAGGTCTTGCTGGAACAAGC
CAAGGTTGTCTGGCAGTTCCGTGGCAAAGAAGATTTGGATAAGTGGATAGTGACTTCTGA
TAAGACAATTGGTGGCAGAAGTGAAGCTTTCCTAAAGATGGGCAAGAATAACCAAAGTGC
ACTCCTGTATGGAACCCTGAGCTCTGAGGCACCTCAGGATGGGGAGAGTGGCCGAAGTGG
GTACTGTGCGATGATATCCAAGGTTCCCAGGGGACCTTTTGAGATAAAGAAGTCTTATGA
TTGGTCTCAGTTCAACACTCTGTATCTCCGTGTTCGTGGAGATGGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGCACAGCGGAGGTTCACTCTGGGGTGTCGCGAGGGAGGGCTGCAGCGTCGGGACTT
GCGAGGGCGACACAGCCCTAGCAGGTGGAACTGGGCTATTTGCTGAAGCTTCTTTCCCTG
TTAGCCCAAGGAGAAATTTATATTTTAGCTTTTCCTTACCATGGCTTTGGTTCACAAATT
GTTGAATGGCACTTATATTCGTAGAAAATGCCTGAAGCCAAGTGTTGCCTCATTGTCCAA
GTGTGGTCCATTTTTGAGTACTCGCTTTGCAGACTATTGCTCCAGTAGCCTTCAGAAACC
TTCAGTGCCTGCTTCTGGCAAAGCTTCTTCTCAGAGGAAGACCGAAGGAAATGTGGAAGG
GCATCACCAAAGAGATGTTGCTTTGGATATAACTTCTCCTGGGGACAAGCCTGAAGTCAG
TTTTGATAAAGCAATTAAAGAAGAAATAAAGGACCATTTAAGGCGTTTGAAGAATGATAT
AGTGAATCATTGGATAGGGCCTGAAGGTCGCCCTCTGCATGAGGTCTTGCTGGAACAAGC
CAAGGTTGTCTGGCAGTTCCGTGGCAAAGAAGATTTGGATAAGTGGATAGTGACTTCTGA
TAAGACAATTGGTGGCAGAAGTGAAGCTTTCCTAAAGATGGGCAAGAATAACCAAAGTGC
ACTCCTGTATGGAACCCTGAGCTCTGAGGCACCTCAGGATGGGGAGAGTGGCCGAAGTGG
GTACTGTGCGATGATATCCAAGGTTCCCAGGGGACCTTTTGAGATAAAGAAGTCTTATGA
TTGGTCTCAGTTCAACACTCTGTATCTCCGTGTTCGTGGAGATGGTCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61857670|ref|XP_615202.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857670|ref|XP_615202.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               468-627, + strand, RNAz p=0.888758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               468-627, + strand, RNAz p=0.888758

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               82-755, gnl|bosTau2|chr10 (24851963-24851304)
               

               
               82-755, gnl|Hg17|chr15 (39476633-39475973)
               

               
               82-755, gnl|Mm7|chr2 (119401511-119400847)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-755, gnl|bosTau2|chr10 (24851963-24851304)
               

               
               82-755, gnl|Hg17|chr15 (39476633-39475973)
               

               
               82-755, gnl|Mm7|chr2 (119401511-119400847)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               kid (0.129735)

	82-755, gnl\|bosTau2\|chr10 (24851963-24851304)
	82-755, gnl\|Hg17\|chr15 (39476633-39475973)
	82-755, gnl\|Mm7\|chr2 (119401511-119400847)