Ss1.1-Tra1-TCH01A070046.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTTTGGCGGAAGTGCTTCACCTGCACGCGTCCGCGGGGCCGGGACCCTCAGCCAGCTCC ACCCTCAGGTGGTTTGAACTTTGAACTTCTTGCCCTGATGAACAGTTTCGCCTTCCTCAA GTTTATAACACTTGAAACTACAAGAACTGGCGGTTTTATGCAGTTTGAGACCAGTCAGCA CTAAGCAGAGTTCGGAGTGCTAAGAGAAAGAGCTTAAAATGGCTTCCAGAGGAAAGACAG AGACAAGCAAATTAAAGCAGAATTTAGAAGAGCAGTTGGATAGACTAATGCAGCAGTTAC AAGACCTGGAGGAATGCAGAGAAGAACTTGATACAGATGAATACGAAGAAACCAAAAAGG AAACTTTGGAGCAACTAAGTGAATTTAATGATTCACTGAAGAAAATTATGTCTGGAAATA TGACTTTGGTAGATGAACTAAGTGGAATGCAGCTGGCTATCCAGGCAGCTATCAGCCAGG CCTTTAAAACTCCAGAGGTCATCAGATTGTTTGCAAAGAAACAACCAGGTCAGCTTCGGA CAAGGTTAGCAGAGATGGATAGAGATCTCATGGTTGGGAAGCTGGAAAGAGACCTGTATA CGCAACAGAAAGTGGAGATACTAACAGCTCTCAGGAAACTCGGAGAGAAGCTGACTGCAG ACGATGAGGCCTTCTTGGCAGCAAACGCAGGTGCTATACTCAGCCAGTTTGAGAAGGTCT CTACAGACCTTGGCTCTGGAGACAAAGTTCTTGCTTTGGCAAGTTTTGAGGTTGAAAAAA CAAAAAAATGACATGGTGTGAAAGCTGGGGACGTTGATCTTGTTCTCGTTGTAAATGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTTTGGCGGAAGTGCTTCACCTGCACGCGTCCGCGGGGCCGGGACCCTCAGCCAGCTCC ACCCTCAGGTGGTTTGAACTTTGAACTTCTTGCCCTGATGAACAGTTTCGCCTTCCTCAA GTTTATAACACTTGAAACTACAAGAACTGGCGGTTTTATGCAGTTTGAGACCAGTCAGCA CTAAGCAGAGTTCGGAGTGCTAAGAGAAAGAGCTTAAAATGGCTTCCAGAGGAAAGACAG AGACAAGCAAATTAAAGCAGAATTTAGAAGAGCAGTTGGATAGACTAATGCAGCAGTTAC AAGACCTGGAGGAATGCAGAGAAGAACTTGATACAGATGAATACGAAGAAACCAAAAAGG AAACTTTGGAGCAACTAAGTGAATTTAATGATTCACTGAAGAAAATTATGTCTGGAAATA TGACTTTGGTAGATGAACTAAGTGGAATGCAGCTGGCTATCCAGGCAGCTATCAGCCAGG CCTTTAAAACTCCAGAGGTCATCAGATTGTTTGCAAAGAAACAACCAGGTCAGCTTCGGA CAAGGTTAGCAGAGATGGATAGAGATCTCATGGTTGGGAAGCTGGAAAGAGACCTGTATA CGCAACAGAAAGTGGAGATACTAACAGCTCTCAGGAAACTCGGAGAGAAGCTGACTGCAG ACGATGAGGCCTTCTTGGCAGCAAACGCAGGTGCTATACTCAGCCAGTTTGAGAAGGTCT CTACAGACCTTGGCTCTGGAGACAAAGTTCTTGCTTTGGCAAGTTTTGAGGTTGAAAAAA CAAAAAAATGACATGGTGTGAAAGCTGGGGACGTTGATCTTGTTCTCGTTGTAAATGCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 209-319, gnl|bosTau2|chr16 (31066331-31066221) | |
| 209-319, gnl|canFam2|chr5 (66118792-66118914) | |
| 209-319, gnl|danRer3|chrUn (158742063-158742170) | |
| 209-319, gnl|dasNov1|scaffold_34880 (5513-5391) | |
| 209-319, gnl|echTel1|scaffold_309843 (7150-7028) | |
| 209-319, gnl|fr1|chrUn (203438044-203438188) | |
| 209-319, gnl|galGal2|chr21 (3434624-3434747) | |
| 209-319, gnl|hg17|chr1 (9930840-9930962) | |
| 209-319, gnl|Hg17|chr1 (9930953-9930843) | |
| 209-319, gnl|loxAfr1|scaffold_113648 (4697-4819) | |
| 209-319, gnl|mm7|chr4 (148476407-148476286) | |
| 209-319, gnl|Mm7|chr4 (148476292-148476402) | |
| 209-319, gnl|monDom2|scaffold_177 (796127-796005) | |
| 209-319, gnl|oryCun1|scaffold_173522 (31255-31133) | |
| 209-319, gnl|panTro1|chr1 (9958441-9958563) | |
| 209-319, gnl|rheMac2|chr1 (13017216-13017338) | |
| 209-319, gnl|rn3|chr5 (166579384-166579263) | |
| 209-319, gnl|tetNig1|chr9 (2507670-2507563) | |
| 209-319, gnl|xenTro1|scaffold_745 (149806-149915) | |
| 728-837, gnl|bosTau2|chr16 (31061978-31061868) | |
| 728-837, gnl|Hg17|chr1 (9924787-9924677) | |
| 728-837, gnl|Mm7|chr4 (148485616-148485726) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 209-319, gnl|bosTau2|chr16 (31066331-31066221) | |
| 209-319, gnl|canFam2|chr5 (66118792-66118914) | |
| 209-319, gnl|danRer3|chrUn (158742063-158742170) | |
| 209-319, gnl|dasNov1|scaffold_34880 (5513-5391) | |
| 209-319, gnl|echTel1|scaffold_309843 (7150-7028) | |
| 209-319, gnl|fr1|chrUn (203438044-203438188) | |
| 209-319, gnl|galGal2|chr21 (3434624-3434747) | |
| 209-319, gnl|hg17|chr1 (9930840-9930962) | |
| 209-319, gnl|Hg17|chr1 (9930953-9930843) | |
| 209-319, gnl|loxAfr1|scaffold_113648 (4697-4819) | |
| 209-319, gnl|mm7|chr4 (148476407-148476286) | |
| 209-319, gnl|Mm7|chr4 (148476292-148476402) | |
| 209-319, gnl|monDom2|scaffold_177 (796127-796005) | |
| 209-319, gnl|oryCun1|scaffold_173522 (31255-31133) | |
| 209-319, gnl|panTro1|chr1 (9958441-9958563) | |
| 209-319, gnl|rheMac2|chr1 (13017216-13017338) | |
| 209-319, gnl|rn3|chr5 (166579384-166579263) | |
| 209-319, gnl|tetNig1|chr9 (2507670-2507563) | |
| 209-319, gnl|xenTro1|scaffold_745 (149806-149915) | |
| 728-837, gnl|bosTau2|chr16 (31061978-31061868) | |
| 728-837, gnl|Hg17|chr1 (9924787-9924677) | |
| 728-837, gnl|Mm7|chr4 (148485616-148485726) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| eru (0.120048) |