Ss1.1-Tra1-TCH01A070066.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCGCCCTCCTCCCTCTTCCTAGCTCCAGCTCTGCCACCAGCTCAGGCCTCGGCGCCCC CTCCCTGAGCCCCCTCCCCGGAGCCGAGCCCACCCGAGGGCATCTCTCCCGGCCCCCAGC CCAGCCGCCAGAACAGCAGCCCCGGGGGGCAGCCCCCCGCCAGTCTGCCTCCCTCCAGCC CAGCCCTGCCAGATCCCCCCAACCATGAATCTCTTCCGATTCCTGGGAGACCTCTCCCAC CTCCTAGCCATCATCTTGCTACTGCTCAAAATCTGGAAGTCCCGCTCGTGTGCCGGGATT TCGGGGAAGAGCCAGGTCCTGTTTGCTGTGGTGTTCACTGCCCGATACCTGGACCTCTTC ACCAACTACATCTCCCTCTACAACACGTGCATGAAGGTGGTCTACATTGCCTGCTCTTTC ACCACAGTCTGGATGATTTACAGCAAGTTCAAAGCCACTTACGATGGGAACCATGACACA TTCCGGGTGGAGTTCCTTGTTGTTCCCACGGCCATCCTGGCATTCTTGGTCAACCATGAC TTTACCCCTCTAGAGATCCTCTGGACCTTCTCCATCTACCTGGAGTCGGTGGCCATCCTG CCACAGCTGTTCATGGTGAGCAAGACGGGCGAGGCAGAGACCATCACCAGCCACTACTTG TTTGCGCTGGGCGTCTACCGCACGCTCTATCTCTTCAACTGGATCTGGCGCTACCACTTC GAGGGCTTCTTCGACCTCATCGCCATCGTGGCGGGCCTGGTCCAGACGGTCCTCTACTGC GACTTCTTCTACCTCTACATCACCAAAGTCCTAAAGGGGAAGAAGCTGAGTTTGCCCGCG TAGCCCTGGTCCTCGCCATCCCTCTCCAGGGCAGCCAGCGGCGAGAGGCTGCGGAAGGCG GCGAAAGATGAAGAGCCTTCCTATCCAGGAGTGACTTTTTTAAGAACCAACCTCGCCCAC CTCCTCGGCCCCCCTCCTGCCGGGTTTCGGGGGGCGGTGGAGGACCCAAGTCTTGGGGAG CTCAGGACCTGGGCTGTTTGTAGTTTTTTGCCTTTTAGAGAAGAAAAAAAAATCTTTCCA CTCTTTAGTTTTTGATTCTGATGACTTCTTTCTCTTCTACTCTCTGGCCCCGATTTTTAT AAACCATTTTCGAGTGTCCTGTGGGGCGGGGTGGGGTCTTTATCCTCCCCTCAAGCCCCT GGTTTCCTTCCAGATCTGAACTGCCCCCTCAGCCCCCCCAGTTGCCAAACACTAAATCTG CTGATTTTTAAACACAGCCACCTTCCTGGCCTCCCACCGTGGCCACCAAGACAGCCCCCC ATTCTCCGTGCCACCCCCCAACTTCTGCATTGGGGAGGGGGAGGAGGGGAGGCAAGACCT TCCCCGATATTCTTTATAATTTTTTTTCCAGAGTTTGGGGGGTTTCGGTCTTGCTCTTGT GTTTTTTGGCAATTTTTGGGGGGGGCGGGCTGGCCCAAGGGTCATGGTGACTCCCACAGC CACGTTTTTGTACAGAATTGATGGTTGATTCTTTGTTCTCTTGAAATAAACTGAGGAAAA GGATGCCTCGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCGCCCTCCTCCCTCTTCCTAGCTCCAGCTCTGCCACCAGCTCAGGCCTCGGCGCCCC CTCCCTGAGCCCCCTCCCCGGAGCCGAGCCCACCCGAGGGCATCTCTCCCGGCCCCCAGC CCAGCCGCCAGAACAGCAGCCCCGGGGGGCAGCCCCCCGCCAGTCTGCCTCCCTCCAGCC CAGCCCTGCCAGATCCCCCCAACCATGAATCTCTTCCGATTCCTGGGAGACCTCTCCCAC CTCCTAGCCATCATCTTGCTACTGCTCAAAATCTGGAAGTCCCGCTCGTGTGCCGGGATT TCGGGGAAGAGCCAGGTCCTGTTTGCTGTGGTGTTCACTGCCCGATACCTGGACCTCTTC ACCAACTACATCTCCCTCTACAACACGTGCATGAAGGTGGTCTACATTGCCTGCTCTTTC ACCACAGTCTGGATGATTTACAGCAAGTTCAAAGCCACTTACGATGGGAACCATGACACA TTCCGGGTGGAGTTCCTTGTTGTTCCCACGGCCATCCTGGCATTCTTGGTCAACCATGAC TTTACCCCTCTAGAGATCCTCTGGACCTTCTCCATCTACCTGGAGTCGGTGGCCATCCTG CCACAGCTGTTCATGGTGAGCAAGACGGGCGAGGCAGAGACCATCACCAGCCACTACTTG TTTGCGCTGGGCGTCTACCGCACGCTCTATCTCTTCAACTGGATCTGGCGCTACCACTTC GAGGGCTTCTTCGACCTCATCGCCATCGTGGCGGGCCTGGTCCAGACGGTCCTCTACTGC GACTTCTTCTACCTCTACATCACCAAAGTCCTAAAGGGGAAGAAGCTGAGTTTGCCCGCG TAGCCCTGGTCCTCGCCATCCCTCTCCAGGGCAGCCAGCGGCGAGAGGCTGCGGAAGGCG GCGAAAGATGAAGAGCCTTCCTATCCAGGAGTGACTTTTTTAAGAACCAACCTCGCCCAC CTCCTCGGCCCCCCTCCTGCCGGGTTTCGGGGGGCGGTGGAGGACCCAAGTCTTGGGGAG CTCAGGACCTGGGCTGTTTGTAGTTTTTTGCCTTTTAGAGAAGAAAAAAAAATCTTTCCA CTCTTTAGTTTTTGATTCTGATGACTTCTTTCTCTTCTACTCTCTGGCCCCGATTTTTAT AAACCATTTTCGAGTGTCCTGTGGGGCGGGGTGGGGTCTTTATCCTCCCCTCAAGCCCCT GGTTTCCTTCCAGATCTGAACTGCCCCCTCAGCCCCCCCAGTTGCCAAACACTAAATCTG CTGATTTTTAAACACAGCCACCTTCCTGGCCTCCCACCGTGGCCACCAAGACAGCCCCCC ATTCTCCGTGCCACCCCCCAACTTCTGCATTGGGGAGGGGGAGGAGGGGAGGCAAGACCT TCCCCGATATTCTTTATAATTTTTTTTCCAGAGTTTGGGGGGTTTCGGTCTTGCTCTTGT GTTTTTTGGCAATTTTTGGGGGGGGCGGGCTGGCCCAAGGGTCATGGTGACTCCCACAGC CACGTTTTTGTACAGAATTGATGGTTGATTCTTTGTTCTCTTGAAATAAACTGAGGAAAA GGATGCCTCGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-263, - strand, RNAz p=0.999934 | |
| 920-1240, - strand, RNAz p=0.999789 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-263, - strand, RNAz p=0.999934 | |
| 920-1240, - strand, RNAz p=0.999789 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-296, gnl|bosTau2|chr18 (50408476-50408776) | |
| 1-296, gnl|Hg17|chr19 (53586636-53586336) | |
| 1-296, gnl|Mm7|chr7 (42049041-42049336) | |
| 395-555, gnl|bosTau2|chr18 (50409825-50409985) | |
| 395-555, gnl|canFam2|chr1 (110747994-110747811) | |
| 395-555, gnl|danRer3|chrNA (90139359-90139525) | |
| 395-555, gnl|dasNov1|scaffold_22712 (5040-4857) | |
| 395-555, gnl|echTel1|scaffold_294780 (5028-4849) | |
| 395-555, gnl|fr1|chrUn (56138471-56138289) | |
| 395-555, gnl|galGal2|chr1 (47624720-47624896) | |
| 395-555, gnl|hg17|chr19 (53584617-53584800) | |
| 395-555, gnl|Hg17|chr19 (53584782-53584622) | |
| 395-555, gnl|loxAfr1|scaffold_8774 (28172-27992) | |
| 395-555, gnl|mm7|chr7 (42050442-42050263) | |
| 395-555, gnl|Mm7|chr7 (42050275-42050435) | |
| 395-555, gnl|monDom2|scaffold_625 (12345-12525) | |
| 395-555, gnl|oryCun1|scaffold_141964 (3124-2956) | |
| 395-555, gnl|panTro1|chr20 (50956172-50956355) | |
| 395-555, gnl|rheMac2|chr19 (54676148-54676331) | |
| 395-555, gnl|rn3|chr1 (96427784-96427605) | |
| 395-555, gnl|tetNig1|chrUn_random (38272503-38272338) | |
| 395-555, gnl|xenTro1|scaffold_70 (1648773-1648604) | |
| 804-1240, gnl|bosTau2|chr18 (50415747-50416194) | |
| 804-1240, gnl|Hg17|chr19 (53578401-53577983) | |
| 804-1240, gnl|Mm7|chr7 (42059206-42059604) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-296, gnl|bosTau2|chr18 (50408476-50408776) | |
| 1-296, gnl|Hg17|chr19 (53586636-53586336) | |
| 1-296, gnl|Mm7|chr7 (42049041-42049336) | |
| 395-555, gnl|bosTau2|chr18 (50409825-50409985) | |
| 395-555, gnl|canFam2|chr1 (110747994-110747811) | |
| 395-555, gnl|danRer3|chrNA (90139359-90139525) | |
| 395-555, gnl|dasNov1|scaffold_22712 (5040-4857) | |
| 395-555, gnl|echTel1|scaffold_294780 (5028-4849) | |
| 395-555, gnl|fr1|chrUn (56138471-56138289) | |
| 395-555, gnl|galGal2|chr1 (47624720-47624896) | |
| 395-555, gnl|hg17|chr19 (53584617-53584800) | |
| 395-555, gnl|Hg17|chr19 (53584782-53584622) | |
| 395-555, gnl|loxAfr1|scaffold_8774 (28172-27992) | |
| 395-555, gnl|mm7|chr7 (42050442-42050263) | |
| 395-555, gnl|Mm7|chr7 (42050275-42050435) | |
| 395-555, gnl|monDom2|scaffold_625 (12345-12525) | |
| 395-555, gnl|oryCun1|scaffold_141964 (3124-2956) | |
| 395-555, gnl|panTro1|chr20 (50956172-50956355) | |
| 395-555, gnl|rheMac2|chr19 (54676148-54676331) | |
| 395-555, gnl|rn3|chr1 (96427784-96427605) | |
| 395-555, gnl|tetNig1|chrUn_random (38272503-38272338) | |
| 395-555, gnl|xenTro1|scaffold_70 (1648773-1648604) | |
| 804-1240, gnl|bosTau2|chr18 (50415747-50416194) | |
| 804-1240, gnl|Hg17|chr19 (53578401-53577983) | |
| 804-1240, gnl|Mm7|chr7 (42059206-42059604) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| jej (0.593531) | |
| ece (0.45861) | |
| mcp (0.341297) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| jca (0.22792) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nco (0.161734) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.593531) | |
| ece (0.45861) | |
| mcp (0.341297) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| jca (0.22792) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nco (0.161734) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |