Non-Coding RNA Search

Ss1.1-Tra1-TCH01A080011.5

Sequence:


               
               CGCCGACGCCATGAACAGCGTAGGGGAGGGTTGCACGGACATGAAGCGCGAGTACGACCA
GTGCTTCAATCGTTGGTTTGCCGAGAAGTTCCTCAAGGGGGAGGGCTCCGGTGACCCGTG
CACTGACCTCTTCAAACGCTACCAGCAATGTGTTCAGAAAGCAATAAAGGAGAAGGAAAT
TCCCATTGAAGGACTGGAGTTCATGGGCCATGGCAAAGAAAAGCCTGAAAGCTCTTCTTG
ACCTTGACAGTCACCTTGAAAATGGACTCCTCAAATCGGGAAATTGAAGACCCTGGATTG
TGTCAATTAAAGTGATGAAGATAGCGGATCTATTTGATGAGTTTAGGAGGGAGGAGTTTC
CTTCCTGATATTTTTCTTTCACTTGTAAAAGATGATGAGCCATCACTCTGCTTAGATTTC
TGGCTTTGGCATCTCACCAGGAACTCGTGTGCTAAATGATGGGATTATTTGGGATTATGG
TTGCAATACCTGTCTGGGATCAGTTTTAAATATATCTCGTATGTAAATGTAGTTAAGATT
GTCGAGATGATCATGGTTTCCTGACCTCTTGAGTTATGCTGCAAAGAACTTTATATATGT
ACACCGTACTGGGGTAATTTTTCATGGAAGCAACTTGTTATAATCTCCTTTCTCTCAGGG
AGCTGATGCTCTGGAAAGGGTTCCCAGGAGTTTTATTTTTGGTATAATAATTTAACTGAA
GATTGCTGGTGGGCTGGGTTATCAAAGAAGAAGCCAGCTTTTAACAGTCCCCTGCCTTAA
TAAGAGGTGTCAGATCTCCTGTTAAGATGTGAAAGCTTCAGAATGCTGCTGTGAACACCA
TTTCAGAGCCCATGGTATGGTTCAGGAATTAAGATCCTTGGAGAAGCTATGGAGGGAGAT
CCTAAATCACAAAGCTTTGCTGTTGACAGCTTTCAACTTAAATCTGTAAATCTGTGTATT
AAGTCAACCTGTGTATCAAAAATGCCAAAATGCTGCATCTGGTTAAGTGGAGGAAGAAAA
GTTTGCTTTATCTGCCTTGTTTACTCACCCTGCCCTGTAATGCCTGTAATCATGAAGATG
GAATAAATTGTAATATTCGTTTCTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGACGCCATGAACAGCGTAGGGGAGGGTTGCACGGACATGAAGCGCGAGTACGACCA
GTGCTTCAATCGTTGGTTTGCCGAGAAGTTCCTCAAGGGGGAGGGCTCCGGTGACCCGTG
CACTGACCTCTTCAAACGCTACCAGCAATGTGTTCAGAAAGCAATAAAGGAGAAGGAAAT
TCCCATTGAAGGACTGGAGTTCATGGGCCATGGCAAAGAAAAGCCTGAAAGCTCTTCTTG
ACCTTGACAGTCACCTTGAAAATGGACTCCTCAAATCGGGAAATTGAAGACCCTGGATTG
TGTCAATTAAAGTGATGAAGATAGCGGATCTATTTGATGAGTTTAGGAGGGAGGAGTTTC
CTTCCTGATATTTTTCTTTCACTTGTAAAAGATGATGAGCCATCACTCTGCTTAGATTTC
TGGCTTTGGCATCTCACCAGGAACTCGTGTGCTAAATGATGGGATTATTTGGGATTATGG
TTGCAATACCTGTCTGGGATCAGTTTTAAATATATCTCGTATGTAAATGTAGTTAAGATT
GTCGAGATGATCATGGTTTCCTGACCTCTTGAGTTATGCTGCAAAGAACTTTATATATGT
ACACCGTACTGGGGTAATTTTTCATGGAAGCAACTTGTTATAATCTCCTTTCTCTCAGGG
AGCTGATGCTCTGGAAAGGGTTCCCAGGAGTTTTATTTTTGGTATAATAATTTAACTGAA
GATTGCTGGTGGGCTGGGTTATCAAAGAAGAAGCCAGCTTTTAACAGTCCCCTGCCTTAA
TAAGAGGTGTCAGATCTCCTGTTAAGATGTGAAAGCTTCAGAATGCTGCTGTGAACACCA
TTTCAGAGCCCATGGTATGGTTCAGGAATTAAGATCCTTGGAGAAGCTATGGAGGGAGAT
CCTAAATCACAAAGCTTTGCTGTTGACAGCTTTCAACTTAAATCTGTAAATCTGTGTATT
AAGTCAACCTGTGTATCAAAAATGCCAAAATGCTGCATCTGGTTAAGTGGAGGAAGAAAA
GTTTGCTTTATCTGCCTTGTTTACTCACCCTGCCCTGTAATGCCTGTAATCATGAAGATG
GAATAAATTGTAATATTCGTTTCTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q66VF8_GECJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q66VF8_GECJA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-687, gnl|bosTau2|chr12 (31229532-31230174)
               

               
               3-687, gnl|Hg17|chr12 (119346924-119344943)
               

               
               3-687, gnl|Mm7|chr5 (114562097-114563979)
               


               
               689-1114, gnl|bosTau2|chr12 (31230206-31230590)
               

               
               689-1114, gnl|Hg17|chr12 (119344911-119344497)
               

               
               689-1114, gnl|Mm7|chr5 (114564011-114564381)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-687, gnl|bosTau2|chr12 (31229532-31230174)
               

               
               3-687, gnl|Hg17|chr12 (119346924-119344943)
               

               
               3-687, gnl|Mm7|chr5 (114562097-114563979)
               


               
               689-1114, gnl|bosTau2|chr12 (31230206-31230590)
               

               
               689-1114, gnl|Hg17|chr12 (119344911-119344497)
               

               
               689-1114, gnl|Mm7|chr5 (114564011-114564381)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               cmu (0.55918)
               

               
               pro (0.512033)
               

               
               col (0.390016)
               

               
               ldo (0.38801)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               ste (0.270416)
               

               
               ese (0.253004)
               

               
               jca (0.22792)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               pro (0.512033)
               

               
               col (0.390016)
               

               
               ldo (0.38801)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               ste (0.270416)
               

               
               ese (0.253004)
               

               
               jca (0.22792)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	3-687, gnl\|bosTau2\|chr12 (31229532-31230174)
	3-687, gnl\|Hg17\|chr12 (119346924-119344943)
	3-687, gnl\|Mm7\|chr5 (114562097-114563979)

	689-1114, gnl\|bosTau2\|chr12 (31230206-31230590)
	689-1114, gnl\|Hg17\|chr12 (119344911-119344497)
	689-1114, gnl\|Mm7\|chr5 (114564011-114564381)

	cmu (0.55918)
	pro (0.512033)
	col (0.390016)
	ldo (0.38801)
	nep (0.36785)
	cut (0.339847)
	cki (0.330469)
	sme (0.305437)
	lun (0.300978)
	ste (0.270416)
	ese (0.253004)
	jca (0.22792)
	mgm (0.180343)
	fbs (0.175346)
	duo (0.172801)
	tbr (0.154178)
	cli (0.152812)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	cst (0.140036)
	ssp (0.13552)
	lyg (0.133103)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)
	cbl (0.114797)