Non-Coding RNA Search

Ss1.1-Tra1-TCH01A080049.5

Sequence:


               
               TCTGAAGCCTTTCCTAGGACCAGCCCAACCAAGCTCAGTCCTGGGAGGGTTTTCCAGGTT
GATGGTCGGTCTGCAGAGGGATCCTGCGAAGCCATCAGTAGTTGCCCCGGGGAGGACCAG
GTGCTGCCAGGCAAGGCCATGGCCCCTCTATGGCTCCTATGGATGTGGCTGCTGGTCACA
GGGACCCAAGGCGTGAAAGACGGTGACATGCGGCTGGCTGGTGGGGAAGCTGACAATGAG
GGCCGCGTAGAGATCTTCTACAGCGGCCAGTGGGGGACGGTGTGTGACAGCTTGTGGGAC
CTGACAGATGCCAGCGTCGTCTGCCGGGCTTTGGGCTTCAGGAACGTCACCAAGGCTCTG
GGCGGAGCCGCCTTCGGGCCAGGAAGCGGGCCCATCATGCTGGATGAGGTGGAGTGCGAG
GGGACCGAGCTCTCGCTGGCCGACTGCAGGTCCCTGGGCTGGATGCAGAGTGACTGTGGA
CACAACGAGGACGCCAGCGTGATCTGCACCAAAGAAACCAGAGGCGTCCACACCCTTGAC
CTGTCGGGCGAGCTCCCCGAGGCCCTAGAGCGGATCTTTGAGAGCCAAACGGGCTGCGAC
CTGTTCATCCGGGTGAAGGCCAAGGAAGACGAGCTGGGCCTCTGCGCCCACAAGCTGATC
CTGTCCGCCAACCCCGAGGCCCACGGCCTGTGGAAGGAGCCGAGCAGCAGGGTCACCATG
GAGGTGGACGCCGAGTGCGTGCCTGTCGTCAGAGACTACATCAGGTACCTCTACTCCCGG
AGGGTAGATGTCTCTCTGGCGTCGGTCCAGTGCTTCCACCAGCTCGCCTCTGCCTACGGG
GCCCAGCAGCTGCAGAGCTTCTGCGCGCACCTCTTTGCCGTCCTCATCCCGCAGGACCGC
TCTTTCCGGGCGCCCCTGGACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAAGCCTTTCCTAGGACCAGCCCAACCAAGCTCAGTCCTGGGAGGGTTTTCCAGGTT
GATGGTCGGTCTGCAGAGGGATCCTGCGAAGCCATCAGTAGTTGCCCCGGGGAGGACCAG
GTGCTGCCAGGCAAGGCCATGGCCCCTCTATGGCTCCTATGGATGTGGCTGCTGGTCACA
GGGACCCAAGGCGTGAAAGACGGTGACATGCGGCTGGCTGGTGGGGAAGCTGACAATGAG
GGCCGCGTAGAGATCTTCTACAGCGGCCAGTGGGGGACGGTGTGTGACAGCTTGTGGGAC
CTGACAGATGCCAGCGTCGTCTGCCGGGCTTTGGGCTTCAGGAACGTCACCAAGGCTCTG
GGCGGAGCCGCCTTCGGGCCAGGAAGCGGGCCCATCATGCTGGATGAGGTGGAGTGCGAG
GGGACCGAGCTCTCGCTGGCCGACTGCAGGTCCCTGGGCTGGATGCAGAGTGACTGTGGA
CACAACGAGGACGCCAGCGTGATCTGCACCAAAGAAACCAGAGGCGTCCACACCCTTGAC
CTGTCGGGCGAGCTCCCCGAGGCCCTAGAGCGGATCTTTGAGAGCCAAACGGGCTGCGAC
CTGTTCATCCGGGTGAAGGCCAAGGAAGACGAGCTGGGCCTCTGCGCCCACAAGCTGATC
CTGTCCGCCAACCCCGAGGCCCACGGCCTGTGGAAGGAGCCGAGCAGCAGGGTCACCATG
GAGGTGGACGCCGAGTGCGTGCCTGTCGTCAGAGACTACATCAGGTACCTCTACTCCCGG
AGGGTAGATGTCTCTCTGGCGTCGGTCCAGTGCTTCCACCAGCTCGCCTCTGCCTACGGG
GCCCAGCAGCTGCAGAGCTTCTGCGCGCACCTCTTTGCCGTCCTCATCCCGCAGGACCGC
TCTTTCCGGGCGCCCCTGGACTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|5107533|pdb|1BY2|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|5107533|pdb|1BY2|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               185-383, gnl|bosTau2|chr19 (46234693-46234494)
               

               
               185-383, gnl|Hg17|chr17 (74483839-74483641)
               

               
               185-383, gnl|Mm7|chr11 (118507620-118507424)
               


               
               509-766, gnl|bosTau2|chr19 (46232009-46231749)
               

               
               509-766, gnl|Hg17|chr17 (74480905-74480645)
               

               
               509-766, gnl|Mm7|chr11 (118505897-118505634)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-383, gnl|bosTau2|chr19 (46234693-46234494)
               

               
               185-383, gnl|Hg17|chr17 (74483839-74483641)
               

               
               185-383, gnl|Mm7|chr11 (118507620-118507424)
               


               
               509-766, gnl|bosTau2|chr19 (46232009-46231749)
               

               
               509-766, gnl|Hg17|chr17 (74480905-74480645)
               

               
               509-766, gnl|Mm7|chr11 (118505897-118505634)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               nmm (0.132802)

	185-383, gnl\|bosTau2\|chr19 (46234693-46234494)
	185-383, gnl\|Hg17\|chr17 (74483839-74483641)
	185-383, gnl\|Mm7\|chr11 (118507620-118507424)

	509-766, gnl\|bosTau2\|chr19 (46232009-46231749)
	509-766, gnl\|Hg17\|chr17 (74480905-74480645)
	509-766, gnl\|Mm7\|chr11 (118505897-118505634)