Ss1.1-Tra1-TCH01A090009.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCTGGAGCGGTGGCGTTTGGAGGAGACGCGAAACTGGATGGCTTCTACAGGGAGCCAG GCCTCGGATATAGACAAGATTTTGGGATTCTTCAGTGATGGCGCACCCCCCACCAAAAAG CCCAGGAAGCTGCTCCCAAGCCTGAAAACTAAGAAGCCTCGGGAGCTTGTGCTGGTGATT GGAACAGGCATCAGTGCTGCGGTCGCACCCCAGGTCCCAGCCCTGAAATCCTGGAAGGGG TTGATTCAGGCCTTACTGGATGCTGCCATTGACTTTGATCTGCTAGAAGATGAGGAGAGC AAAAAATTTCAGAAATGTCTCCATGAAGACAAGAACCTTGTCCATGTTGCTCATGACCTT ATCCAGAAACTCTCTCCTCGAACTAGTAATGTGCGATCCACATTTTTCAAGGACTGTTTA TATGAAGTATTTGATGACTTGGAGTCAAAGATGGAAGATTCTGGAAAACAGCTACTTCAG TCAGTTCTCCACCTGATGGAAAATGGAGCCCTGGTATTAACTACGAACTTTGACAATCTC CTGGAATTGTATGCAGCAGACCAGGGAAAACAACTTGAATCCCTTGACCTCACTGATGAA AAGAAGGTCCTGGAGTGGGCTCAGGAGAAGAGGAAGCTGAGCGTCTTACACATCCATGGG GTCTACACCAACCCTAGTGGCATCGTCCTTCATCCGGCTGGGTATCAGAATGTGCTCAGG AACACTGAAGTTATGAGAGAGATTCAGAAACTCTATGAAAACAAGTCATTCCTTTTCCTG GGTTGCGGCTGGACAGTGGATGACACCACTTTCCAAGCCCTTTTTCTGGAGGCTGTCAAG CATAAATCTGACCTAGAACATTTCATGCTGGTTCGGAGAGGAGATGTGGATGAGTTCAAG AAGCTTCGAGAAAACATGCTGGACAAAGGGATTAAGGTCATCTCCTATGGAAATGAATAT GCCGACCTTCCAGAATATTTCAGGCGGCTGACCTGTGAGATCTCCACAAGGGGAAGATTA GGGATGGTGAGAGAAGGTCAGCTCAATGGCTCGTCTACAGCACACAGTGAGATAAGAGAC TGTAGTACATGAGAGGGCTAGAGGAATCCCCAGCCTTAGACCAAGCGGAAAGGGCCTACC ATGGACAATTTCTAACAAGTAAACTTACAAGCTCCTCCAAGTACCAAAACCCAGAGGTTG AAGGTTGGGGTTAGAATTGGGGGTATTCCAACTTAACTTCATGCCAGCTGGTTCTCGATA ACTCTGCGGCCTGTTCCAGTTCAAGAAAACTCAAGTGATAACAGGACCCAAGTGCAGCCC CCACCCCACCGCCAGGCTGGATGTGCCTGTGTCCACAGCAGACTGATGGGACATCTCCAC TGACAGAGGCCGCAGCTCTTCATGAAGGACTTGGGATCTAGATGCCGCGGACCTGCCGTG GCCCTTGTTGCAGTTTTGTACTCTACACTTGGTTTTTCAATTAAGCTTAATGGCTTTTTT AAAACATGACTTGAAGCTCTAGTTTTCTAGATCTTTTACAGTGTACAGTATTTTACATAA CTGAGCTGTATTAAAACCTTGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCTGGAGCGGTGGCGTTTGGAGGAGACGCGAAACTGGATGGCTTCTACAGGGAGCCAG GCCTCGGATATAGACAAGATTTTGGGATTCTTCAGTGATGGCGCACCCCCCACCAAAAAG CCCAGGAAGCTGCTCCCAAGCCTGAAAACTAAGAAGCCTCGGGAGCTTGTGCTGGTGATT GGAACAGGCATCAGTGCTGCGGTCGCACCCCAGGTCCCAGCCCTGAAATCCTGGAAGGGG TTGATTCAGGCCTTACTGGATGCTGCCATTGACTTTGATCTGCTAGAAGATGAGGAGAGC AAAAAATTTCAGAAATGTCTCCATGAAGACAAGAACCTTGTCCATGTTGCTCATGACCTT ATCCAGAAACTCTCTCCTCGAACTAGTAATGTGCGATCCACATTTTTCAAGGACTGTTTA TATGAAGTATTTGATGACTTGGAGTCAAAGATGGAAGATTCTGGAAAACAGCTACTTCAG TCAGTTCTCCACCTGATGGAAAATGGAGCCCTGGTATTAACTACGAACTTTGACAATCTC CTGGAATTGTATGCAGCAGACCAGGGAAAACAACTTGAATCCCTTGACCTCACTGATGAA AAGAAGGTCCTGGAGTGGGCTCAGGAGAAGAGGAAGCTGAGCGTCTTACACATCCATGGG GTCTACACCAACCCTAGTGGCATCGTCCTTCATCCGGCTGGGTATCAGAATGTGCTCAGG AACACTGAAGTTATGAGAGAGATTCAGAAACTCTATGAAAACAAGTCATTCCTTTTCCTG GGTTGCGGCTGGACAGTGGATGACACCACTTTCCAAGCCCTTTTTCTGGAGGCTGTCAAG CATAAATCTGACCTAGAACATTTCATGCTGGTTCGGAGAGGAGATGTGGATGAGTTCAAG AAGCTTCGAGAAAACATGCTGGACAAAGGGATTAAGGTCATCTCCTATGGAAATGAATAT GCCGACCTTCCAGAATATTTCAGGCGGCTGACCTGTGAGATCTCCACAAGGGGAAGATTA GGGATGGTGAGAGAAGGTCAGCTCAATGGCTCGTCTACAGCACACAGTGAGATAAGAGAC TGTAGTACATGAGAGGGCTAGAGGAATCCCCAGCCTTAGACCAAGCGGAAAGGGCCTACC ATGGACAATTTCTAACAAGTAAACTTACAAGCTCCTCCAAGTACCAAAACCCAGAGGTTG AAGGTTGGGGTTAGAATTGGGGGTATTCCAACTTAACTTCATGCCAGCTGGTTCTCGATA ACTCTGCGGCCTGTTCCAGTTCAAGAAAACTCAAGTGATAACAGGACCCAAGTGCAGCCC CCACCCCACCGCCAGGCTGGATGTGCCTGTGTCCACAGCAGACTGATGGGACATCTCCAC TGACAGAGGCCGCAGCTCTTCATGAAGGACTTGGGATCTAGATGCCGCGGACCTGCCGTG GCCCTTGTTGCAGTTTTGTACTCTACACTTGGTTTTTCAATTAAGCTTAATGGCTTTTTT AAAACATGACTTGAAGCTCTAGTTTTCTAGATCTTTTACAGTGTACAGTATTTTACATAA CTGAGCTGTATTAAAACCTTGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 735-1584, - strand, RNAz p=0.980341 | |
| 912-1029, + strand, RNAz p=0.895216 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 735-1584, - strand, RNAz p=0.980341 | |
| 912-1029, + strand, RNAz p=0.895216 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 123-377, gnl|bosTau2|chr29 (21594397-21594143) | |
| 123-377, gnl|canFam2|chr5 (11275200-11274933) | |
| 123-377, gnl|danRer3|chr18 (47121200-47120934) | |
| 123-377, gnl|dasNov1|scaffold_119838 (3778-4045) | |
| 123-377, gnl|echTel1|scaffold_276309 (5623-5356) | |
| 123-377, gnl|fr1|chrUn (160910055-160910317) | |
| 123-377, gnl|galGal2|chr24 (407286-407019) | |
| 123-377, gnl|hg17|chr11 (125615889-125616156) | |
| 123-377, gnl|Hg17|chr11 (125615894-125616148) | |
| 123-377, gnl|loxAfr1|scaffold_30069 (9055-9322) | |
| 123-377, gnl|mm7|chr9 (35130293-35130028) | |
| 123-377, gnl|Mm7|chr9 (35130288-35130034) | |
| 123-377, gnl|monDom2|scaffold_15 (13166239-13166506) | |
| 123-377, gnl|oryCun1|scaffold_213557 (10619-10353) | |
| 123-377, gnl|panTro1|chr9 (127696703-127696970) | |
| 123-377, gnl|rheMac2|chr14 (124383941-124384208) | |
| 123-377, gnl|rn3|chr8 (35024086-35023821) | |
| 123-377, gnl|tetNig1|chrUn_random (14339833-14339571) | |
| 123-377, gnl|xenTro1|scaffold_709 (349556-349289) | |
| 379-608, gnl|bosTau2|chr29 (21585147-21584918) | |
| 379-608, gnl|canFam2|chr5 (11266508-11266242) | |
| 379-608, gnl|danRer3|chr18 (47113065-47112808) | |
| 379-608, gnl|dasNov1|scaffold_13972 (15251-15517) | |
| 379-608, gnl|echTel1|scaffold_321716 (74404-74138) | |
| 379-608, gnl|fr1|chrUn (160914384-160914655) | |
| 379-608, gnl|galGal2|chr24 (406462-406204) | |
| 379-608, gnl|hg17|chr11 (125625582-125625848) | |
| 379-608, gnl|Hg17|chr11 (125625611-125625840) | |
| 379-608, gnl|loxAfr1|scaffold_30069 (19688-19954) | |
| 379-608, gnl|mm7|chr9 (35122232-35121958) | |
| 379-608, gnl|Mm7|chr9 (35122193-35121964) | |
| 379-608, gnl|monDom2|scaffold_15 (13177757-13178032) | |
| 379-608, gnl|oryCun1|scaffold_213557 (3647-3381) | |
| 379-608, gnl|panTro1|chr9 (127708885-127709151) | |
| 379-608, gnl|rheMac2|chr14 (124395103-124395369) | |
| 379-608, gnl|rn3|chr8 (35016349-35016066) | |
| 379-608, gnl|tetNig1|chrUn_random (14335649-14335384) | |
| 379-608, gnl|xenTro1|scaffold_709 (345730-345464) | |
| 735-1029, gnl|bosTau2|chr29 (21580654-21580360) | |
| 735-1029, gnl|Hg17|chr11 (125631671-125631965) | |
| 735-1029, gnl|Mm7|chr9 (35116468-35116177) | |
| 1077-1584, gnl|bosTau2|chr29 (21575022-21574531) | |
| 1077-1584, gnl|Hg17|chr11 (125637223-125637746) | |
| 1077-1584, gnl|Mm7|chr9 (35112551-35112048) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-377, gnl|bosTau2|chr29 (21594397-21594143) | |
| 123-377, gnl|canFam2|chr5 (11275200-11274933) | |
| 123-377, gnl|danRer3|chr18 (47121200-47120934) | |
| 123-377, gnl|dasNov1|scaffold_119838 (3778-4045) | |
| 123-377, gnl|echTel1|scaffold_276309 (5623-5356) | |
| 123-377, gnl|fr1|chrUn (160910055-160910317) | |
| 123-377, gnl|galGal2|chr24 (407286-407019) | |
| 123-377, gnl|hg17|chr11 (125615889-125616156) | |
| 123-377, gnl|Hg17|chr11 (125615894-125616148) | |
| 123-377, gnl|loxAfr1|scaffold_30069 (9055-9322) | |
| 123-377, gnl|mm7|chr9 (35130293-35130028) | |
| 123-377, gnl|Mm7|chr9 (35130288-35130034) | |
| 123-377, gnl|monDom2|scaffold_15 (13166239-13166506) | |
| 123-377, gnl|oryCun1|scaffold_213557 (10619-10353) | |
| 123-377, gnl|panTro1|chr9 (127696703-127696970) | |
| 123-377, gnl|rheMac2|chr14 (124383941-124384208) | |
| 123-377, gnl|rn3|chr8 (35024086-35023821) | |
| 123-377, gnl|tetNig1|chrUn_random (14339833-14339571) | |
| 123-377, gnl|xenTro1|scaffold_709 (349556-349289) | |
| 379-608, gnl|bosTau2|chr29 (21585147-21584918) | |
| 379-608, gnl|canFam2|chr5 (11266508-11266242) | |
| 379-608, gnl|danRer3|chr18 (47113065-47112808) | |
| 379-608, gnl|dasNov1|scaffold_13972 (15251-15517) | |
| 379-608, gnl|echTel1|scaffold_321716 (74404-74138) | |
| 379-608, gnl|fr1|chrUn (160914384-160914655) | |
| 379-608, gnl|galGal2|chr24 (406462-406204) | |
| 379-608, gnl|hg17|chr11 (125625582-125625848) | |
| 379-608, gnl|Hg17|chr11 (125625611-125625840) | |
| 379-608, gnl|loxAfr1|scaffold_30069 (19688-19954) | |
| 379-608, gnl|mm7|chr9 (35122232-35121958) | |
| 379-608, gnl|Mm7|chr9 (35122193-35121964) | |
| 379-608, gnl|monDom2|scaffold_15 (13177757-13178032) | |
| 379-608, gnl|oryCun1|scaffold_213557 (3647-3381) | |
| 379-608, gnl|panTro1|chr9 (127708885-127709151) | |
| 379-608, gnl|rheMac2|chr14 (124395103-124395369) | |
| 379-608, gnl|rn3|chr8 (35016349-35016066) | |
| 379-608, gnl|tetNig1|chrUn_random (14335649-14335384) | |
| 379-608, gnl|xenTro1|scaffold_709 (345730-345464) | |
| 735-1029, gnl|bosTau2|chr29 (21580654-21580360) | |
| 735-1029, gnl|Hg17|chr11 (125631671-125631965) | |
| 735-1029, gnl|Mm7|chr9 (35116468-35116177) | |
| 1077-1584, gnl|bosTau2|chr29 (21575022-21574531) | |
| 1077-1584, gnl|Hg17|chr11 (125637223-125637746) | |
| 1077-1584, gnl|Mm7|chr9 (35112551-35112048) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| elu (0.385356) | |
| eye (0.341006) | |
| col (0.195008) | |
| rec (0.17307) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| med (0.116252) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| eye (0.341006) | |
| col (0.195008) | |
| rec (0.17307) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| med (0.116252) | |
| cbl (0.114797) | |
| eje (0.0988338) |