Ss1.1-Tra1-TCH01A090044.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTTTGCGGTGTCAGGGAGCGGACCAGAGCCCAGCCCTGCCCCGGACACAGATGGGACC ATGAGCTCCGGTTACAGCTTCAGCCAGACCCTCTCAGGCTCCCTCCACGGAGCCGCAGGC GGCTGGGGCTGGCCAGGGAGCTTCCCCTGGGCCCCCAGTGTCCACGGGGGCGCAGGGGGT GTCCGCATCTCCCTTTCCTTCTCCTCACCACGGAGCTGCCCACCCCCAGGCGGGTCTTGG GGGTCTGGAAGGGGCAGCTCTCTCCTAGGCGGAAATGGGAAGGAGACCATGCGGAACCTC AACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGAGGCCAACGTGAAA CTGGAAAGTTGCATCCTGAAGTGGCATGAGCAGAGAGATCCGGGCAGCAAGCAAGATTAC TCCCAGTATGAGGAAAGCATCAGCCGCCTACAGGAGCAGATAGCAGATGGCAAGATGACC AACGCTCAGATCATTCTTCTCATTGACAACGCGAGGATGGCAGTGGATGACTTCAGCCTT AAGTATGAAAATGAACACTCCTTAAAGAAAGACTTGGAAATTGAAGTTGAGGGCCTCCGA AAGAACTTGGATGATCTGACCATCATCACAACGGACCTGGAACAGGAGGTCGAGGGGATG AGGAAAGAGCTCATCCTCATGAAGAAGCACCATGAGCAGGCAATGGAGGAACATCACATG CCAAATGACTTCAAGGTCAACGTGAAGGTGGATGCAACCCCGGGAGAAGATCTGATTAAG GTCCTGGAGGATATGAGGCAGGAATACGAGCTTCTAATTAAGAAGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTTTGCGGTGTCAGGGAGCGGACCAGAGCCCAGCCCTGCCCCGGACACAGATGGGACC ATGAGCTCCGGTTACAGCTTCAGCCAGACCCTCTCAGGCTCCCTCCACGGAGCCGCAGGC GGCTGGGGCTGGCCAGGGAGCTTCCCCTGGGCCCCCAGTGTCCACGGGGGCGCAGGGGGT GTCCGCATCTCCCTTTCCTTCTCCTCACCACGGAGCTGCCCACCCCCAGGCGGGTCTTGG GGGTCTGGAAGGGGCAGCTCTCTCCTAGGCGGAAATGGGAAGGAGACCATGCGGAACCTC AACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGAGGCCAACGTGAAA CTGGAAAGTTGCATCCTGAAGTGGCATGAGCAGAGAGATCCGGGCAGCAAGCAAGATTAC TCCCAGTATGAGGAAAGCATCAGCCGCCTACAGGAGCAGATAGCAGATGGCAAGATGACC AACGCTCAGATCATTCTTCTCATTGACAACGCGAGGATGGCAGTGGATGACTTCAGCCTT AAGTATGAAAATGAACACTCCTTAAAGAAAGACTTGGAAATTGAAGTTGAGGGCCTCCGA AAGAACTTGGATGATCTGACCATCATCACAACGGACCTGGAACAGGAGGTCGAGGGGATG AGGAAAGAGCTCATCCTCATGAAGAAGCACCATGAGCAGGCAATGGAGGAACATCACATG CCAAATGACTTCAAGGTCAACGTGAAGGTGGATGCAACCCCGGGAGAAGATCTGATTAAG GTCCTGGAGGATATGAGGCAGGAATACGAGCTTCTAATTAAGAAGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 80-302, - strand, RNAz p=0.994868 | |
| 343-462, - strand, RNAz p=0.980203 | |
| 345-462, - strand, RNAz p=0.889799 | |
| 583-700, + strand, RNAz p=0.745162 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-302, - strand, RNAz p=0.994868 | |
| 343-462, - strand, RNAz p=0.980203 | |
| 345-462, - strand, RNAz p=0.889799 | |
| 583-700, + strand, RNAz p=0.745162 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-462, gnl|bosTau2|chr19 (33695493-33695951) | |
| 1-462, gnl|canFam2|chr9 (25080454-25080142) | |
| 1-462, gnl|danRer3|chr19 (1218851-1219193) | |
| 1-462, gnl|dasNov1|scaffold_17657 (87499-87811) | |
| 1-462, gnl|echTel1|scaffold_313865 (39237-39564) | |
| 1-462, gnl|fr1|chrUn (253379363-253379067) | |
| 1-462, gnl|galGal2|chr27_random (603814-603487) | |
| 1-462, gnl|hg17|chr17 (36345982-36346294) | |
| 1-462, gnl|Hg17|chr17 (36346441-36345983) | |
| 1-462, gnl|loxAfr1|scaffold_187688 (316-4) | |
| 1-462, gnl|mm7|chr11 (99601704-99602016) | |
| 1-462, gnl|Mm7|chr11 (99602158-99601705) | |
| 1-462, gnl|monDom2|scaffold_18 (50506202-50506520) | |
| 1-462, gnl|oryCun1|scaffold_173998 (67730-68042) | |
| 1-462, gnl|panTro1|chr19_random (18223022-18223334) | |
| 1-462, gnl|rheMac2|chr16 (51053028-51053340) | |
| 1-462, gnl|rn3|chr10 (88450762-88451074) | |
| 1-462, gnl|tetNig1|chr18 (941415-941713) | |
| 1-462, gnl|xenTro1|scaffold_394 (259661-259976) | |
| 531-700, gnl|bosTau2|chr19 (33705268-33705438) | |
| 531-700, gnl|canFam2|chr9 (25088591-25088428) | |
| 531-700, gnl|danRer3|chr19 (1218336-1218477) | |
| 531-700, gnl|dasNov1|scaffold_97673 (9773-9936) | |
| 531-700, gnl|echTel1|scaffold_313865 (32655-32818) | |
| 531-700, gnl|fr1|chrUn (127667703-127667584) | |
| 531-700, gnl|galGal2|chr27_random (608656-608507) | |
| 531-700, gnl|hg17|chr17 (36339699-36339862) | |
| 531-700, gnl|Hg17|chr17 (36339887-36339717) | |
| 531-700, gnl|loxAfr1|scaffold_16606 (7440-7294) | |
| 531-700, gnl|mm7|chr11 (99594714-99594876) | |
| 531-700, gnl|Mm7|chr11 (99594902-99594731) | |
| 531-700, gnl|monDom2|scaffold_18 (50486936-50487099) | |
| 531-700, gnl|oryCun1|scaffold_173998 (61856-62019) | |
| 531-700, gnl|panTro1|chr19_random (18216098-18216261) | |
| 531-700, gnl|rheMac2|chr16 (51046947-51047110) | |
| 531-700, gnl|rn3|chr10 (88443450-88443612) | |
| 531-700, gnl|tetNig1|chr18 (940828-940959) | |
| 531-700, gnl|xenTro1|scaffold_574 (96128-95983) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-462, gnl|bosTau2|chr19 (33695493-33695951) | |
| 1-462, gnl|canFam2|chr9 (25080454-25080142) | |
| 1-462, gnl|danRer3|chr19 (1218851-1219193) | |
| 1-462, gnl|dasNov1|scaffold_17657 (87499-87811) | |
| 1-462, gnl|echTel1|scaffold_313865 (39237-39564) | |
| 1-462, gnl|fr1|chrUn (253379363-253379067) | |
| 1-462, gnl|galGal2|chr27_random (603814-603487) | |
| 1-462, gnl|hg17|chr17 (36345982-36346294) | |
| 1-462, gnl|Hg17|chr17 (36346441-36345983) | |
| 1-462, gnl|loxAfr1|scaffold_187688 (316-4) | |
| 1-462, gnl|mm7|chr11 (99601704-99602016) | |
| 1-462, gnl|Mm7|chr11 (99602158-99601705) | |
| 1-462, gnl|monDom2|scaffold_18 (50506202-50506520) | |
| 1-462, gnl|oryCun1|scaffold_173998 (67730-68042) | |
| 1-462, gnl|panTro1|chr19_random (18223022-18223334) | |
| 1-462, gnl|rheMac2|chr16 (51053028-51053340) | |
| 1-462, gnl|rn3|chr10 (88450762-88451074) | |
| 1-462, gnl|tetNig1|chr18 (941415-941713) | |
| 1-462, gnl|xenTro1|scaffold_394 (259661-259976) | |
| 531-700, gnl|bosTau2|chr19 (33705268-33705438) | |
| 531-700, gnl|canFam2|chr9 (25088591-25088428) | |
| 531-700, gnl|danRer3|chr19 (1218336-1218477) | |
| 531-700, gnl|dasNov1|scaffold_97673 (9773-9936) | |
| 531-700, gnl|echTel1|scaffold_313865 (32655-32818) | |
| 531-700, gnl|fr1|chrUn (127667703-127667584) | |
| 531-700, gnl|galGal2|chr27_random (608656-608507) | |
| 531-700, gnl|hg17|chr17 (36339699-36339862) | |
| 531-700, gnl|Hg17|chr17 (36339887-36339717) | |
| 531-700, gnl|loxAfr1|scaffold_16606 (7440-7294) | |
| 531-700, gnl|mm7|chr11 (99594714-99594876) | |
| 531-700, gnl|Mm7|chr11 (99594902-99594731) | |
| 531-700, gnl|monDom2|scaffold_18 (50486936-50487099) | |
| 531-700, gnl|oryCun1|scaffold_173998 (61856-62019) | |
| 531-700, gnl|panTro1|chr19_random (18216098-18216261) | |
| 531-700, gnl|rheMac2|chr16 (51046947-51047110) | |
| 531-700, gnl|rn3|chr10 (88443450-88443612) | |
| 531-700, gnl|tetNig1|chr18 (940828-940959) | |
| 531-700, gnl|xenTro1|scaffold_574 (96128-95983) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.877501) | |
| mcp (0.170648) | |
| nmm (0.132802) |