Non-Coding RNA Search

Ss1.1-Tra1-TCH01A090080.5

Sequence:


               
               GGCAAGCCGGGGAGGTCTGGTCTCAGCTAACAGCTGTTCCCTCCCGGGATTCTGGACCGC
TGCCTTAGCGACCCAGGGGCCGAGCTCTGACCCCTCGGACCCAAAAGCCTGGCCCCCACT
TCTTCCTGGAGCTCTGTCTTCCAGCCCCCGGGCTCAAGCTCCCCAGCCCTCGGTTTCCAG
GACCCAGGCACCCCAGTTTCCCGCCTCCCGGATCCACGCGTCCGAGATCTGCGCCACCCG
GACCTAGCCTCTTGAAGACGGTCGTCGTCTGGAGCTTTTCGGAGCCAAGGACCCTAGGTC
GCTGGTTGAGAAACTCTTTCTTCCCAACCCTCAGGACCAGAAACCCCAGGGGCTCGCTCC
CACTTCCCAGCTTTCGAGCGCCAGACGCAAACGAAGAGCGGAGGAGCCCCAGCGCCCAGC
CTAGGGCATCTCAAACACTCACGCTTCCGAGAGCCAAGAACTTCAGCGCTGTGAACTCGC
AGCTCCAAGGAACCTTCCAAAGTTCCAGCCTCCAGGCTCTGTTAACTCCGTTCTAAGGAA
CGTCAGCGTCTTGGAAAGGAGCCCCAAGTGCTCCCAGCTTCCAGGCGTTAAGGAACCCCG
GGGCGTCCGTCATGGTGGCCGAGACGCCCAAGGCCGACCCCAAGGCGTTCGCGGCGGCGG
AGCCCACCGCCAACGGGGTCTCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGCCGGGGAGGTCTGGTCTCAGCTAACAGCTGTTCCCTCCCGGGATTCTGGACCGC
TGCCTTAGCGACCCAGGGGCCGAGCTCTGACCCCTCGGACCCAAAAGCCTGGCCCCCACT
TCTTCCTGGAGCTCTGTCTTCCAGCCCCCGGGCTCAAGCTCCCCAGCCCTCGGTTTCCAG
GACCCAGGCACCCCAGTTTCCCGCCTCCCGGATCCACGCGTCCGAGATCTGCGCCACCCG
GACCTAGCCTCTTGAAGACGGTCGTCGTCTGGAGCTTTTCGGAGCCAAGGACCCTAGGTC
GCTGGTTGAGAAACTCTTTCTTCCCAACCCTCAGGACCAGAAACCCCAGGGGCTCGCTCC
CACTTCCCAGCTTTCGAGCGCCAGACGCAAACGAAGAGCGGAGGAGCCCCAGCGCCCAGC
CTAGGGCATCTCAAACACTCACGCTTCCGAGAGCCAAGAACTTCAGCGCTGTGAACTCGC
AGCTCCAAGGAACCTTCCAAAGTTCCAGCCTCCAGGCTCTGTTAACTCCGTTCTAAGGAA
CGTCAGCGTCTTGGAAAGGAGCCCCAAGTGCTCCCAGCTTCCAGGCGTTAAGGAACCCCG
GGGCGTCCGTCATGGTGGCCGAGACGCCCAAGGCCGACCCCAAGGCGTTCGCGGCGGCGG
AGCCCACCGCCAACGGGGTCTCGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               39-234, - strand, RNAz p=0.985451
               

               
               460-576, + strand, RNAz p=0.942681

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-234, - strand, RNAz p=0.985451
               

               
               460-576, + strand, RNAz p=0.942681

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               86-245, - strand, RNAmicro p=0.999572

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               86-245, - strand, RNAmicro p=0.999572

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of BC000986, -
               

               
               3' of NM_005628, +

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC000986, -
               

               
               3' of NM_005628, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-683, gnl|bosTau2|chr18 (49676659-49677347)
               

               
               1-683, gnl|Hg17|chr19 (51983681-51982994)
               

               
               1-683, gnl|Mm7|chr7 (14545639-14546233)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-683, gnl|bosTau2|chr18 (49676659-49677347)
               

               
               1-683, gnl|Hg17|chr19 (51983681-51982994)
               

               
               1-683, gnl|Mm7|chr7 (14545639-14546233)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cty (0.10408)

	39-234, - strand, RNAz p=0.985451
	460-576, + strand, RNAz p=0.942681

	1-683, gnl\|bosTau2\|chr18 (49676659-49677347)
	1-683, gnl\|Hg17\|chr19 (51983681-51982994)
	1-683, gnl\|Mm7\|chr7 (14545639-14546233)