Ss1.1-Tra1-TCH01A100049.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCTAATTTTATGATGCATTCTGGGATCTCTCAAGCCTCAGAGTATGATGATCCCCCC GGCCTGAGGGAGAAGGCAGAGTATCTTCTGAGGGAATGGGTGAATCTCTACCATTCAGCA GCAGCTGGTCGTGACAGTACCAAAGCTTTCTCTGCGTTTGTTGGACAGATGCACCAGCAA GGAATCTTGAAGACTGATGACCTCATAACAAGGTTCTTTCGTCTGTGTACTGAAATGTGT GTTGAAATTAGTTACCGTGCTCAGGCAGAGCAGCAGCACAATCCTGCTGCTAATCCCACT ATGATCCGAGCCAAGTGCTATCATAACCTGGATGCCTTTGTCCGACTCATTGCACTGCTA GTGAAGCACTCAGGGGAGGCCACCAACACTGTCACAAAGATTAATCTGCTGAATAAGGTC CTTGGTATAGTAGTGGGAGTTCTCCTACAGGATCATGATGTTCGGCAAAGTGAATTTCAG CAGCTTCCCTACCATCGAATTTTTATTATGCTGCTCTTGGAACTCAATGCACCTGAGCAT GTATTGGAAACCATTAATTTTCAGACACTTACAGCTTTCTGCAACACATTCCACATCTTG AGGCCTACCAAAGCTCCTGGCTTTGTGTATGCTTGGCTTGAACTGATCTCCCATCGGATA TTTATTGCAAGAATGCTAGCACATACGCCACAGCAGAAGGGATGGCCTATGTACGCACAG CTACTGATTGATTTATTCAAATATTTAGCGCCTTTCCTTAGAAATGTGGAACTCACGAAA CCTATGCAAATCCTCTACAAGGGCACTTTAAGAGTGCTGCTGGTTCTTTTGCATGATTTC CCTGAGTTCCTTTGTGATTACCATTATGGATTCTGTGATGTGATCCCACCTAATTGTATC CAGCTAAGAAATCTGATCCTGAGTGCCTTCCCAAGAAACATGAGGCTCCCAGACCCGTTC ACTCCTAATCTGAAGGTGGATATGTTGAGTGAAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCTAATTTTATGATGCATTCTGGGATCTCTCAAGCCTCAGAGTATGATGATCCCCCC GGCCTGAGGGAGAAGGCAGAGTATCTTCTGAGGGAATGGGTGAATCTCTACCATTCAGCA GCAGCTGGTCGTGACAGTACCAAAGCTTTCTCTGCGTTTGTTGGACAGATGCACCAGCAA GGAATCTTGAAGACTGATGACCTCATAACAAGGTTCTTTCGTCTGTGTACTGAAATGTGT GTTGAAATTAGTTACCGTGCTCAGGCAGAGCAGCAGCACAATCCTGCTGCTAATCCCACT ATGATCCGAGCCAAGTGCTATCATAACCTGGATGCCTTTGTCCGACTCATTGCACTGCTA GTGAAGCACTCAGGGGAGGCCACCAACACTGTCACAAAGATTAATCTGCTGAATAAGGTC CTTGGTATAGTAGTGGGAGTTCTCCTACAGGATCATGATGTTCGGCAAAGTGAATTTCAG CAGCTTCCCTACCATCGAATTTTTATTATGCTGCTCTTGGAACTCAATGCACCTGAGCAT GTATTGGAAACCATTAATTTTCAGACACTTACAGCTTTCTGCAACACATTCCACATCTTG AGGCCTACCAAAGCTCCTGGCTTTGTGTATGCTTGGCTTGAACTGATCTCCCATCGGATA TTTATTGCAAGAATGCTAGCACATACGCCACAGCAGAAGGGATGGCCTATGTACGCACAG CTACTGATTGATTTATTCAAATATTTAGCGCCTTTCCTTAGAAATGTGGAACTCACGAAA CCTATGCAAATCCTCTACAAGGGCACTTTAAGAGTGCTGCTGGTTCTTTTGCATGATTTC CCTGAGTTCCTTTGTGATTACCATTATGGATTCTGTGATGTGATCCCACCTAATTGTATC CAGCTAAGAAATCTGATCCTGAGTGCCTTCCCAAGAAACATGAGGCTCCCAGACCCGTTC ACTCCTAATCTGAAGGTGGATATGTTGAGTGAAATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 247-366, - strand, RNAz p=0.683095 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 247-366, - strand, RNAz p=0.683095 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 167-420, gnl|bosTau2|chr18 (23213842-23213589) | |
| 167-420, gnl|canFam2|chr2 (61005103-61004773) | |
| 167-420, gnl|danRer3|chrUn (105303567-105303855) | |
| 167-420, gnl|dasNov1|scaffold_6683 (25633-25331) | |
| 167-420, gnl|echTel1|scaffold_294044 (36226-35935) | |
| 167-420, gnl|fr1|chrUn (279558164-279558440) | |
| 167-420, gnl|galGal2|chr11 (1349050-1349360) | |
| 167-420, gnl|hg17|chr16 (57125535-57125837) | |
| 167-420, gnl|Hg17|chr16 (57125802-57125549) | |
| 167-420, gnl|loxAfr1|scaffold_21799 (19207-18902) | |
| 167-420, gnl|mm7|chr8 (94319350-94319651) | |
| 167-420, gnl|Mm7|chr8 (94319617-94319364) | |
| 167-420, gnl|monDom2|scaffold_63 (8282544-8282837) | |
| 167-420, gnl|oryCun1|scaffold_204159 (60800-61094) | |
| 167-420, gnl|panTro1|chr18 (51244876-51245178) | |
| 167-420, gnl|rheMac2|chr20 (56889719-56890021) | |
| 167-420, gnl|rn3|chr19 (9798212-9797912) | |
| 167-420, gnl|tetNig1|chrUn_random (139872387-139872132) | |
| 167-420, gnl|xenTro1|scaffold_671 (666131-665817) | |
| 575-706, gnl|bosTau2|chr18 (23212302-23212171) | |
| 575-706, gnl|canFam2|chr2 (61006285-61006176) | |
| 575-706, gnl|danRer3|chrUn (105303026-105303126) | |
| 575-706, gnl|dasNov1|scaffold_6683 (27609-27500) | |
| 575-706, gnl|echTel1|scaffold_294044 (37505-37397) | |
| 575-706, gnl|fr1|chrUn (279557724-279557811) | |
| 575-706, gnl|galGal2|chr11 (1348240-1348349) | |
| 575-706, gnl|hg17|chr16 (57123338-57123447) | |
| 575-706, gnl|Hg17|chr16 (57123487-57123356) | |
| 575-706, gnl|loxAfr1|scaffold_21799 (20568-20459) | |
| 575-706, gnl|mm7|chr8 (94317544-94317653) | |
| 575-706, gnl|Mm7|chr8 (94317693-94317562) | |
| 575-706, gnl|monDom2|scaffold_63 (8281270-8281379) | |
| 575-706, gnl|oryCun1|scaffold_204159 (59043-59152) | |
| 575-706, gnl|panTro1|chr18 (51242677-51242786) | |
| 575-706, gnl|rheMac2|chr20 (56887497-56887606) | |
| 575-706, gnl|rn3|chr19 (9799900-9799791) | |
| 575-706, gnl|tetNig1|chrUn_random (139872856-139872771) | |
| 575-706, gnl|xenTro1|scaffold_671 (667163-667070) | |
| 800-977, gnl|bosTau2|chr18 (23209050-23208873) | |
| 800-977, gnl|canFam2|chr2 (61011288-61011098) | |
| 800-977, gnl|danRer3|chrUn (105302418-105302595) | |
| 800-977, gnl|dasNov1|scaffold_6683 (34812-34621) | |
| 800-977, gnl|echTel1|scaffold_294044 (41968-41777) | |
| 800-977, gnl|fr1|chrUn (279557272-279557449) | |
| 800-977, gnl|galGal2|chr11 (1347215-1347406) | |
| 800-977, gnl|hg17|chr16 (57119865-57120056) | |
| 800-977, gnl|Hg17|chr16 (57120055-57119878) | |
| 800-977, gnl|loxAfr1|scaffold_478 (199495-199304) | |
| 800-977, gnl|mm7|chr8 (94314954-94315145) | |
| 800-977, gnl|Mm7|chr8 (94315144-94314967) | |
| 800-977, gnl|monDom2|scaffold_63 (8278664-8278843) | |
| 800-977, gnl|oryCun1|scaffold_204159 (55027-55206) | |
| 800-977, gnl|panTro1|chr18 (51239207-51239398) | |
| 800-977, gnl|rheMac2|chr20 (56884084-56884275) | |
| 800-977, gnl|rn3|chr19 (9802368-9802161) | |
| 800-977, gnl|tetNig1|chrUn_random (139873279-139873099) | |
| 800-977, gnl|xenTro1|scaffold_671 (669149-668971) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 167-420, gnl|bosTau2|chr18 (23213842-23213589) | |
| 167-420, gnl|canFam2|chr2 (61005103-61004773) | |
| 167-420, gnl|danRer3|chrUn (105303567-105303855) | |
| 167-420, gnl|dasNov1|scaffold_6683 (25633-25331) | |
| 167-420, gnl|echTel1|scaffold_294044 (36226-35935) | |
| 167-420, gnl|fr1|chrUn (279558164-279558440) | |
| 167-420, gnl|galGal2|chr11 (1349050-1349360) | |
| 167-420, gnl|hg17|chr16 (57125535-57125837) | |
| 167-420, gnl|Hg17|chr16 (57125802-57125549) | |
| 167-420, gnl|loxAfr1|scaffold_21799 (19207-18902) | |
| 167-420, gnl|mm7|chr8 (94319350-94319651) | |
| 167-420, gnl|Mm7|chr8 (94319617-94319364) | |
| 167-420, gnl|monDom2|scaffold_63 (8282544-8282837) | |
| 167-420, gnl|oryCun1|scaffold_204159 (60800-61094) | |
| 167-420, gnl|panTro1|chr18 (51244876-51245178) | |
| 167-420, gnl|rheMac2|chr20 (56889719-56890021) | |
| 167-420, gnl|rn3|chr19 (9798212-9797912) | |
| 167-420, gnl|tetNig1|chrUn_random (139872387-139872132) | |
| 167-420, gnl|xenTro1|scaffold_671 (666131-665817) | |
| 575-706, gnl|bosTau2|chr18 (23212302-23212171) | |
| 575-706, gnl|canFam2|chr2 (61006285-61006176) | |
| 575-706, gnl|danRer3|chrUn (105303026-105303126) | |
| 575-706, gnl|dasNov1|scaffold_6683 (27609-27500) | |
| 575-706, gnl|echTel1|scaffold_294044 (37505-37397) | |
| 575-706, gnl|fr1|chrUn (279557724-279557811) | |
| 575-706, gnl|galGal2|chr11 (1348240-1348349) | |
| 575-706, gnl|hg17|chr16 (57123338-57123447) | |
| 575-706, gnl|Hg17|chr16 (57123487-57123356) | |
| 575-706, gnl|loxAfr1|scaffold_21799 (20568-20459) | |
| 575-706, gnl|mm7|chr8 (94317544-94317653) | |
| 575-706, gnl|Mm7|chr8 (94317693-94317562) | |
| 575-706, gnl|monDom2|scaffold_63 (8281270-8281379) | |
| 575-706, gnl|oryCun1|scaffold_204159 (59043-59152) | |
| 575-706, gnl|panTro1|chr18 (51242677-51242786) | |
| 575-706, gnl|rheMac2|chr20 (56887497-56887606) | |
| 575-706, gnl|rn3|chr19 (9799900-9799791) | |
| 575-706, gnl|tetNig1|chrUn_random (139872856-139872771) | |
| 575-706, gnl|xenTro1|scaffold_671 (667163-667070) | |
| 800-977, gnl|bosTau2|chr18 (23209050-23208873) | |
| 800-977, gnl|canFam2|chr2 (61011288-61011098) | |
| 800-977, gnl|danRer3|chrUn (105302418-105302595) | |
| 800-977, gnl|dasNov1|scaffold_6683 (34812-34621) | |
| 800-977, gnl|echTel1|scaffold_294044 (41968-41777) | |
| 800-977, gnl|fr1|chrUn (279557272-279557449) | |
| 800-977, gnl|galGal2|chr11 (1347215-1347406) | |
| 800-977, gnl|hg17|chr16 (57119865-57120056) | |
| 800-977, gnl|Hg17|chr16 (57120055-57119878) | |
| 800-977, gnl|loxAfr1|scaffold_478 (199495-199304) | |
| 800-977, gnl|mm7|chr8 (94314954-94315145) | |
| 800-977, gnl|Mm7|chr8 (94315144-94314967) | |
| 800-977, gnl|monDom2|scaffold_63 (8278664-8278843) | |
| 800-977, gnl|oryCun1|scaffold_204159 (55027-55206) | |
| 800-977, gnl|panTro1|chr18 (51239207-51239398) | |
| 800-977, gnl|rheMac2|chr20 (56884084-56884275) | |
| 800-977, gnl|rn3|chr19 (9802368-9802161) | |
| 800-977, gnl|tetNig1|chrUn_random (139873279-139873099) | |
| 800-977, gnl|xenTro1|scaffold_671 (669149-668971) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| nje (0.33184) | |
| cut (0.169924) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| cut (0.169924) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cbl (0.114797) |